Wall clock time and date at job start Wed Apr 1 2020 00:35:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86803 * 119.99643 * 2 1 4 4 H 1.48494 * 109.47228 * 0.02562 * 3 2 1 5 5 H 1.48501 * 109.46793 * 120.00353 * 3 2 1 6 6 H 1.48500 * 109.47000 * 240.00445 * 3 2 1 7 7 C 1.38798 * 119.99969 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99506 * 179.97438 * 7 2 1 9 9 S 1.76194 * 120.00052 * 359.97438 * 7 2 1 10 10 C 1.81004 * 99.99738 * 179.97438 * 9 7 2 11 11 C 1.50705 * 109.47234 * 179.97438 * 10 9 7 12 12 O 1.21284 * 119.99701 * 0.02562 * 11 10 9 13 13 N 1.34770 * 120.00005 * 180.02562 * 11 10 9 14 14 C 1.46500 * 119.99677 * 180.02562 * 13 11 10 15 15 H 1.08999 * 109.52627 * 324.86679 * 14 13 11 16 16 C 1.53112 * 109.52926 * 84.99805 * 14 13 11 17 17 C 1.53038 * 109.28375 * 177.55842 * 16 14 13 18 18 N 1.46849 * 109.52093 * 300.82197 * 17 16 14 19 19 C 1.46897 * 110.99877 * 185.84124 * 18 17 16 20 20 C 1.50702 * 109.47422 * 66.04197 * 19 18 17 21 21 C 1.40893 * 125.30121 * 94.72314 * 20 19 18 22 22 N 1.29956 * 109.39236 * 179.80165 * 21 20 19 23 23 O 1.41886 * 107.41111 * 0.44249 * 22 21 20 24 24 N 1.29945 * 125.30522 * 275.02390 * 20 19 18 25 25 C 1.46843 * 111.20136 * 61.74016 * 18 17 16 26 26 C 1.53045 * 109.52087 * 298.25801 * 25 18 17 27 27 H 1.08996 * 109.50286 * 299.23169 * 26 25 18 28 28 O 1.42898 * 109.50076 * 179.11726 * 26 25 18 29 29 H 0.97005 * 119.99723 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47255 * 299.99975 * 10 9 7 31 31 H 1.09001 * 109.46783 * 60.00283 * 10 9 7 32 32 H 0.96995 * 120.00238 * 359.97438 * 13 11 10 33 33 H 1.09000 * 109.50173 * 297.49859 * 16 14 13 34 34 H 1.09002 * 109.50210 * 57.61309 * 16 14 13 35 35 H 1.08998 * 109.46270 * 60.83333 * 17 16 14 36 36 H 1.09004 * 109.46449 * 180.81412 * 17 16 14 37 37 H 1.09002 * 109.47268 * 186.04747 * 19 18 17 38 38 H 1.09002 * 109.46892 * 306.04402 * 19 18 17 39 39 H 1.07998 * 125.30651 * 0.02562 * 21 20 19 40 40 H 1.09000 * 109.45889 * 58.27253 * 25 18 17 41 41 H 1.08997 * 109.46474 * 178.24186 * 25 18 17 42 42 H 0.96705 * 114.00021 * 60.19517 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 1.2852 2.7465 0.0006 5 1 3.1040 1.6964 1.2125 6 1 3.1039 1.6966 -1.2126 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2019 -0.0010 9 16 1.1294 -2.7279 -0.0005 10 6 2.5160 -3.8913 -0.0021 11 6 1.9876 -5.3027 -0.0017 12 8 0.7913 -5.5023 -0.0009 13 7 2.8444 -6.3430 -0.0022 14 6 2.3307 -7.7150 -0.0024 15 1 1.4163 -7.7617 0.5891 16 6 2.0329 -8.1499 -1.4399 17 6 1.5546 -9.6036 -1.4394 18 7 2.5930 -10.4616 -0.8546 19 6 2.2268 -11.8800 -0.9635 20 6 2.2045 -12.2830 -2.4155 21 6 3.2745 -12.8793 -3.1115 22 7 2.9194 -13.1001 -4.3419 23 8 1.5865 -12.6362 -4.4888 24 7 1.1972 -12.1296 -3.2221 25 6 2.8622 -10.0933 0.5412 26 6 3.3796 -8.6541 0.5997 27 1 4.3062 -8.5772 0.0311 28 8 3.6219 -8.2892 1.9599 29 1 -0.4850 -0.8401 0.0004 30 1 3.1239 -3.7308 -0.8925 31 1 3.1252 -3.7316 0.8875 32 1 3.8011 -6.1834 -0.0032 33 1 1.2557 -7.5112 -1.8597 34 1 2.9384 -8.0649 -2.0408 35 1 0.6415 -9.6852 -0.8498 36 1 1.3556 -9.9208 -2.4631 37 1 2.9584 -12.4862 -0.4294 38 1 1.2395 -12.0348 -0.5283 39 1 4.2384 -13.1192 -2.6876 40 1 1.9429 -10.1727 1.1215 41 1 3.6127 -10.7661 0.9561 42 1 4.2775 -8.8436 2.4050 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099692821.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:35:47 Heat of formation + Delta-G solvation = 14.378441 kcal Electronic energy + Delta-G solvation = -26869.816207 eV Core-core repulsion = 22787.712305 eV Total energy + Delta-G solvation = -4082.103903 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.119 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.95897 -40.34235 -38.76227 -36.98211 -35.05988 -33.95168 -33.18230 -32.51441 -31.80925 -30.16889 -29.25475 -27.26156 -24.84935 -24.16332 -23.61123 -23.28410 -21.37656 -20.56251 -20.29376 -18.33580 -17.94913 -17.53175 -17.21591 -16.52675 -16.45076 -15.97337 -15.63729 -15.50437 -15.10319 -14.91812 -14.57442 -14.31057 -14.05462 -13.83735 -13.53859 -13.30335 -13.23333 -13.11023 -12.49469 -12.38723 -12.34552 -12.18935 -12.07680 -11.95791 -11.72094 -11.64986 -11.56812 -11.28607 -10.91004 -10.83267 -10.52768 -10.16610 -9.57015 -9.48414 -9.13039 -9.02247 -8.94974 -8.21025 -6.65565 -6.61040 -3.98605 0.00224 1.41877 2.12843 2.62503 2.89577 3.00711 3.11369 3.35164 3.38742 3.41112 3.53025 3.59530 3.76281 4.07600 4.23733 4.26592 4.37612 4.43170 4.60120 4.65680 4.75729 4.80690 4.89403 4.92157 4.94019 5.14101 5.18386 5.21997 5.23598 5.37651 5.47021 5.51329 5.78303 5.79051 5.97164 6.03965 6.18654 6.27147 6.38376 6.55113 7.22410 7.63682 7.92990 8.51174 8.53163 9.28320 10.82866 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.020950 B = 0.002002 C = 0.001904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1336.169336 B =13979.213910 C =14698.745369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.035 3.965 3 Si 1.084 2.916 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.607 4.607 8 H 0.065 0.935 9 S -0.116 6.116 10 C -0.130 4.130 11 C 0.534 3.466 12 O -0.519 6.519 13 N -0.725 5.725 14 C 0.156 3.844 15 H 0.092 0.908 16 C -0.125 4.125 17 C 0.049 3.951 18 N -0.531 5.531 19 C 0.118 3.882 20 C 0.079 3.921 21 C 0.064 3.936 22 N -0.274 5.274 23 O 0.027 5.973 24 N -0.265 5.265 25 C 0.030 3.970 26 C 0.103 3.897 27 H 0.072 0.928 28 O -0.553 6.553 29 H 0.278 0.722 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.399 0.601 33 H 0.087 0.913 34 H 0.076 0.924 35 H 0.048 0.952 36 H 0.084 0.916 37 H 0.113 0.887 38 H 0.070 0.930 39 H 0.214 0.786 40 H 0.053 0.947 41 H 0.087 0.913 42 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.472 -29.502 0.447 32.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.176 4.176 3 Si 0.910 3.090 4 H -0.203 1.203 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.755 4.755 8 H 0.084 0.916 9 S 0.110 5.890 10 C -0.281 4.281 11 C 0.320 3.680 12 O -0.393 6.393 13 N -0.378 5.378 14 C 0.050 3.950 15 H 0.110 0.890 16 C -0.164 4.164 17 C -0.079 4.079 18 N -0.258 5.258 19 C -0.011 4.011 20 C -0.104 4.104 21 C -0.140 4.140 22 N -0.016 5.016 23 O -0.115 6.115 24 N -0.009 5.009 25 C -0.099 4.099 26 C 0.043 3.957 27 H 0.090 0.910 28 O -0.357 6.357 29 H 0.090 0.910 30 H 0.110 0.890 31 H 0.111 0.889 32 H 0.233 0.767 33 H 0.106 0.894 34 H 0.094 0.906 35 H 0.066 0.934 36 H 0.102 0.898 37 H 0.131 0.869 38 H 0.088 0.912 39 H 0.230 0.770 40 H 0.071 0.929 41 H 0.106 0.894 42 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 9.410 -27.688 -1.152 29.266 hybrid contribution 2.475 -1.920 1.170 3.344 sum 11.885 -29.608 0.018 31.905 Atomic orbital electron populations 1.70802 1.06696 1.30961 1.43358 1.26062 0.96340 1.02147 0.93046 0.83327 0.74753 0.74199 0.76696 1.20289 1.21141 1.21142 1.23700 0.96017 0.92209 1.63590 0.91631 1.84811 1.08142 0.98793 1.97222 1.23309 1.05089 0.94507 1.05218 1.20272 0.86560 0.86274 0.74913 1.90696 1.15347 1.85544 1.47753 1.45834 1.09903 1.04717 1.77352 1.20877 0.97299 0.81081 0.95769 0.88997 1.21977 1.03140 0.94701 0.96568 1.22275 0.92231 0.92699 1.00693 1.61872 1.44384 1.01330 1.18263 1.20694 1.03046 0.90660 0.86712 1.24526 0.90219 0.96406 0.99221 1.26030 1.01782 0.95714 0.90429 1.79960 0.93616 1.11431 1.16643 1.93445 1.22429 1.69940 1.25722 1.79985 1.19349 1.10375 0.91195 1.22806 1.01689 0.97316 0.88043 1.22001 0.98220 0.91913 0.83579 0.91019 1.86690 1.64933 1.59643 1.24463 0.90996 0.89010 0.88937 0.76683 0.89421 0.90558 0.93406 0.89786 0.86919 0.91180 0.76966 0.92889 0.89432 0.77456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -27.76 13.67 55.49 0.76 -27.00 16 2 C 0.03 1.01 5.49 -17.43 -0.10 0.92 16 3 Si 1.08 25.11 29.92 -169.99 -5.09 20.03 16 4 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 5 H -0.29 -6.24 7.11 56.52 0.40 -5.84 16 6 H -0.29 -6.24 7.11 56.52 0.40 -5.84 16 7 C -0.61 -17.67 9.50 30.94 0.29 -17.37 16 8 H 0.07 1.82 7.80 -52.49 -0.41 1.41 16 9 S -0.12 -3.16 19.60 -107.50 -2.11 -5.27 16 10 C -0.13 -2.66 6.16 36.01 0.22 -2.44 16 11 C 0.53 9.98 7.81 -10.99 -0.09 9.89 16 12 O -0.52 -11.70 15.53 5.55 0.09 -11.61 16 13 N -0.73 -9.68 5.00 -53.69 -0.27 -9.95 16 14 C 0.16 1.76 2.20 -67.81 -0.15 1.62 16 15 H 0.09 1.31 7.58 -51.93 -0.39 0.91 16 16 C -0.12 -1.32 5.67 -26.65 -0.15 -1.47 16 17 C 0.05 0.42 5.30 -3.83 -0.02 0.40 16 18 N -0.53 -3.06 4.65 -236.11 -1.10 -4.16 16 19 C 0.12 0.45 5.52 -4.98 -0.03 0.42 16 20 C 0.08 0.48 5.97 -82.39 -0.49 -0.01 16 21 C 0.06 0.31 11.90 -17.34 -0.21 0.11 16 22 N -0.27 -2.38 12.98 30.69 0.40 -1.98 16 23 O 0.03 0.29 13.71 12.02 0.16 0.46 16 24 N -0.27 -2.52 11.76 33.74 0.40 -2.12 16 25 C 0.03 0.15 5.09 -3.83 -0.02 0.13 16 26 C 0.10 0.76 3.14 -26.64 -0.08 0.67 16 27 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 28 O -0.55 -4.47 13.23 -35.23 -0.47 -4.94 16 29 H 0.28 8.91 7.12 -40.82 -0.29 8.62 16 30 H 0.09 1.74 8.14 -51.92 -0.42 1.31 16 31 H 0.09 1.78 8.14 -51.92 -0.42 1.36 16 32 H 0.40 4.29 8.60 -40.82 -0.35 3.94 16 33 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.08 0.81 6.21 -51.93 -0.32 0.49 16 37 H 0.11 0.04 7.98 -51.93 -0.41 -0.37 16 38 H 0.07 0.28 8.12 -51.93 -0.42 -0.14 16 39 H 0.21 0.04 8.06 -52.49 -0.42 -0.38 16 40 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 41 H 0.09 0.19 8.01 -51.93 -0.42 -0.22 16 42 H 0.38 1.18 9.08 45.56 0.41 1.59 16 LS Contribution 370.67 15.07 5.59 5.59 Total: -1.00 -39.00 370.67 -7.23 -46.23 By element: Atomic # 1 Polarization: 6.64 SS G_CDS: -4.78 Total: 1.86 kcal Atomic # 6 Polarization: -6.32 SS G_CDS: -0.82 Total: -7.13 kcal Atomic # 7 Polarization: -45.40 SS G_CDS: 0.19 Total: -45.21 kcal Atomic # 8 Polarization: -15.87 SS G_CDS: -0.22 Total: -16.09 kcal Atomic # 14 Polarization: 25.11 SS G_CDS: -5.09 Total: 20.03 kcal Atomic # 16 Polarization: -3.16 SS G_CDS: -2.11 Total: -5.27 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -39.00 -7.23 -46.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099692821.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.608 kcal (2) G-P(sol) polarization free energy of solvation -38.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.230 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds