Wall clock time and date at job start Wed Apr 1 2020 00:24:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86795 * 120.00330 * 2 1 4 4 H 1.48495 * 109.47383 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47375 * 300.00381 * 3 2 1 6 6 H 1.48505 * 109.46965 * 60.00065 * 3 2 1 7 7 C 1.38801 * 119.99737 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99873 * 180.02562 * 7 2 1 9 9 S 1.76198 * 120.00096 * 359.97438 * 7 2 1 10 10 C 1.81002 * 99.99878 * 180.02562 * 9 7 2 11 11 C 1.50706 * 109.47200 * 179.97438 * 10 9 7 12 12 O 1.21279 * 119.99507 * 0.02562 * 11 10 9 13 13 N 1.34774 * 120.00020 * 179.97438 * 11 10 9 14 14 C 1.46496 * 119.99544 * 180.02562 * 13 11 10 15 15 H 1.08992 * 115.52238 * 9.57890 * 14 13 11 16 16 C 1.53004 * 117.44007 * 224.22758 * 14 13 11 17 17 H 1.09003 * 119.52880 * 4.09280 * 16 14 13 18 18 C 1.57594 * 116.16982 * 161.50085 * 16 14 13 19 19 N 1.48566 * 104.65451 * 87.33697 * 18 16 14 20 20 C 1.46897 * 110.99882 * 200.33939 * 19 18 16 21 21 C 1.50707 * 109.46889 * 285.41720 * 20 19 18 22 22 O 1.21227 * 120.00317 * 0.02562 * 21 20 19 23 23 N 1.34775 * 119.99856 * 180.02562 * 21 20 19 24 24 C 1.34770 * 120.00020 * 180.02562 * 23 21 20 25 25 N 1.34777 * 120.00417 * 179.97438 * 24 23 21 26 26 O 1.21538 * 120.00240 * 359.97438 * 24 23 21 27 27 C 1.48559 * 104.22202 * 319.89380 * 19 18 16 28 28 C 1.53003 * 117.44108 * 155.00191 * 14 13 11 29 29 H 1.09003 * 119.52816 * 355.90651 * 28 14 13 30 30 H 0.97001 * 119.99701 * 0.02562 * 1 2 3 31 31 H 1.09001 * 109.46925 * 60.00038 * 10 9 7 32 32 H 1.09000 * 109.47556 * 300.00312 * 10 9 7 33 33 H 0.96994 * 119.99756 * 0.02562 * 13 11 10 34 34 H 1.09001 * 110.91138 * 328.27484 * 18 16 14 35 35 H 1.08998 * 109.95952 * 205.92170 * 18 16 14 36 36 H 1.08998 * 109.47852 * 45.41515 * 20 19 18 37 37 H 1.09005 * 109.47323 * 165.42095 * 20 19 18 38 38 H 0.97004 * 120.00301 * 359.97438 * 23 21 20 39 39 H 0.97002 * 119.99775 * 0.02562 * 25 24 23 40 40 H 0.97003 * 120.00760 * 180.02562 * 25 24 23 41 41 H 1.09000 * 110.41080 * 280.70976 * 27 19 18 42 42 H 1.08992 * 110.41124 * 158.25945 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 3.7103 1.3463 0.0006 5 1 1.8916 2.3964 -1.2124 6 1 1.8916 2.3964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 16 1.1292 -2.7280 -0.0005 10 6 2.5158 -3.8914 -0.0005 11 6 1.9873 -5.3028 0.0001 12 8 0.7910 -5.5023 0.0000 13 7 2.8440 -6.3432 -0.0003 14 6 2.3302 -7.7151 -0.0003 15 1 1.2572 -7.8147 -0.1636 16 6 2.9945 -8.7167 0.9465 17 1 3.7706 -8.3752 1.6314 18 6 2.1707 -10.0214 1.2674 19 7 2.5311 -10.9698 0.1822 20 6 1.5205 -12.0278 0.0506 21 6 1.6649 -13.0049 1.1888 22 8 2.5244 -12.8363 2.0270 23 7 0.8386 -14.0661 1.2749 24 6 0.9674 -14.9396 2.2931 25 7 0.1408 -16.0006 2.3796 26 8 1.8291 -14.7706 3.1335 27 6 2.5801 -10.1255 -1.0391 28 6 3.2352 -8.8070 -0.5745 29 1 4.1905 -8.5326 -1.0219 30 1 -0.4850 0.8401 -0.0004 31 1 3.1244 -3.7314 0.8895 32 1 3.1245 -3.7314 -0.8905 33 1 3.8007 -6.1835 -0.0006 34 1 1.0999 -9.8183 1.2547 35 1 2.4695 -10.4212 2.2364 36 1 0.5250 -11.5847 0.0763 37 1 1.6616 -12.5494 -0.8961 38 1 0.1507 -14.2008 0.6045 39 1 -0.5467 -16.1357 1.7087 40 1 0.2333 -16.6291 3.1126 41 1 1.5733 -9.9386 -1.4127 42 1 3.1890 -10.6026 -1.8069 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001113897034.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:24:18 Heat of formation + Delta-G solvation = -47.436092 kcal Electronic energy + Delta-G solvation = -25899.045949 eV Core-core repulsion = 21814.261567 eV Total energy + Delta-G solvation = -4084.784382 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.119 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.56277 -40.40114 -38.98364 -38.30656 -35.30602 -35.08739 -33.82651 -32.74610 -32.44481 -29.46913 -28.64145 -28.11233 -25.51556 -24.17803 -22.32551 -21.15686 -20.96777 -20.62890 -20.39385 -19.19099 -18.08937 -17.83281 -17.04967 -16.60009 -16.53833 -16.36927 -15.74138 -15.30137 -15.14218 -14.90718 -14.82008 -14.59178 -14.21889 -13.98687 -13.66366 -13.33358 -13.07124 -12.86383 -12.69529 -12.40445 -12.20025 -11.95138 -11.64191 -11.38028 -11.08492 -11.04006 -10.95770 -10.78026 -10.55564 -10.31066 -10.30211 -10.03637 -9.82469 -9.51693 -9.09221 -8.89794 -8.72623 -8.26593 -6.52602 -6.23776 -3.94512 1.68960 1.93595 2.82684 2.84351 2.86801 3.20738 3.24437 3.30015 3.41784 3.54610 3.60181 3.74825 4.08086 4.18451 4.35415 4.45903 4.56249 4.65719 4.68053 4.84057 4.94027 5.05076 5.11807 5.14246 5.26315 5.46933 5.49023 5.61226 5.77042 5.84320 5.85217 5.86971 5.94510 6.10358 6.21815 6.28889 6.41380 6.56337 6.92413 7.58015 7.60459 7.62535 7.92577 8.33657 8.50946 9.21936 10.83749 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.034087 B = 0.001550 C = 0.001529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.226647 B =18058.533881 C =18312.951487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.536 4.536 8 H 0.074 0.926 9 S -0.059 6.059 10 C -0.153 4.153 11 C 0.538 3.462 12 O -0.514 6.514 13 N -0.709 5.709 14 C 0.120 3.880 15 H 0.133 0.867 16 C -0.168 4.168 17 H 0.125 0.875 18 C 0.062 3.938 19 N -0.494 5.494 20 C 0.027 3.973 21 C 0.515 3.485 22 O -0.442 6.442 23 N -0.694 5.694 24 C 0.696 3.304 25 N -0.859 5.859 26 O -0.533 6.533 27 C 0.066 3.934 28 C -0.176 4.176 29 H 0.121 0.879 30 H 0.268 0.732 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.402 0.598 34 H 0.051 0.949 35 H 0.097 0.903 36 H 0.077 0.923 37 H 0.113 0.887 38 H 0.409 0.591 39 H 0.399 0.601 40 H 0.420 0.580 41 H 0.054 0.946 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.148 -31.769 -3.007 31.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.746 3.254 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.684 4.684 8 H 0.092 0.908 9 S 0.167 5.833 10 C -0.304 4.304 11 C 0.325 3.675 12 O -0.388 6.388 13 N -0.360 5.360 14 C 0.013 3.987 15 H 0.151 0.849 16 C -0.189 4.189 17 H 0.143 0.857 18 C -0.065 4.065 19 N -0.218 5.218 20 C -0.105 4.105 21 C 0.299 3.701 22 O -0.307 6.307 23 N -0.362 5.362 24 C 0.394 3.606 25 N -0.430 5.430 26 O -0.404 6.404 27 C -0.061 4.061 28 C -0.196 4.196 29 H 0.139 0.861 30 H 0.078 0.922 31 H 0.110 0.890 32 H 0.110 0.890 33 H 0.236 0.764 34 H 0.069 0.931 35 H 0.115 0.885 36 H 0.095 0.905 37 H 0.131 0.869 38 H 0.244 0.756 39 H 0.228 0.772 40 H 0.253 0.747 41 H 0.072 0.928 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 0.850 -31.814 -1.734 31.872 hybrid contribution 0.955 1.144 -0.621 1.614 sum 1.805 -30.670 -2.354 30.813 Atomic orbital electron populations 1.70027 1.05963 1.27380 1.46918 1.24993 0.95030 0.99054 0.94486 0.86106 0.79597 0.81825 0.77910 1.19598 1.20553 1.20553 1.22912 0.94973 0.91587 1.58913 0.90818 1.85395 1.04779 0.96354 1.96731 1.23537 1.06740 0.94967 1.05145 1.20358 0.86454 0.86136 0.74577 1.90694 1.15364 1.85482 1.47249 1.45370 1.09972 1.03864 1.76828 1.21684 0.97804 0.79036 1.00216 0.84907 1.24627 1.03573 0.97597 0.93057 0.85687 1.23288 0.97120 0.89643 0.96493 1.65319 1.42458 1.09764 1.04251 1.22153 0.96502 0.94272 0.97559 1.20778 0.80840 0.80869 0.87603 1.90857 1.29933 1.71141 1.38726 1.44167 1.37064 1.26516 1.28463 1.16152 0.82354 0.80122 0.81949 1.43101 1.37907 1.28402 1.33540 1.91140 1.34700 1.74609 1.39999 1.22617 0.99982 0.91066 0.92443 1.23807 1.02131 0.96426 0.97283 0.86135 0.92216 0.89011 0.89010 0.76413 0.93076 0.88476 0.90529 0.86903 0.75585 0.77249 0.74737 0.92808 0.88957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.00 13.22 55.49 0.73 -25.26 16 2 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 3 Si 0.92 21.30 29.55 -169.99 -5.02 16.28 16 4 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 5 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 6 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.54 -15.15 9.50 30.94 0.29 -14.86 16 8 H 0.07 1.98 7.80 -52.48 -0.41 1.57 16 9 S -0.06 -1.59 20.57 -107.50 -2.21 -3.80 16 10 C -0.15 -3.03 6.16 36.01 0.22 -2.81 16 11 C 0.54 9.81 7.85 -10.98 -0.09 9.73 16 12 O -0.51 -11.39 15.43 5.56 0.09 -11.30 16 13 N -0.71 -9.33 5.56 -53.81 -0.30 -9.63 16 14 C 0.12 1.41 5.92 -67.93 -0.40 1.01 16 15 H 0.13 1.77 7.40 -51.93 -0.38 1.38 16 16 C -0.17 -1.74 7.33 -87.45 -0.64 -2.38 16 17 H 0.13 1.28 8.14 -51.93 -0.42 0.86 16 18 C 0.06 0.63 5.78 -0.39 0.00 0.63 16 19 N -0.49 -4.35 4.98 -229.22 -1.14 -5.49 16 20 C 0.03 0.15 5.32 -4.97 -0.03 0.13 16 21 C 0.51 4.47 7.62 -10.98 -0.08 4.39 16 22 O -0.44 -6.38 13.62 -18.20 -0.25 -6.63 16 23 N -0.69 -3.62 5.24 -15.78 -0.08 -3.70 16 24 C 0.70 5.57 8.78 -86.92 -0.76 4.81 16 25 N -0.86 -2.28 8.88 27.63 0.25 -2.03 16 26 O -0.53 -7.68 15.58 -18.47 -0.29 -7.96 16 27 C 0.07 0.50 6.26 -2.18 -0.01 0.48 16 28 C -0.18 -1.60 6.97 -89.23 -0.62 -2.23 16 29 H 0.12 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 31 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 32 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 33 H 0.40 4.12 8.83 -40.82 -0.36 3.76 16 34 H 0.05 0.49 7.75 -51.93 -0.40 0.09 16 35 H 0.10 1.16 7.23 -51.93 -0.38 0.79 16 36 H 0.08 0.29 7.77 -51.93 -0.40 -0.11 16 37 H 0.11 0.32 8.08 -51.93 -0.42 -0.10 16 38 H 0.41 0.02 8.71 -40.82 -0.36 -0.33 16 39 H 0.40 -0.47 8.84 -40.82 -0.36 -0.84 16 40 H 0.42 0.90 8.93 -40.82 -0.36 0.54 16 41 H 0.05 0.36 8.00 -51.93 -0.42 -0.05 16 42 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 LS Contribution 375.29 15.07 5.66 5.66 Total: -1.00 -42.49 375.29 -10.29 -52.78 By element: Atomic # 1 Polarization: 5.71 SS G_CDS: -5.50 Total: 0.21 kcal Atomic # 6 Polarization: 3.11 SS G_CDS: -2.22 Total: 0.89 kcal Atomic # 7 Polarization: -45.57 SS G_CDS: -0.54 Total: -46.11 kcal Atomic # 8 Polarization: -25.45 SS G_CDS: -0.45 Total: -25.90 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.80 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -42.49 -10.29 -52.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001113897034.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.346 kcal (2) G-P(sol) polarization free energy of solvation -42.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds