Wall clock time and date at job start Wed Apr 1 2020 00:25:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86796 * 120.00218 * 2 1 4 4 H 1.48501 * 109.46922 * 90.00236 * 3 2 1 5 5 H 1.48496 * 109.47354 * 210.00432 * 3 2 1 6 6 H 1.48501 * 109.47428 * 330.00540 * 3 2 1 7 7 C 1.38812 * 119.99535 * 180.28285 * 2 1 3 8 8 H 1.08002 * 119.99473 * 179.97438 * 7 2 1 9 9 N 1.36931 * 120.00429 * 359.97438 * 7 2 1 10 10 C 1.46499 * 120.00122 * 180.02562 * 9 7 2 11 11 H 1.08991 * 110.30455 * 35.72287 * 10 9 7 12 12 C 1.54387 * 110.34292 * 273.54477 * 10 9 7 13 13 N 1.48148 * 104.61815 * 264.99717 * 12 10 9 14 14 C 1.34779 * 127.83782 * 140.39587 * 13 12 10 15 15 O 1.21284 * 119.99928 * 180.02562 * 14 13 12 16 16 C 1.50697 * 119.99867 * 0.02562 * 14 13 12 17 17 C 1.53784 * 113.61587 * 279.13587 * 16 14 13 18 18 C 1.53955 * 87.02152 * 220.04893 * 17 16 14 19 19 F 1.39893 * 113.53939 * 270.80925 * 18 17 16 20 20 F 1.39902 * 113.73817 * 139.94203 * 18 17 16 21 21 C 1.53781 * 87.11069 * 25.36408 * 18 17 16 22 22 C 1.48142 * 104.32496 * 320.41098 * 13 12 10 23 23 C 1.54287 * 110.34031 * 158.00987 * 10 9 7 24 24 H 1.09002 * 110.34646 * 0.02562 * 23 10 9 25 25 C 1.53001 * 110.33971 * 237.73941 * 23 10 9 26 26 F 1.39897 * 109.47041 * 60.00654 * 25 23 10 27 27 F 1.39907 * 109.46916 * 179.97438 * 25 23 10 28 28 F 1.39899 * 109.47665 * 299.99824 * 25 23 10 29 29 H 0.97005 * 119.99717 * 359.71788 * 1 2 3 30 30 H 0.97001 * 120.00088 * 0.02562 * 9 7 2 31 31 H 1.08999 * 110.40946 * 23.78105 * 12 10 9 32 32 H 1.09000 * 110.40824 * 146.09599 * 12 10 9 33 33 H 1.09002 * 112.85312 * 50.33568 * 16 14 13 34 34 H 1.09003 * 113.61257 * 334.57307 * 17 16 14 35 35 H 1.09001 * 113.61503 * 105.47062 * 17 16 14 36 36 H 1.09003 * 113.61139 * 220.09201 * 21 18 17 37 37 H 1.08995 * 113.69563 * 89.19802 * 21 18 17 38 38 H 1.08999 * 110.41048 * 158.36830 * 22 13 12 39 39 H 1.08994 * 110.41171 * 280.68783 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 1.4001 5 1 3.5478 1.4401 -0.7001 6 1 1.4478 2.6527 -0.6999 7 6 2.0102 -1.2022 -0.0059 8 1 3.0902 -1.2022 -0.0064 9 7 1.3255 -2.3880 -0.0113 10 6 2.0580 -3.6568 -0.0170 11 1 2.9658 -3.5721 0.5803 12 6 2.4039 -4.0703 -1.4636 13 7 1.3095 -4.9858 -1.8626 14 6 0.6912 -5.0638 -3.0576 15 8 -0.1955 -5.8732 -3.2299 16 6 1.1016 -4.1454 -4.1797 17 6 0.4857 -2.7397 -4.0817 18 6 0.2969 -2.8035 -5.6083 19 9 1.3962 -2.3233 -6.3279 20 9 -0.9174 -2.2660 -6.0486 21 6 0.2764 -4.3344 -5.4635 22 6 1.0487 -5.7957 -0.6499 23 6 1.1644 -4.7943 0.5196 24 1 0.1804 -4.4092 0.7870 25 6 1.8225 -5.4623 1.7286 26 9 2.0108 -4.5143 2.7401 27 9 0.9977 -6.4892 2.2003 28 9 3.0604 -5.9939 1.3513 29 1 -0.4850 0.8401 0.0041 30 1 0.3555 -2.3880 -0.0113 31 1 2.4242 -3.1961 -2.1143 32 1 3.3633 -4.5869 -1.4922 33 1 2.1783 -4.1395 -4.3496 34 1 -0.4519 -2.7115 -3.5265 35 1 1.1925 -1.9748 -3.7599 36 1 0.8144 -4.8551 -6.2557 37 1 -0.7180 -4.7444 -5.2870 38 1 0.0467 -6.2231 -0.6864 39 1 1.7943 -6.5847 -0.5521 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099236570.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:25:10 Heat of formation + Delta-G solvation = -245.205658 kcal Electronic energy + Delta-G solvation = -31703.906146 eV Core-core repulsion = 26482.555954 eV Total energy + Delta-G solvation = -5221.350192 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.111 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.97120 -48.77171 -47.48416 -47.38409 -47.09962 -40.27182 -38.21770 -36.58332 -34.16609 -32.15939 -30.71162 -27.72345 -27.09404 -26.24182 -24.86384 -24.23277 -22.40334 -20.74926 -20.44642 -19.21851 -18.38802 -18.22821 -18.06260 -17.45458 -16.79625 -16.76319 -16.53065 -16.12647 -15.50833 -15.17823 -14.91238 -14.47003 -14.35731 -14.22562 -13.96283 -13.87377 -13.78920 -13.68968 -13.55693 -13.43436 -13.39967 -13.38346 -13.12158 -12.62821 -12.43687 -11.99035 -11.84346 -11.78555 -11.54022 -11.42751 -11.33499 -11.00789 -10.94498 -10.92740 -10.43238 -10.25396 -9.93883 -9.80135 -9.27875 -8.67777 -7.25441 -5.98630 -3.31509 2.56234 2.71801 3.03901 3.31879 3.37724 3.39906 3.46131 3.77414 3.90664 3.99674 4.13613 4.19293 4.34179 4.35821 4.43038 4.71854 4.81013 4.98104 5.16785 5.20948 5.25833 5.35885 5.38607 5.46597 5.49496 5.57658 5.62804 5.83441 5.85209 5.94795 5.99183 6.11235 6.14871 6.42979 7.50023 7.57894 8.15343 8.16140 9.29603 9.77558 10.13094 11.22346 Molecular weight = 342.11amu Principal moments of inertia in cm(-1) A = 0.007983 B = 0.005456 C = 0.003534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3506.725299 B = 5130.771523 C = 7921.414102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.001 4.001 3 Si 0.907 3.093 4 H -0.288 1.288 5 H -0.280 1.280 6 H -0.290 1.290 7 C -0.255 4.255 8 H 0.074 0.926 9 N -0.709 5.709 10 C 0.179 3.821 11 H 0.077 0.923 12 C 0.070 3.930 13 N -0.608 5.608 14 C 0.555 3.445 15 O -0.545 6.545 16 C -0.126 4.126 17 C -0.140 4.140 18 C 0.253 3.747 19 F -0.180 7.180 20 F -0.188 7.188 21 C -0.140 4.140 22 C 0.117 3.883 23 C -0.165 4.165 24 H 0.129 0.871 25 C 0.464 3.536 26 F -0.173 7.173 27 F -0.187 7.187 28 F -0.184 7.184 29 H 0.259 0.741 30 H 0.387 0.613 31 H 0.097 0.903 32 H 0.068 0.932 33 H 0.124 0.876 34 H 0.119 0.881 35 H 0.110 0.890 36 H 0.096 0.904 37 H 0.124 0.876 38 H 0.093 0.907 39 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.801 -10.979 -4.818 12.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.198 4.198 3 Si 0.737 3.263 4 H -0.215 1.215 5 H -0.205 1.205 6 H -0.217 1.217 7 C -0.386 4.386 8 H 0.092 0.908 9 N -0.349 5.349 10 C 0.066 3.934 11 H 0.095 0.905 12 C -0.056 4.056 13 N -0.340 5.340 14 C 0.344 3.656 15 O -0.423 6.423 16 C -0.147 4.147 17 C -0.178 4.178 18 C 0.217 3.783 19 F -0.161 7.161 20 F -0.169 7.169 21 C -0.179 4.179 22 C -0.007 4.007 23 C -0.187 4.187 24 H 0.147 0.853 25 C 0.409 3.591 26 F -0.154 7.154 27 F -0.169 7.169 28 F -0.165 7.165 29 H 0.068 0.932 30 H 0.222 0.778 31 H 0.115 0.885 32 H 0.086 0.914 33 H 0.142 0.858 34 H 0.137 0.863 35 H 0.129 0.871 36 H 0.115 0.885 37 H 0.142 0.858 38 H 0.112 0.888 39 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 3.388 -11.213 -5.021 12.744 hybrid contribution 0.333 1.059 0.224 1.133 sum 3.721 -10.154 -4.797 11.830 Atomic orbital electron populations 1.69653 1.05150 1.26184 1.55997 1.24757 0.95478 0.97810 1.01803 0.86214 0.78755 0.83596 0.77711 1.21503 1.20532 1.21659 1.19167 0.91110 0.83496 1.44806 0.90756 1.42407 1.05720 0.98937 1.87855 1.21030 0.94155 0.85415 0.92828 0.90522 1.23673 0.88516 0.93430 0.99978 1.48753 1.37221 1.37655 1.10411 1.19629 0.80944 0.83309 0.81700 1.90692 1.31057 1.38685 1.81872 1.22451 1.02143 0.95939 0.94216 1.24024 1.05053 0.96564 0.92169 1.22077 0.71993 0.93166 0.91064 1.93010 1.53093 1.89837 1.80151 1.93015 1.44313 1.88218 1.91369 1.23984 1.04145 0.92562 0.97160 1.22130 1.03481 0.92562 0.82507 1.23866 1.03788 0.98846 0.92162 0.85301 1.20289 0.76729 0.76707 0.85337 1.93238 1.95217 1.64186 1.62742 1.93175 1.72270 1.61326 1.90083 1.93154 1.44967 1.87179 1.91223 0.93154 0.77791 0.88488 0.91365 0.85795 0.86251 0.87102 0.88547 0.85772 0.88828 0.90195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.24 13.06 55.49 0.72 -24.52 16 2 C 0.00 -0.02 5.50 -17.43 -0.10 -0.12 16 3 Si 0.91 20.60 29.55 -169.99 -5.02 15.58 16 4 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.28 -6.16 7.11 56.52 0.40 -5.75 16 6 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.26 -6.11 9.97 -15.06 -0.15 -6.26 16 8 H 0.07 1.72 7.83 -52.49 -0.41 1.31 16 9 N -0.71 -14.84 5.14 -52.07 -0.27 -15.11 16 10 C 0.18 2.89 2.99 -66.53 -0.20 2.69 16 11 H 0.08 1.27 7.37 -51.93 -0.38 0.89 16 12 C 0.07 0.97 6.63 -2.41 -0.02 0.96 16 13 N -0.61 -8.51 3.32 -169.31 -0.56 -9.07 16 14 C 0.56 8.17 7.44 -10.99 -0.08 8.09 16 15 O -0.55 -9.43 16.18 5.55 0.09 -9.34 16 16 C -0.13 -1.56 3.09 -90.96 -0.28 -1.84 16 17 C -0.14 -1.93 7.11 -25.83 -0.18 -2.11 16 18 C 0.25 3.36 3.28 -25.83 -0.08 3.27 16 19 F -0.18 -2.48 17.38 2.25 0.04 -2.44 16 20 F -0.19 -2.80 17.41 2.25 0.04 -2.77 16 21 C -0.14 -1.62 7.19 -25.92 -0.19 -1.81 16 22 C 0.12 1.52 6.38 -2.41 -0.02 1.50 16 23 C -0.17 -2.32 2.84 -89.21 -0.25 -2.58 16 24 H 0.13 1.92 7.64 -51.93 -0.40 1.52 16 25 C 0.46 6.36 2.53 37.16 0.09 6.46 16 26 F -0.17 -2.73 16.93 2.25 0.04 -2.69 16 27 F -0.19 -2.49 17.17 2.25 0.04 -2.45 16 28 F -0.18 -2.40 16.05 2.25 0.04 -2.37 16 29 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 30 H 0.39 8.89 7.50 -40.82 -0.31 8.58 16 31 H 0.10 1.45 7.03 -51.93 -0.37 1.08 16 32 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.12 1.30 8.14 -51.93 -0.42 0.87 16 34 H 0.12 1.80 8.09 -51.93 -0.42 1.38 16 35 H 0.11 1.61 8.11 -51.93 -0.42 1.19 16 36 H 0.10 0.93 8.14 -51.93 -0.42 0.50 16 37 H 0.12 1.53 7.45 -51.93 -0.39 1.14 16 38 H 0.09 1.23 7.88 -51.93 -0.41 0.82 16 39 H 0.08 0.93 7.22 -51.93 -0.37 0.55 16 LS Contribution 347.30 15.07 5.23 5.23 Total: -1.00 -27.84 347.30 -5.34 -33.18 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: -4.28 Total: 8.52 kcal Atomic # 6 Polarization: 9.70 SS G_CDS: -1.45 Total: 8.25 kcal Atomic # 7 Polarization: -48.60 SS G_CDS: -0.10 Total: -48.71 kcal Atomic # 8 Polarization: -9.43 SS G_CDS: 0.09 Total: -9.34 kcal Atomic # 9 Polarization: -12.91 SS G_CDS: 0.19 Total: -12.71 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -27.84 -5.34 -33.18 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099236570.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -212.025 kcal (2) G-P(sol) polarization free energy of solvation -27.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -239.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -245.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds