Wall clock time and date at job start Wed Apr 1 2020 01:07:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81406 * 1 3 3 C 1.81402 * 103.00023 * 2 1 4 4 C 1.52996 * 109.46877 * 180.02562 * 3 2 1 5 5 O 1.42898 * 109.47049 * 179.97438 * 4 3 2 6 6 N 1.41606 * 114.00240 * 179.97438 * 5 4 3 7 7 C 1.34769 * 120.00142 * 180.02562 * 6 5 4 8 8 O 1.21363 * 120.00278 * 359.97438 * 7 6 5 9 9 C 1.49351 * 119.99838 * 180.02562 * 7 6 5 10 10 O 1.21383 * 119.99897 * 359.97438 * 9 7 6 11 11 N 1.34777 * 119.99645 * 180.27494 * 9 7 6 12 12 C 1.39932 * 119.99544 * 179.72660 * 11 9 7 13 13 C 1.40455 * 125.98227 * 359.70504 * 12 11 9 14 14 C 1.35214 * 107.86662 * 179.89124 * 13 12 11 15 15 C 1.50705 * 126.06347 * 180.13511 * 14 13 12 16 16 N 1.34994 * 107.87788 * 0.37482 * 14 13 12 17 17 C 1.46499 * 125.97263 * 179.73744 * 16 14 13 18 18 C 1.50698 * 109.47467 * 270.00296 * 17 16 14 19 19 H 1.07998 * 119.99962 * 359.97438 * 18 17 16 20 20 C 1.37870 * 119.99884 * 179.97438 * 18 17 16 21 21 N 1.31518 * 120.00509 * 0.02562 * 20 18 17 22 22 Si 1.86809 * 119.99962 * 179.97438 * 20 18 17 23 23 H 1.48492 * 109.46995 * 59.99798 * 22 20 18 24 24 H 1.48498 * 109.47116 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.46807 * 300.00191 * 22 20 18 26 26 N 1.31275 * 125.97830 * 180.02562 * 12 11 9 27 27 H 1.08991 * 109.47345 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46781 * 299.99907 * 1 2 3 29 29 H 1.09005 * 109.47070 * 59.99674 * 1 2 3 30 30 H 1.08992 * 109.46765 * 60.00226 * 3 2 1 31 31 H 1.08998 * 109.46991 * 300.00181 * 3 2 1 32 32 H 1.08997 * 109.47602 * 60.00031 * 4 3 2 33 33 H 1.09004 * 109.47523 * 300.00199 * 4 3 2 34 34 H 0.97001 * 119.99505 * 359.97438 * 6 5 4 35 35 H 0.97001 * 120.00485 * 359.71515 * 11 9 7 36 36 H 1.08000 * 126.06682 * 0.02562 * 13 12 11 37 37 H 1.09007 * 109.46752 * 270.28430 * 15 14 13 38 38 H 1.09000 * 109.47151 * 30.27775 * 15 14 13 39 39 H 1.09000 * 109.47425 * 150.28215 * 15 14 13 40 40 H 1.09000 * 109.47034 * 30.00255 * 17 16 14 41 41 H 1.08995 * 109.46773 * 149.99944 * 17 16 14 42 42 H 0.96992 * 120.00036 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7424 1.9399 -0.0006 5 8 4.0639 3.3322 -0.0012 6 7 5.4539 3.6024 -0.0013 7 6 5.8927 4.8767 -0.0013 8 8 5.0965 5.7927 -0.0018 9 6 7.3588 5.1616 -0.0020 10 8 8.1550 4.2455 -0.0020 11 7 7.7975 6.4359 0.0036 12 6 9.1712 6.7028 0.0088 13 6 10.1980 5.7445 0.0147 14 6 11.3793 6.4023 0.0160 15 6 12.7471 5.7696 0.0190 16 7 11.1164 7.7264 0.0195 17 6 12.1116 8.8014 0.0273 18 6 12.4471 9.1651 1.4508 19 1 11.9667 8.6476 2.2679 20 6 13.3674 10.1585 1.7098 21 7 13.9521 10.7891 0.7148 22 14 13.7827 10.6098 3.4744 23 1 14.3324 9.4205 4.1732 24 1 14.7917 11.6994 3.4822 25 1 12.5538 11.0688 4.1702 26 7 9.7256 7.8927 0.0150 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8032 2.2370 0.8900 31 1 1.8032 2.2371 -0.8900 32 1 4.1610 1.4704 -0.8908 33 1 4.1617 1.4701 0.8891 34 1 6.0902 2.8703 -0.0006 35 1 7.1612 7.1681 0.0039 36 1 10.0672 4.6725 0.0157 37 1 13.0730 5.6136 1.0474 38 1 12.7051 4.8110 -0.4982 39 1 13.4525 6.4265 -0.4900 40 1 13.0136 8.4652 -0.4840 41 1 11.7075 9.6743 -0.4851 42 1 14.5997 11.4877 0.8971 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116898540.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:07:38 Heat of formation + Delta-G solvation = 23.357487 kcal Electronic energy + Delta-G solvation = -25884.869215 eV Core-core repulsion = 21803.154673 eV Total energy + Delta-G solvation = -4081.714542 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.119 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.16685 -40.26564 -38.81992 -37.81132 -35.28293 -33.56883 -33.33221 -31.57251 -31.08134 -30.90181 -29.52622 -27.08574 -26.48683 -25.25206 -23.86785 -22.92797 -21.39070 -20.01185 -19.82379 -18.86733 -17.85916 -16.84638 -16.82757 -16.73074 -16.54602 -16.11775 -15.98448 -15.40501 -14.99294 -14.73591 -14.42005 -14.37894 -14.30638 -14.19208 -13.88812 -13.27510 -13.19149 -12.89337 -12.66990 -12.53701 -12.40118 -12.30734 -12.01236 -11.53239 -11.51840 -11.47030 -11.15260 -10.83631 -10.70597 -10.62892 -10.28419 -10.06076 -9.72677 -9.64192 -9.49218 -8.66931 -8.34306 -8.09430 -7.63075 -6.28909 -4.36801 0.57780 1.05869 1.28478 1.87269 2.56832 2.69054 2.92186 3.21868 3.26071 3.29918 3.57277 3.58717 3.98868 4.14529 4.15914 4.19765 4.29034 4.53038 4.54606 4.63344 4.91878 5.04667 5.05229 5.10730 5.26989 5.57440 5.78731 6.01085 6.04717 6.10269 6.18455 6.33711 6.45009 6.63758 6.83213 6.99329 7.20291 7.32046 7.57750 7.62733 7.80278 7.83907 7.93750 8.49827 8.69432 9.29825 10.78594 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.029074 B = 0.001585 C = 0.001562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.819964 B =17656.556294 C =17918.259788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 S -0.239 6.239 3 C -0.087 4.087 4 C 0.046 3.954 5 O -0.133 6.133 6 N -0.568 5.568 7 C 0.528 3.472 8 O -0.495 6.495 9 C 0.529 3.471 10 O -0.495 6.495 11 N -0.592 5.592 12 C 0.256 3.744 13 C -0.288 4.288 14 C 0.094 3.906 15 C -0.085 4.085 16 N -0.311 5.311 17 C 0.257 3.743 18 C -0.539 4.539 19 H 0.064 0.936 20 C 0.067 3.933 21 N -0.891 5.891 22 Si 0.907 3.093 23 H -0.274 1.274 24 H -0.284 1.284 25 H -0.274 1.274 26 N -0.308 5.308 27 H 0.106 0.894 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.097 0.903 31 H 0.097 0.903 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.424 0.576 35 H 0.425 0.575 36 H 0.161 0.839 37 H 0.079 0.921 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.057 0.943 41 H 0.054 0.946 42 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.252 -21.042 -2.965 29.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.289 4.289 2 S -0.015 6.015 3 C -0.237 4.237 4 C -0.032 4.032 5 O -0.138 6.138 6 N -0.272 5.272 7 C 0.309 3.691 8 O -0.367 6.367 9 C 0.308 3.692 10 O -0.368 6.368 11 N -0.241 5.241 12 C 0.004 3.996 13 C -0.319 4.319 14 C -0.037 4.037 15 C -0.143 4.143 16 N -0.093 5.093 17 C 0.140 3.860 18 C -0.577 4.577 19 H 0.083 0.917 20 C -0.136 4.136 21 N -0.529 5.529 22 Si 0.734 3.266 23 H -0.199 1.199 24 H -0.209 1.209 25 H -0.200 1.200 26 N -0.138 5.138 27 H 0.125 0.875 28 H 0.099 0.901 29 H 0.099 0.901 30 H 0.115 0.885 31 H 0.115 0.885 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.266 0.734 35 H 0.263 0.737 36 H 0.179 0.821 37 H 0.097 0.903 38 H 0.093 0.907 39 H 0.093 0.907 40 H 0.074 0.926 41 H 0.072 0.928 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -19.747 -20.228 -3.019 28.430 hybrid contribution -0.687 0.392 0.970 1.252 sum -20.435 -19.835 -2.049 28.552 Atomic orbital electron populations 1.23438 0.92987 1.06998 1.05459 1.86881 1.08411 1.08008 1.98169 1.23127 0.97159 0.96238 1.07142 1.22630 0.94569 0.82628 1.03386 1.90582 1.01966 1.23890 1.97333 1.46926 0.96268 1.08171 1.75805 1.19887 0.88985 0.81813 0.78408 1.90827 1.55763 1.43571 1.46527 1.19240 0.87430 0.83391 0.79188 1.90743 1.55308 1.43969 1.46743 1.41837 1.05161 1.07857 1.69221 1.18822 0.82974 0.93220 1.04593 1.21227 0.88752 1.00615 1.21288 1.21091 0.97163 0.84902 1.00571 1.20356 0.90703 0.99903 1.03337 1.49103 1.02924 1.05920 1.51364 1.19757 0.83625 0.83546 0.99106 1.21261 1.24669 1.20561 0.91221 0.91736 1.24914 0.95290 0.95263 0.98179 1.69903 1.27625 1.24085 1.31260 0.86403 0.78303 0.78226 0.83698 1.19916 1.20926 1.19957 1.77347 0.89799 1.18377 1.28301 0.87539 0.90054 0.90063 0.88461 0.88470 0.90445 0.90431 0.73389 0.73735 0.82121 0.90258 0.90681 0.90711 0.92571 0.92810 0.92136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.39 10.76 101.05 1.09 0.69 16 2 S -0.24 -1.39 22.38 -107.50 -2.41 -3.80 16 3 C -0.09 -0.48 6.31 37.16 0.23 -0.25 16 4 C 0.05 0.29 6.23 37.16 0.23 0.52 16 5 O -0.13 -1.32 11.11 -29.65 -0.33 -1.65 16 6 N -0.57 -5.71 6.38 30.88 0.20 -5.51 16 7 C 0.53 6.74 8.03 -11.64 -0.09 6.65 16 8 O -0.49 -7.59 16.88 -12.69 -0.21 -7.80 16 9 C 0.53 7.42 7.85 -11.63 -0.09 7.33 16 10 O -0.49 -7.36 13.60 5.47 0.07 -7.28 16 11 N -0.59 -9.34 5.43 -11.58 -0.06 -9.40 16 12 C 0.26 5.01 8.10 -154.55 -1.25 3.76 16 13 C -0.29 -5.50 9.51 -39.82 -0.38 -5.87 16 14 C 0.09 1.87 6.92 -82.28 -0.57 1.31 16 15 C -0.08 -1.35 10.11 36.01 0.36 -0.98 16 16 N -0.31 -7.10 3.59 -58.33 -0.21 -7.31 16 17 C 0.26 6.41 5.99 -5.20 -0.03 6.38 16 18 C -0.54 -14.54 9.39 -34.44 -0.32 -14.86 16 19 H 0.06 1.79 7.81 -52.49 -0.41 1.38 16 20 C 0.07 1.80 5.46 -17.82 -0.10 1.70 16 21 N -0.89 -24.64 13.29 55.43 0.74 -23.90 16 22 Si 0.91 20.83 29.54 -169.99 -5.02 15.81 16 23 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 24 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 25 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 26 N -0.31 -6.92 12.59 31.41 0.40 -6.53 16 27 H 0.11 0.25 8.14 -51.93 -0.42 -0.17 16 28 H 0.08 0.22 8.14 -51.92 -0.42 -0.20 16 29 H 0.08 0.22 8.14 -51.92 -0.42 -0.21 16 30 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.42 3.21 8.01 -40.82 -0.33 2.88 16 35 H 0.42 6.07 8.29 -40.82 -0.34 5.73 16 36 H 0.16 2.84 5.91 -52.49 -0.31 2.53 16 37 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 38 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.07 1.21 7.07 -51.93 -0.37 0.84 16 40 H 0.06 1.38 7.04 -51.93 -0.37 1.01 16 41 H 0.05 1.43 8.14 -51.93 -0.42 1.01 16 42 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 384.65 15.07 5.80 5.80 Total: -1.00 -32.43 384.65 -7.44 -39.87 By element: Atomic # 1 Polarization: 10.81 SS G_CDS: -5.48 Total: 5.33 kcal Atomic # 6 Polarization: 7.30 SS G_CDS: -0.92 Total: 6.38 kcal Atomic # 7 Polarization: -53.71 SS G_CDS: 1.06 Total: -52.65 kcal Atomic # 8 Polarization: -16.27 SS G_CDS: -0.47 Total: -16.74 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Atomic # 16 Polarization: -1.39 SS G_CDS: -2.41 Total: -3.80 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -32.43 -7.44 -39.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116898540.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.231 kcal (2) G-P(sol) polarization free energy of solvation -32.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.873 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds