Wall clock time and date at job start Wed Apr 1 2020 00:35:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86803 * 119.99643 * 2 1 4 4 H 1.48494 * 109.47228 * 0.02562 * 3 2 1 5 5 H 1.48501 * 109.46793 * 120.00353 * 3 2 1 6 6 H 1.48500 * 109.47000 * 240.00445 * 3 2 1 7 7 C 1.38798 * 119.99969 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99506 * 179.97438 * 7 2 1 9 9 S 1.76194 * 120.00052 * 359.97438 * 7 2 1 10 10 C 1.81004 * 99.99738 * 179.97438 * 9 7 2 11 11 C 1.50705 * 109.47234 * 179.97438 * 10 9 7 12 12 O 1.21284 * 119.99701 * 0.02562 * 11 10 9 13 13 N 1.34770 * 120.00005 * 180.02562 * 11 10 9 14 14 C 1.46500 * 119.99677 * 180.02562 * 13 11 10 15 15 H 1.08999 * 109.52627 * 324.86679 * 14 13 11 16 16 C 1.53112 * 109.52926 * 84.99805 * 14 13 11 17 17 C 1.53038 * 109.28375 * 177.55842 * 16 14 13 18 18 N 1.46849 * 109.52093 * 300.82197 * 17 16 14 19 19 C 1.46897 * 110.99877 * 185.84124 * 18 17 16 20 20 C 1.50702 * 109.47422 * 66.04197 * 19 18 17 21 21 C 1.40893 * 125.30121 * 94.72314 * 20 19 18 22 22 N 1.29956 * 109.39236 * 179.80165 * 21 20 19 23 23 O 1.41886 * 107.41111 * 0.44249 * 22 21 20 24 24 N 1.29945 * 125.30522 * 275.02390 * 20 19 18 25 25 C 1.46843 * 111.20136 * 61.74016 * 18 17 16 26 26 C 1.53045 * 109.52087 * 298.25801 * 25 18 17 27 27 H 1.08996 * 109.50286 * 299.23169 * 26 25 18 28 28 O 1.42898 * 109.50076 * 179.11726 * 26 25 18 29 29 H 0.97005 * 119.99723 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47255 * 299.99975 * 10 9 7 31 31 H 1.09001 * 109.46783 * 60.00283 * 10 9 7 32 32 H 0.96995 * 120.00238 * 359.97438 * 13 11 10 33 33 H 1.09000 * 109.50173 * 297.49859 * 16 14 13 34 34 H 1.09002 * 109.50210 * 57.61309 * 16 14 13 35 35 H 1.08998 * 109.46270 * 60.83333 * 17 16 14 36 36 H 1.09004 * 109.46449 * 180.81412 * 17 16 14 37 37 H 1.09002 * 109.47268 * 186.04747 * 19 18 17 38 38 H 1.09002 * 109.46892 * 306.04402 * 19 18 17 39 39 H 1.07998 * 125.30651 * 0.02562 * 21 20 19 40 40 H 1.09000 * 109.45889 * 58.27253 * 25 18 17 41 41 H 1.08997 * 109.46474 * 178.24186 * 25 18 17 42 42 H 0.96705 * 114.00021 * 60.19517 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 1.2852 2.7465 0.0006 5 1 3.1040 1.6964 1.2125 6 1 3.1039 1.6966 -1.2126 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2019 -0.0010 9 16 1.1294 -2.7279 -0.0005 10 6 2.5160 -3.8913 -0.0021 11 6 1.9876 -5.3027 -0.0017 12 8 0.7913 -5.5023 -0.0009 13 7 2.8444 -6.3430 -0.0022 14 6 2.3307 -7.7150 -0.0024 15 1 1.4163 -7.7617 0.5891 16 6 2.0329 -8.1499 -1.4399 17 6 1.5546 -9.6036 -1.4394 18 7 2.5930 -10.4616 -0.8546 19 6 2.2268 -11.8800 -0.9635 20 6 2.2045 -12.2830 -2.4155 21 6 3.2745 -12.8793 -3.1115 22 7 2.9194 -13.1001 -4.3419 23 8 1.5865 -12.6362 -4.4888 24 7 1.1972 -12.1296 -3.2221 25 6 2.8622 -10.0933 0.5412 26 6 3.3796 -8.6541 0.5997 27 1 4.3062 -8.5772 0.0311 28 8 3.6219 -8.2892 1.9599 29 1 -0.4850 -0.8401 0.0004 30 1 3.1239 -3.7308 -0.8925 31 1 3.1252 -3.7316 0.8875 32 1 3.8011 -6.1834 -0.0032 33 1 1.2557 -7.5112 -1.8597 34 1 2.9384 -8.0649 -2.0408 35 1 0.6415 -9.6852 -0.8498 36 1 1.3556 -9.9208 -2.4631 37 1 2.9584 -12.4862 -0.4294 38 1 1.2395 -12.0348 -0.5283 39 1 4.2384 -13.1192 -2.6876 40 1 1.9429 -10.1727 1.1215 41 1 3.6127 -10.7661 0.9561 42 1 4.2775 -8.8436 2.4050 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099692821.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:35:45 Heat of formation + Delta-G solvation = -20.690549 kcal Electronic energy + Delta-G solvation = -26871.336913 eV Core-core repulsion = 22787.712305 eV Total energy + Delta-G solvation = -4083.624608 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.119 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.46469 -41.29072 -39.88365 -37.56366 -36.02140 -34.75940 -34.67395 -33.75094 -32.79097 -31.00547 -30.37327 -28.00911 -27.05940 -24.80721 -24.23990 -23.90632 -21.85474 -21.79069 -21.22545 -20.38822 -18.49833 -18.21631 -17.99975 -17.87841 -17.22147 -16.64639 -16.60156 -16.41987 -16.03928 -15.93734 -15.70334 -15.53836 -15.12517 -14.97821 -14.70104 -14.49951 -14.09534 -14.06508 -13.85807 -13.69188 -13.53559 -13.05628 -12.83351 -12.73869 -12.65631 -12.53626 -12.32798 -12.23210 -12.01682 -11.95654 -11.64814 -11.51282 -11.15015 -11.10256 -10.91801 -10.33923 -10.20232 -9.62335 -8.93579 -8.88552 -6.28799 -0.50340 1.02474 1.18224 1.50009 1.51548 1.54220 1.60546 1.80732 2.13614 2.15869 2.34486 2.62575 2.99608 3.01444 3.11170 3.16419 3.60048 3.74054 3.79206 3.88446 3.93673 4.03633 4.08450 4.15131 4.19501 4.31939 4.36269 4.45323 4.47443 4.57264 4.64509 4.67913 4.74270 4.79377 4.92875 5.07741 5.39310 5.63153 5.66896 5.76507 5.87879 6.13443 6.41284 6.94987 7.05443 7.15177 8.49745 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.020950 B = 0.002002 C = 0.001904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1336.169336 B =13979.213910 C =14698.745369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C -0.021 4.021 3 Si 1.138 2.862 4 H -0.280 1.280 5 H -0.262 1.262 6 H -0.263 1.263 7 C -0.613 4.613 8 H 0.076 0.924 9 S -0.198 6.198 10 C -0.108 4.108 11 C 0.534 3.466 12 O -0.567 6.567 13 N -0.700 5.700 14 C 0.150 3.850 15 H 0.057 0.943 16 C -0.118 4.118 17 C 0.057 3.943 18 N -0.524 5.524 19 C 0.117 3.883 20 C 0.093 3.907 21 C 0.092 3.908 22 N -0.307 5.307 23 O -0.028 6.028 24 N -0.303 5.303 25 C 0.035 3.965 26 C 0.113 3.887 27 H 0.095 0.905 28 O -0.576 6.576 29 H 0.260 0.740 30 H 0.112 0.888 31 H 0.110 0.890 32 H 0.416 0.584 33 H 0.048 0.952 34 H 0.088 0.912 35 H 0.034 0.966 36 H 0.072 0.928 37 H 0.167 0.833 38 H 0.069 0.931 39 H 0.268 0.732 40 H 0.042 0.958 41 H 0.137 0.863 42 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.007 -31.300 1.970 35.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.224 4.224 3 Si 0.955 3.045 4 H -0.206 1.206 5 H -0.187 1.187 6 H -0.187 1.187 7 C -0.760 4.760 8 H 0.094 0.906 9 S 0.029 5.971 10 C -0.259 4.259 11 C 0.319 3.681 12 O -0.446 6.446 13 N -0.352 5.352 14 C 0.044 3.956 15 H 0.075 0.925 16 C -0.157 4.157 17 C -0.071 4.071 18 N -0.251 5.251 19 C -0.011 4.011 20 C -0.091 4.091 21 C -0.111 4.111 22 N -0.054 5.054 23 O -0.160 6.160 24 N -0.051 5.051 25 C -0.093 4.093 26 C 0.053 3.947 27 H 0.113 0.887 28 O -0.385 6.385 29 H 0.071 0.929 30 H 0.130 0.870 31 H 0.128 0.872 32 H 0.254 0.746 33 H 0.067 0.933 34 H 0.106 0.894 35 H 0.052 0.948 36 H 0.090 0.910 37 H 0.184 0.816 38 H 0.087 0.913 39 H 0.284 0.716 40 H 0.060 0.940 41 H 0.155 0.845 42 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges 13.976 -29.562 0.338 32.701 hybrid contribution 1.169 -1.505 0.810 2.070 sum 15.145 -31.066 1.149 34.581 Atomic orbital electron populations 1.70923 1.08033 1.29954 1.45936 1.27889 0.96333 1.06480 0.91691 0.82711 0.73927 0.69374 0.78497 1.20567 1.18679 1.18727 1.24031 0.96525 0.92715 1.62767 0.90593 1.85077 1.13299 1.01254 1.97476 1.23214 1.02108 0.93659 1.06962 1.20025 0.86326 0.86687 0.75014 1.90687 1.17417 1.86041 1.50405 1.45619 1.10141 1.04569 1.74870 1.21089 0.97787 0.80580 0.96104 0.92485 1.21829 1.02355 0.95471 0.96016 1.22053 0.92757 0.92108 1.00230 1.61848 1.42559 1.01893 1.18804 1.21038 1.04883 0.89819 0.85359 1.25097 0.89591 0.94557 0.99831 1.26881 1.02828 0.92538 0.88872 1.79932 0.92980 1.13508 1.18987 1.93423 1.24065 1.71522 1.26993 1.79963 1.21408 1.12114 0.91565 1.22869 1.02590 0.96612 0.87245 1.21880 0.97448 0.91737 0.83598 0.88744 1.86636 1.66207 1.60934 1.24691 0.92939 0.86999 0.87166 0.74644 0.93300 0.89367 0.94768 0.90981 0.81594 0.91336 0.71645 0.93968 0.84534 0.74643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -58.91 13.67 21.65 0.30 -58.62 16 2 C -0.02 -1.24 5.49 84.86 0.47 -0.77 16 3 Si 1.14 49.71 29.92 68.60 2.05 51.77 16 4 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 5 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 6 H -0.26 -10.44 7.11 99.48 0.71 -9.74 16 7 C -0.61 -35.83 9.50 67.95 0.65 -35.19 16 8 H 0.08 4.14 7.80 -2.91 -0.02 4.12 16 9 S -0.20 -11.13 19.60 -56.49 -1.11 -12.24 16 10 C -0.11 -4.38 6.16 71.24 0.44 -3.94 16 11 C 0.53 20.17 7.81 87.66 0.68 20.86 16 12 O -0.57 -26.86 15.53 -3.04 -0.05 -26.91 16 13 N -0.70 -17.92 5.00 -442.16 -2.21 -20.13 16 14 C 0.15 3.28 2.20 45.07 0.10 3.38 16 15 H 0.06 1.69 7.58 -2.39 -0.02 1.67 16 16 C -0.12 -2.49 5.67 30.64 0.17 -2.32 16 17 C 0.06 0.97 5.30 86.33 0.46 1.43 16 18 N -0.52 -4.16 4.65 -900.92 -4.19 -8.34 16 19 C 0.12 0.40 5.52 85.56 0.47 0.87 16 20 C 0.09 0.91 5.97 43.49 0.26 1.17 16 21 C 0.09 0.60 11.90 85.62 1.02 1.62 16 22 N -0.31 -5.09 12.98 -56.80 -0.74 -5.83 16 23 O -0.03 -0.64 13.71 70.14 0.96 0.32 16 24 N -0.30 -5.84 11.76 -47.16 -0.55 -6.40 16 25 C 0.03 0.19 5.09 86.33 0.44 0.63 16 26 C 0.11 1.26 3.14 30.65 0.10 1.36 16 27 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 28 O -0.58 -7.23 13.23 -148.98 -1.97 -9.20 16 29 H 0.26 17.46 7.12 -92.70 -0.66 16.80 16 30 H 0.11 4.08 8.14 -2.40 -0.02 4.06 16 31 H 0.11 4.08 8.14 -2.39 -0.02 4.06 16 32 H 0.42 7.82 8.60 -92.71 -0.80 7.02 16 33 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 35 H 0.03 0.66 8.14 -2.39 -0.02 0.64 16 36 H 0.07 1.42 6.21 -2.39 -0.01 1.41 16 37 H 0.17 -1.10 7.98 -2.39 -0.02 -1.12 16 38 H 0.07 0.34 8.12 -2.39 -0.02 0.33 16 39 H 0.27 -1.56 8.06 -2.91 -0.02 -1.59 16 40 H 0.04 0.37 8.14 -2.39 -0.02 0.35 16 41 H 0.14 -0.42 8.01 -2.39 -0.02 -0.44 16 42 H 0.40 0.58 9.08 -74.05 -0.67 -0.09 16 Total: -1.00 -94.08 370.67 -2.53 -96.61 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: -0.28 Total: 9.89 kcal Atomic # 6 Polarization: -16.17 SS G_CDS: 5.25 Total: -10.92 kcal Atomic # 7 Polarization: -91.93 SS G_CDS: -7.39 Total: -99.32 kcal Atomic # 8 Polarization: -34.74 SS G_CDS: -1.06 Total: -35.79 kcal Atomic # 14 Polarization: 49.71 SS G_CDS: 2.05 Total: 51.77 kcal Atomic # 16 Polarization: -11.13 SS G_CDS: -1.11 Total: -12.24 kcal Total: -94.08 -2.53 -96.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099692821.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.923 kcal (2) G-P(sol) polarization free energy of solvation -94.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds