Wall clock time and date at job start Wed Apr 1 2020 01:21:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.30642 * 128.63876 * 2 1 4 4 O 1.20841 * 109.61777 * 180.02562 * 3 2 1 5 5 N 1.20908 * 115.90422 * 359.69361 * 4 3 2 6 6 C 1.31596 * 109.18193 * 0.49754 * 5 4 3 7 7 C 1.48277 * 128.71414 * 179.81933 * 6 5 4 8 8 O 1.21503 * 120.00109 * 179.67875 * 7 6 5 9 9 N 1.34777 * 119.99570 * 359.67584 * 7 6 5 10 10 C 1.46499 * 119.99665 * 179.72350 * 9 7 6 11 11 C 1.53004 * 109.47198 * 180.27868 * 10 9 7 12 12 C 1.52997 * 109.47000 * 179.97438 * 11 10 9 13 13 H 1.08993 * 109.47845 * 304.99688 * 12 11 10 14 14 C 1.53004 * 109.47072 * 184.99738 * 12 11 10 15 15 N 1.46496 * 109.47261 * 65.00505 * 12 11 10 16 16 C 1.34777 * 120.00102 * 204.99703 * 15 12 11 17 17 O 1.21280 * 119.99969 * 359.97438 * 16 15 12 18 18 C 1.50706 * 120.00180 * 179.97438 * 16 15 12 19 19 S 1.80994 * 109.47183 * 179.97438 * 18 16 15 20 20 C 1.76202 * 99.99994 * 180.02562 * 19 18 16 21 21 H 1.08003 * 120.00117 * 0.02562 * 20 19 18 22 22 C 1.38792 * 119.99990 * 180.02562 * 20 19 18 23 23 N 1.31632 * 120.00037 * 180.02562 * 22 20 19 24 24 Si 1.86800 * 120.00331 * 0.02562 * 22 20 19 25 25 H 1.48509 * 109.46987 * 89.99935 * 24 22 20 26 26 H 1.48492 * 109.47768 * 209.99894 * 24 22 20 27 27 H 1.48495 * 109.47086 * 330.00658 * 24 22 20 28 28 H 1.08998 * 109.47189 * 269.97229 * 1 2 3 29 29 H 1.08991 * 109.46907 * 29.97304 * 1 2 3 30 30 H 1.09000 * 109.47032 * 149.97411 * 1 2 3 31 31 H 0.97001 * 120.00485 * 0.02562 * 9 7 6 32 32 H 1.09009 * 109.47454 * 300.27637 * 10 9 7 33 33 H 1.08998 * 109.47492 * 60.27932 * 10 9 7 34 34 H 1.08995 * 109.46638 * 300.00121 * 11 10 9 35 35 H 1.09006 * 109.47139 * 60.00254 * 11 10 9 36 36 H 1.08999 * 109.47409 * 300.00648 * 14 12 11 37 37 H 1.09005 * 109.47019 * 60.00242 * 14 12 11 38 38 H 1.08996 * 109.47178 * 179.97438 * 14 12 11 39 39 H 0.97008 * 120.00047 * 24.98902 * 15 12 11 40 40 H 1.08999 * 109.47165 * 300.00539 * 18 16 15 41 41 H 1.08997 * 109.46796 * 59.99800 * 18 16 15 42 42 H 0.97005 * 120.00349 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.3228 1.0204 0.0000 4 8 3.4652 0.6266 -0.0005 5 7 3.6101 -0.5737 0.0049 6 6 2.4281 -1.1520 -0.0006 7 6 2.1034 -2.5988 -0.0010 8 8 0.9437 -2.9612 -0.0007 9 7 3.0948 -3.5118 -0.0017 10 6 2.7741 -4.9413 0.0041 11 6 4.0700 -5.7547 0.0090 12 6 3.7350 -7.2475 0.0157 13 1 3.0796 -7.4692 0.8579 14 6 5.0254 -8.0592 0.1462 15 7 3.0597 -7.6021 -1.2351 16 6 2.2394 -8.6706 -1.2787 17 8 2.0607 -9.3389 -0.2825 18 6 1.5443 -9.0350 -2.5652 19 16 0.5218 -10.5053 -2.3030 20 6 -0.1528 -10.7010 -3.9190 21 1 0.1141 -10.0080 -4.7032 22 6 -1.0273 -11.7456 -4.1841 23 7 -1.5309 -11.8921 -5.3915 24 14 -1.4896 -12.9439 -2.8277 25 1 -2.6940 -12.4452 -2.1160 26 1 -1.7802 -14.2742 -3.4200 27 1 -0.3625 -13.0645 -1.8685 28 1 -0.3633 -0.0005 1.0276 29 1 -0.3633 0.8902 -0.5134 30 1 -0.3633 -0.8898 -0.5142 31 1 4.0207 -3.2225 -0.0016 32 1 2.1922 -5.1796 0.8945 33 1 2.1942 -5.1872 -0.8855 34 1 4.6518 -5.5164 -0.8814 35 1 4.6499 -5.5089 0.8986 36 1 5.6808 -7.8376 -0.6960 37 1 5.5279 -7.7955 1.0768 38 1 4.7867 -9.1227 0.1514 39 1 3.2028 -7.0677 -2.0320 40 1 0.9135 -8.2056 -2.8850 41 1 2.2885 -9.2428 -3.3340 42 1 -2.1423 -12.6220 -5.5767 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001077192610.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:21:06 Heat of formation + Delta-G solvation = 2.342520 kcal Electronic energy + Delta-G solvation = -26093.119052 eV Core-core repulsion = 22010.493233 eV Total energy + Delta-G solvation = -4082.625819 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.119 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -48.02790 -41.10627 -40.68986 -37.78110 -36.37309 -36.01529 -35.57834 -34.67427 -33.09341 -30.94697 -30.28861 -29.72378 -27.85088 -27.05576 -24.47541 -23.65854 -22.62209 -22.00702 -21.55551 -20.19939 -19.94234 -19.61965 -18.28412 -17.97970 -17.49715 -17.15400 -16.99481 -16.65687 -16.42223 -15.86516 -15.64672 -15.16493 -15.04448 -14.87800 -14.75088 -14.51301 -14.44388 -14.42465 -14.01740 -13.37620 -13.34653 -13.10331 -13.06932 -13.00558 -12.98405 -12.63686 -12.51390 -12.46067 -12.32031 -11.96927 -11.86491 -11.61950 -11.44415 -11.17428 -10.95016 -10.53421 -10.40505 -10.11712 -8.99181 -8.51792 -6.22292 -0.45296 0.17857 0.99759 1.31273 1.41421 1.46723 1.56530 1.59790 1.69304 2.21498 2.23338 2.28013 2.30632 2.72231 2.72524 2.86411 3.51108 3.62358 3.65820 3.84741 3.95568 4.03513 4.04485 4.23391 4.41944 4.46291 4.48165 4.55016 4.59137 4.66512 4.81990 4.85987 4.93956 5.04489 5.09395 5.17065 5.34756 5.54537 5.70419 6.11138 6.11483 6.49375 6.76331 6.93427 7.23319 7.27511 8.60591 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.014661 B = 0.001996 C = 0.001822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1909.394631 B =14024.081763 C =15366.922313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.062 3.938 3 N -0.363 5.363 4 O 0.347 5.653 5 N -0.315 5.315 6 C -0.053 4.053 7 C 0.604 3.396 8 O -0.538 6.538 9 N -0.694 5.694 10 C 0.116 3.884 11 C -0.122 4.122 12 C 0.144 3.856 13 H 0.072 0.928 14 C -0.159 4.159 15 N -0.710 5.710 16 C 0.537 3.463 17 O -0.561 6.561 18 C -0.114 4.114 19 S -0.176 6.176 20 C -0.528 4.528 21 H 0.062 0.938 22 C 0.044 3.956 23 N -0.917 5.917 24 Si 0.915 3.085 25 H -0.263 1.263 26 H -0.259 1.259 27 H -0.236 1.236 28 H 0.107 0.893 29 H 0.105 0.895 30 H 0.095 0.905 31 H 0.420 0.580 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.104 0.896 35 H 0.114 0.886 36 H 0.074 0.926 37 H 0.087 0.913 38 H 0.033 0.967 39 H 0.415 0.585 40 H 0.110 0.890 41 H 0.113 0.887 42 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.289 25.587 12.916 32.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.104 4.104 3 N -0.090 5.090 4 O 0.121 5.879 5 N -0.035 5.035 6 C -0.218 4.218 7 C 0.386 3.614 8 O -0.413 6.413 9 N -0.346 5.346 10 C -0.007 4.007 11 C -0.160 4.160 12 C 0.040 3.960 13 H 0.090 0.910 14 C -0.217 4.217 15 N -0.364 5.364 16 C 0.323 3.677 17 O -0.439 6.439 18 C -0.264 4.264 19 S 0.051 5.949 20 C -0.676 4.676 21 H 0.080 0.920 22 C -0.161 4.161 23 N -0.555 5.555 24 Si 0.737 3.263 25 H -0.188 1.188 26 H -0.183 1.183 27 H -0.160 1.160 28 H 0.125 0.875 29 H 0.124 0.876 30 H 0.113 0.887 31 H 0.258 0.742 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.122 0.878 35 H 0.132 0.868 36 H 0.093 0.907 37 H 0.106 0.894 38 H 0.052 0.948 39 H 0.252 0.748 40 H 0.128 0.872 41 H 0.131 0.869 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 15.036 24.791 14.446 32.394 hybrid contribution -0.647 -0.150 -1.621 1.752 sum 14.389 24.641 12.824 31.284 Atomic orbital electron populations 1.20490 0.81437 1.05857 1.05770 1.26658 1.01376 0.84687 0.97666 1.75107 0.91150 1.24028 1.18677 1.85064 1.23371 1.16417 1.63089 1.75314 1.22713 0.93036 1.12415 1.25985 0.88680 0.98184 1.08973 1.16553 0.85530 0.81998 0.77320 1.90873 1.20167 1.79952 1.50352 1.45702 1.09740 1.06344 1.72852 1.21544 0.98772 0.77600 1.02773 1.22034 0.96240 0.91033 1.06690 1.20966 0.94253 0.94368 0.86440 0.91026 1.22129 0.96481 0.99224 1.03848 1.45914 1.46418 1.29341 1.14742 1.19877 0.78632 0.80627 0.88610 1.90691 1.63840 1.52263 1.37071 1.23295 1.02221 1.01374 0.99556 1.84694 1.58311 1.35469 1.16464 1.22466 1.32290 1.17392 0.95461 0.92021 1.25583 0.94368 0.98445 0.97743 1.70019 1.31278 1.32619 1.21607 0.85855 0.80992 0.79307 0.80142 1.18776 1.18339 1.16002 0.87497 0.87637 0.88665 0.74195 0.91730 0.91483 0.87784 0.86792 0.90699 0.89413 0.94803 0.74784 0.87190 0.86879 0.91385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.83 10.22 71.24 0.73 -0.10 16 2 C 0.06 0.92 7.79 45.18 0.35 1.28 16 3 N -0.36 -5.61 12.22 -51.81 -0.63 -6.25 16 4 O 0.35 5.01 11.65 140.84 1.64 6.65 16 5 N -0.32 -4.47 12.13 -52.05 -0.63 -5.10 16 6 C -0.05 -0.84 7.56 44.29 0.34 -0.50 16 7 C 0.60 10.68 7.85 86.91 0.68 11.36 16 8 O -0.54 -13.14 15.96 -3.73 -0.06 -13.20 16 9 N -0.69 -8.24 5.55 -465.54 -2.59 -10.83 16 10 C 0.12 1.51 5.56 86.38 0.48 1.99 16 11 C -0.12 -0.91 4.87 30.59 0.15 -0.76 16 12 C 0.14 2.27 2.57 44.99 0.12 2.39 16 13 H 0.07 1.50 7.58 -2.39 -0.02 1.48 16 14 C -0.16 -2.34 9.48 71.98 0.68 -1.66 16 15 N -0.71 -14.28 4.53 -442.54 -2.00 -16.28 16 16 C 0.54 17.36 7.81 87.66 0.68 18.04 16 17 O -0.56 -22.90 15.52 -3.03 -0.05 -22.95 16 18 C -0.11 -4.17 6.16 71.24 0.44 -3.73 16 19 S -0.18 -8.84 18.55 -56.49 -1.05 -9.89 16 20 C -0.53 -30.80 10.04 67.95 0.68 -30.12 16 21 H 0.06 3.79 8.03 -2.91 -0.02 3.76 16 22 C 0.04 2.59 5.50 84.86 0.47 3.05 16 23 N -0.92 -56.03 13.97 21.65 0.30 -55.73 16 24 Si 0.92 45.16 27.74 68.60 1.90 47.07 16 25 H -0.26 -12.70 7.11 99.48 0.71 -11.99 16 26 H -0.26 -11.98 7.11 99.48 0.71 -11.27 16 27 H -0.24 -11.60 6.74 99.48 0.67 -10.93 16 28 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.09 1.22 7.31 -2.39 -0.02 1.20 16 31 H 0.42 2.85 8.33 -92.71 -0.77 2.08 16 32 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 33 H 0.07 1.09 7.75 -2.39 -0.02 1.07 16 34 H 0.10 0.37 8.14 -2.39 -0.02 0.35 16 35 H 0.11 0.39 8.14 -2.38 -0.02 0.37 16 36 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 37 H 0.09 0.90 8.14 -2.38 -0.02 0.88 16 38 H 0.03 0.75 8.14 -2.39 -0.02 0.73 16 39 H 0.42 5.79 8.60 -92.70 -0.80 4.99 16 40 H 0.11 3.76 8.14 -2.40 -0.02 3.74 16 41 H 0.11 3.79 8.14 -2.40 -0.02 3.77 16 42 H 0.28 15.63 8.31 -92.70 -0.77 14.86 16 Total: -1.00 -78.80 381.52 2.11 -76.69 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: -0.53 Total: 8.58 kcal Atomic # 6 Polarization: -4.56 SS G_CDS: 5.80 Total: 1.24 kcal Atomic # 7 Polarization: -88.64 SS G_CDS: -5.55 Total: -94.19 kcal Atomic # 8 Polarization: -31.03 SS G_CDS: 1.53 Total: -29.50 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 1.90 Total: 47.07 kcal Atomic # 16 Polarization: -8.84 SS G_CDS: -1.05 Total: -9.89 kcal Total: -78.80 2.11 -76.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077192610.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.035 kcal (2) G-P(sol) polarization free energy of solvation -78.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.693 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds