Wall clock time and date at job start Wed Apr 1 2020 01:21:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.30642 * 128.63876 * 2 1 4 4 O 1.20841 * 109.61777 * 180.02562 * 3 2 1 5 5 N 1.20908 * 115.90422 * 359.69361 * 4 3 2 6 6 C 1.31596 * 109.18193 * 0.49754 * 5 4 3 7 7 C 1.48277 * 128.71414 * 179.81933 * 6 5 4 8 8 O 1.21503 * 120.00109 * 179.67875 * 7 6 5 9 9 N 1.34777 * 119.99570 * 359.67584 * 7 6 5 10 10 C 1.46499 * 119.99665 * 179.72350 * 9 7 6 11 11 C 1.53004 * 109.47198 * 180.27868 * 10 9 7 12 12 C 1.52997 * 109.47000 * 179.97438 * 11 10 9 13 13 H 1.08993 * 109.47845 * 304.99688 * 12 11 10 14 14 C 1.53004 * 109.47072 * 184.99738 * 12 11 10 15 15 N 1.46496 * 109.47261 * 65.00505 * 12 11 10 16 16 C 1.34777 * 120.00102 * 204.99703 * 15 12 11 17 17 O 1.21280 * 119.99969 * 359.97438 * 16 15 12 18 18 C 1.50706 * 120.00180 * 179.97438 * 16 15 12 19 19 S 1.80994 * 109.47183 * 179.97438 * 18 16 15 20 20 C 1.76202 * 99.99994 * 180.02562 * 19 18 16 21 21 H 1.08003 * 120.00117 * 0.02562 * 20 19 18 22 22 C 1.38792 * 119.99990 * 180.02562 * 20 19 18 23 23 N 1.31632 * 120.00037 * 180.02562 * 22 20 19 24 24 Si 1.86800 * 120.00331 * 0.02562 * 22 20 19 25 25 H 1.48509 * 109.46987 * 89.99935 * 24 22 20 26 26 H 1.48492 * 109.47768 * 209.99894 * 24 22 20 27 27 H 1.48495 * 109.47086 * 330.00658 * 24 22 20 28 28 H 1.08998 * 109.47189 * 269.97229 * 1 2 3 29 29 H 1.08991 * 109.46907 * 29.97304 * 1 2 3 30 30 H 1.09000 * 109.47032 * 149.97411 * 1 2 3 31 31 H 0.97001 * 120.00485 * 0.02562 * 9 7 6 32 32 H 1.09009 * 109.47454 * 300.27637 * 10 9 7 33 33 H 1.08998 * 109.47492 * 60.27932 * 10 9 7 34 34 H 1.08995 * 109.46638 * 300.00121 * 11 10 9 35 35 H 1.09006 * 109.47139 * 60.00254 * 11 10 9 36 36 H 1.08999 * 109.47409 * 300.00648 * 14 12 11 37 37 H 1.09005 * 109.47019 * 60.00242 * 14 12 11 38 38 H 1.08996 * 109.47178 * 179.97438 * 14 12 11 39 39 H 0.97008 * 120.00047 * 24.98902 * 15 12 11 40 40 H 1.08999 * 109.47165 * 300.00539 * 18 16 15 41 41 H 1.08997 * 109.46796 * 59.99800 * 18 16 15 42 42 H 0.97005 * 120.00349 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.3228 1.0204 0.0000 4 8 3.4652 0.6266 -0.0005 5 7 3.6101 -0.5737 0.0049 6 6 2.4281 -1.1520 -0.0006 7 6 2.1034 -2.5988 -0.0010 8 8 0.9437 -2.9612 -0.0007 9 7 3.0948 -3.5118 -0.0017 10 6 2.7741 -4.9413 0.0041 11 6 4.0700 -5.7547 0.0090 12 6 3.7350 -7.2475 0.0157 13 1 3.0796 -7.4692 0.8579 14 6 5.0254 -8.0592 0.1462 15 7 3.0597 -7.6021 -1.2351 16 6 2.2394 -8.6706 -1.2787 17 8 2.0607 -9.3389 -0.2825 18 6 1.5443 -9.0350 -2.5652 19 16 0.5218 -10.5053 -2.3030 20 6 -0.1528 -10.7010 -3.9190 21 1 0.1141 -10.0080 -4.7032 22 6 -1.0273 -11.7456 -4.1841 23 7 -1.5309 -11.8921 -5.3915 24 14 -1.4896 -12.9439 -2.8277 25 1 -2.6940 -12.4452 -2.1160 26 1 -1.7802 -14.2742 -3.4200 27 1 -0.3625 -13.0645 -1.8685 28 1 -0.3633 -0.0005 1.0276 29 1 -0.3633 0.8902 -0.5134 30 1 -0.3633 -0.8898 -0.5142 31 1 4.0207 -3.2225 -0.0016 32 1 2.1922 -5.1796 0.8945 33 1 2.1942 -5.1872 -0.8855 34 1 4.6518 -5.5164 -0.8814 35 1 4.6499 -5.5089 0.8986 36 1 5.6808 -7.8376 -0.6960 37 1 5.5279 -7.7955 1.0768 38 1 4.7867 -9.1227 0.1514 39 1 3.2028 -7.0677 -2.0320 40 1 0.9135 -8.2056 -2.8850 41 1 2.2885 -9.2428 -3.3340 42 1 -2.1423 -12.6220 -5.5767 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001077192610.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:21:07 Heat of formation + Delta-G solvation = 29.367828 kcal Electronic energy + Delta-G solvation = -26091.947147 eV Core-core repulsion = 22010.493233 eV Total energy + Delta-G solvation = -4081.453914 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.119 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -47.40342 -40.31848 -39.54787 -36.89037 -35.74551 -35.30568 -34.81091 -32.44618 -32.02804 -30.24890 -29.50414 -28.64025 -26.41441 -25.61965 -23.79162 -23.04549 -21.81335 -21.21951 -20.48889 -19.57335 -19.02630 -17.90498 -17.58781 -16.79813 -16.62385 -16.12755 -15.80590 -15.20321 -14.97740 -14.88830 -14.55946 -14.46594 -14.03016 -13.87366 -13.82523 -13.70607 -13.43233 -13.06426 -12.80167 -12.48486 -12.42054 -12.35122 -12.10678 -12.01217 -11.71902 -11.67720 -11.27427 -11.25046 -11.01212 -10.88911 -10.83323 -10.60755 -9.86467 -9.72898 -9.54889 -9.08465 -8.99794 -8.51189 -6.92517 -6.29383 -4.01228 0.20482 0.79265 2.07155 2.40230 2.73958 2.83430 2.89967 2.93366 3.27672 3.33117 3.33456 3.49804 3.63062 4.12669 4.22573 4.28244 4.32594 4.50916 4.57281 4.59986 4.73695 4.95769 5.07850 5.09673 5.09831 5.14002 5.19023 5.28505 5.40901 5.47493 5.52713 5.54570 5.73755 5.74683 5.86228 5.99779 6.06348 6.50389 6.72250 7.40099 7.54861 7.90164 7.93611 8.41119 8.44993 9.16744 10.79823 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.014661 B = 0.001996 C = 0.001822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1909.394631 B =14024.081763 C =15366.922313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.064 3.936 3 N -0.356 5.356 4 O 0.343 5.657 5 N -0.322 5.322 6 C -0.044 4.044 7 C 0.604 3.396 8 O -0.503 6.503 9 N -0.710 5.710 10 C 0.116 3.884 11 C -0.139 4.139 12 C 0.148 3.852 13 H 0.093 0.907 14 C -0.163 4.163 15 N -0.735 5.735 16 C 0.533 3.467 17 O -0.517 6.517 18 C -0.125 4.125 19 S -0.141 6.141 20 C -0.521 4.521 21 H 0.088 0.912 22 C 0.095 3.905 23 N -0.880 5.880 24 Si 0.857 3.143 25 H -0.267 1.267 26 H -0.274 1.274 27 H -0.235 1.235 28 H 0.095 0.905 29 H 0.089 0.911 30 H 0.104 0.896 31 H 0.408 0.592 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.087 0.913 36 H 0.057 0.943 37 H 0.063 0.937 38 H 0.067 0.933 39 H 0.399 0.601 40 H 0.097 0.903 41 H 0.097 0.903 42 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.454 24.198 11.910 30.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.101 4.101 3 N -0.082 5.082 4 O 0.118 5.882 5 N -0.042 5.042 6 C -0.209 4.209 7 C 0.386 3.614 8 O -0.375 6.375 9 N -0.363 5.363 10 C -0.007 4.007 11 C -0.177 4.177 12 C 0.042 3.958 13 H 0.111 0.889 14 C -0.222 4.222 15 N -0.390 5.390 16 C 0.319 3.681 17 O -0.392 6.392 18 C -0.276 4.276 19 S 0.085 5.915 20 C -0.669 4.669 21 H 0.106 0.894 22 C -0.114 4.114 23 N -0.517 5.517 24 Si 0.682 3.318 25 H -0.192 1.192 26 H -0.200 1.200 27 H -0.159 1.159 28 H 0.114 0.886 29 H 0.108 0.892 30 H 0.122 0.878 31 H 0.243 0.757 32 H 0.097 0.903 33 H 0.099 0.901 34 H 0.097 0.903 35 H 0.106 0.894 36 H 0.076 0.924 37 H 0.082 0.918 38 H 0.086 0.914 39 H 0.233 0.767 40 H 0.115 0.885 41 H 0.115 0.885 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 13.129 23.361 13.461 29.989 hybrid contribution -0.192 0.111 -1.290 1.309 sum 12.937 23.472 12.171 29.435 Atomic orbital electron populations 1.20395 0.82686 1.05558 1.04950 1.26302 1.00511 0.84986 0.98338 1.75102 0.91058 1.23890 1.18127 1.85073 1.23404 1.16484 1.63253 1.75335 1.23027 0.93037 1.12841 1.26066 0.88262 0.98415 1.08183 1.16430 0.85698 0.81497 0.77748 1.90887 1.18750 1.79384 1.48497 1.45830 1.09448 1.06833 1.74149 1.21592 0.97863 0.77178 1.04053 1.22130 0.96997 0.94485 1.04121 1.20778 0.94648 0.91838 0.88528 0.88920 1.22174 0.96603 1.01606 1.01775 1.46107 1.48450 1.31408 1.13012 1.20278 0.78024 0.79565 0.90235 1.90700 1.61993 1.50357 1.36114 1.23288 1.02553 1.04242 0.97503 1.84782 1.56799 1.31189 1.18733 1.22313 1.32251 1.18014 0.94309 0.89398 1.24719 0.94308 0.96709 0.95623 1.69940 1.30353 1.31531 1.19856 0.86729 0.81389 0.80857 0.82836 1.19191 1.19958 1.15941 0.88636 0.89227 0.87766 0.75727 0.90300 0.90099 0.90293 0.89445 0.92395 0.91769 0.91389 0.76731 0.88503 0.88494 0.91940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.45 10.22 36.01 0.37 -0.08 16 2 C 0.06 0.52 7.79 -79.33 -0.62 -0.10 16 3 N -0.36 -2.97 12.22 33.76 0.41 -2.56 16 4 O 0.34 2.72 11.65 27.26 0.32 3.04 16 5 N -0.32 -2.55 12.13 33.49 0.41 -2.14 16 6 C -0.04 -0.37 7.56 -80.07 -0.61 -0.98 16 7 C 0.60 5.67 7.85 -12.13 -0.10 5.57 16 8 O -0.50 -6.19 15.96 5.36 0.09 -6.11 16 9 N -0.71 -4.98 5.55 -61.11 -0.34 -5.31 16 10 C 0.12 0.87 5.56 -4.04 -0.02 0.85 16 11 C -0.14 -0.77 4.87 -26.73 -0.13 -0.90 16 12 C 0.15 1.33 2.57 -67.93 -0.17 1.16 16 13 H 0.09 1.02 7.58 -51.93 -0.39 0.63 16 14 C -0.16 -1.42 9.48 37.16 0.35 -1.07 16 15 N -0.73 -8.13 4.53 -53.81 -0.24 -8.37 16 16 C 0.53 8.85 7.81 -10.98 -0.09 8.76 16 17 O -0.52 -10.57 15.52 5.56 0.09 -10.48 16 18 C -0.13 -2.34 6.16 36.01 0.22 -2.12 16 19 S -0.14 -3.54 18.55 -107.50 -1.99 -5.53 16 20 C -0.52 -14.94 10.04 30.94 0.31 -14.63 16 21 H 0.09 2.63 8.03 -52.48 -0.42 2.20 16 22 C 0.10 2.78 5.50 -17.43 -0.10 2.68 16 23 N -0.88 -26.53 13.97 55.49 0.78 -25.75 16 24 Si 0.86 21.74 27.74 -169.99 -4.72 17.03 16 25 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 26 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 27 H -0.24 -5.95 6.74 56.52 0.38 -5.57 16 28 H 0.10 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.10 0.68 7.31 -51.93 -0.38 0.30 16 31 H 0.41 2.01 8.33 -40.82 -0.34 1.67 16 32 H 0.08 0.69 8.14 -51.92 -0.42 0.27 16 33 H 0.08 0.72 7.75 -51.93 -0.40 0.32 16 34 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.40 3.37 8.60 -40.82 -0.35 3.02 16 40 H 0.10 1.70 8.14 -51.92 -0.42 1.28 16 41 H 0.10 1.69 8.14 -51.92 -0.42 1.26 16 42 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 381.52 15.07 5.75 5.75 Total: -1.00 -35.34 381.52 -5.71 -41.04 By element: Atomic # 1 Polarization: 5.94 SS G_CDS: -5.67 Total: 0.27 kcal Atomic # 6 Polarization: -0.29 SS G_CDS: -0.58 Total: -0.87 kcal Atomic # 7 Polarization: -45.15 SS G_CDS: 1.01 Total: -44.14 kcal Atomic # 8 Polarization: -14.04 SS G_CDS: 0.49 Total: -13.55 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.72 Total: 17.03 kcal Atomic # 16 Polarization: -3.54 SS G_CDS: -1.99 Total: -5.53 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -35.34 -5.71 -41.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077192610.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.412 kcal (2) G-P(sol) polarization free energy of solvation -35.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.044 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds