Wall clock time and date at job start Wed Apr 1 2020 01:07:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81406 * 1 3 3 C 1.81402 * 103.00023 * 2 1 4 4 C 1.52996 * 109.46877 * 180.02562 * 3 2 1 5 5 O 1.42898 * 109.47049 * 179.97438 * 4 3 2 6 6 N 1.41606 * 114.00240 * 179.97438 * 5 4 3 7 7 C 1.34769 * 120.00142 * 180.02562 * 6 5 4 8 8 O 1.21363 * 120.00278 * 359.97438 * 7 6 5 9 9 C 1.49351 * 119.99838 * 180.02562 * 7 6 5 10 10 O 1.21383 * 119.99897 * 359.97438 * 9 7 6 11 11 N 1.34777 * 119.99645 * 180.27494 * 9 7 6 12 12 C 1.39932 * 119.99544 * 179.72660 * 11 9 7 13 13 C 1.40455 * 125.98227 * 359.70504 * 12 11 9 14 14 C 1.35214 * 107.86662 * 179.89124 * 13 12 11 15 15 C 1.50705 * 126.06347 * 180.13511 * 14 13 12 16 16 N 1.34994 * 107.87788 * 0.37482 * 14 13 12 17 17 C 1.46499 * 125.97263 * 179.73744 * 16 14 13 18 18 C 1.50698 * 109.47467 * 270.00296 * 17 16 14 19 19 H 1.07998 * 119.99962 * 359.97438 * 18 17 16 20 20 C 1.37870 * 119.99884 * 179.97438 * 18 17 16 21 21 N 1.31518 * 120.00509 * 0.02562 * 20 18 17 22 22 Si 1.86809 * 119.99962 * 179.97438 * 20 18 17 23 23 H 1.48492 * 109.46995 * 59.99798 * 22 20 18 24 24 H 1.48498 * 109.47116 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.46807 * 300.00191 * 22 20 18 26 26 N 1.31275 * 125.97830 * 180.02562 * 12 11 9 27 27 H 1.08991 * 109.47345 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46781 * 299.99907 * 1 2 3 29 29 H 1.09005 * 109.47070 * 59.99674 * 1 2 3 30 30 H 1.08992 * 109.46765 * 60.00226 * 3 2 1 31 31 H 1.08998 * 109.46991 * 300.00181 * 3 2 1 32 32 H 1.08997 * 109.47602 * 60.00031 * 4 3 2 33 33 H 1.09004 * 109.47523 * 300.00199 * 4 3 2 34 34 H 0.97001 * 119.99505 * 359.97438 * 6 5 4 35 35 H 0.97001 * 120.00485 * 359.71515 * 11 9 7 36 36 H 1.08000 * 126.06682 * 0.02562 * 13 12 11 37 37 H 1.09007 * 109.46752 * 270.28430 * 15 14 13 38 38 H 1.09000 * 109.47151 * 30.27775 * 15 14 13 39 39 H 1.09000 * 109.47425 * 150.28215 * 15 14 13 40 40 H 1.09000 * 109.47034 * 30.00255 * 17 16 14 41 41 H 1.08995 * 109.46773 * 149.99944 * 17 16 14 42 42 H 0.96992 * 120.00036 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7424 1.9399 -0.0006 5 8 4.0639 3.3322 -0.0012 6 7 5.4539 3.6024 -0.0013 7 6 5.8927 4.8767 -0.0013 8 8 5.0965 5.7927 -0.0018 9 6 7.3588 5.1616 -0.0020 10 8 8.1550 4.2455 -0.0020 11 7 7.7975 6.4359 0.0036 12 6 9.1712 6.7028 0.0088 13 6 10.1980 5.7445 0.0147 14 6 11.3793 6.4023 0.0160 15 6 12.7471 5.7696 0.0190 16 7 11.1164 7.7264 0.0195 17 6 12.1116 8.8014 0.0273 18 6 12.4471 9.1651 1.4508 19 1 11.9667 8.6476 2.2679 20 6 13.3674 10.1585 1.7098 21 7 13.9521 10.7891 0.7148 22 14 13.7827 10.6098 3.4744 23 1 14.3324 9.4205 4.1732 24 1 14.7917 11.6994 3.4822 25 1 12.5538 11.0688 4.1702 26 7 9.7256 7.8927 0.0150 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8032 2.2370 0.8900 31 1 1.8032 2.2371 -0.8900 32 1 4.1610 1.4704 -0.8908 33 1 4.1617 1.4701 0.8891 34 1 6.0902 2.8703 -0.0006 35 1 7.1612 7.1681 0.0039 36 1 10.0672 4.6725 0.0157 37 1 13.0730 5.6136 1.0474 38 1 12.7051 4.8110 -0.4982 39 1 13.4525 6.4265 -0.4900 40 1 13.0136 8.4652 -0.4840 41 1 11.7075 9.6743 -0.4851 42 1 14.5997 11.4877 0.8971 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116898540.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:07:37 Heat of formation + Delta-G solvation = 2.281874 kcal Electronic energy + Delta-G solvation = -25885.783122 eV Core-core repulsion = 21803.154673 eV Total energy + Delta-G solvation = -4082.628449 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.119 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.54630 -41.56518 -39.88217 -38.69635 -36.65775 -35.37621 -34.25048 -33.09725 -32.66472 -31.70862 -29.78948 -28.85046 -27.91463 -26.60100 -24.73371 -24.39652 -22.63711 -21.43946 -21.07272 -19.87748 -18.98736 -18.76414 -17.99547 -17.60214 -17.47331 -17.08490 -16.97057 -16.95793 -16.28148 -16.03445 -15.85253 -15.28485 -15.21911 -14.78953 -14.67382 -14.63122 -14.29653 -13.82296 -13.80709 -13.72984 -13.57917 -13.37740 -13.14802 -13.12911 -13.00113 -12.68288 -12.64514 -12.24605 -12.18260 -12.13593 -11.59003 -11.45940 -11.10011 -10.96967 -10.72033 -10.33522 -9.67137 -9.24537 -8.77704 -8.32415 -6.49422 -0.13818 -0.07814 0.63353 1.06469 1.39032 1.40555 1.42362 1.50486 1.52992 1.65248 2.16849 2.19556 2.36962 2.94403 2.98470 3.38835 3.64184 3.71246 3.80072 4.11304 4.16839 4.31928 4.34287 4.40056 4.47308 4.57187 4.63151 4.73373 4.82880 4.89300 4.93048 4.95759 5.07913 5.20242 5.28126 5.54140 5.58602 5.77569 5.81477 6.00979 6.22963 6.47169 6.61649 6.71280 6.92950 7.21546 8.73894 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.029074 B = 0.001585 C = 0.001562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.819964 B =17656.556294 C =17918.259788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 S -0.274 6.274 3 C -0.079 4.079 4 C 0.043 3.957 5 O -0.147 6.147 6 N -0.551 5.551 7 C 0.538 3.462 8 O -0.523 6.523 9 C 0.539 3.461 10 O -0.498 6.498 11 N -0.594 5.594 12 C 0.266 3.734 13 C -0.290 4.290 14 C 0.091 3.909 15 C -0.083 4.083 16 N -0.337 5.337 17 C 0.273 3.727 18 C -0.555 4.555 19 H 0.051 0.949 20 C 0.025 3.975 21 N -0.917 5.917 22 Si 0.969 3.031 23 H -0.264 1.264 24 H -0.274 1.274 25 H -0.277 1.277 26 N -0.351 5.351 27 H 0.116 0.884 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.099 0.901 31 H 0.099 0.901 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.436 0.564 35 H 0.431 0.569 36 H 0.179 0.821 37 H 0.085 0.915 38 H 0.111 0.889 39 H 0.068 0.932 40 H 0.057 0.943 41 H 0.025 0.975 42 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.968 -23.079 -2.278 31.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.281 4.281 2 S -0.050 6.050 3 C -0.228 4.228 4 C -0.035 4.035 5 O -0.152 6.152 6 N -0.254 5.254 7 C 0.318 3.682 8 O -0.398 6.398 9 C 0.318 3.682 10 O -0.370 6.370 11 N -0.244 5.244 12 C 0.013 3.987 13 C -0.320 4.320 14 C -0.039 4.039 15 C -0.141 4.141 16 N -0.120 5.120 17 C 0.155 3.845 18 C -0.593 4.593 19 H 0.069 0.931 20 C -0.176 4.176 21 N -0.555 5.555 22 Si 0.793 3.207 23 H -0.189 1.189 24 H -0.199 1.199 25 H -0.203 1.203 26 N -0.182 5.182 27 H 0.134 0.866 28 H 0.107 0.893 29 H 0.107 0.893 30 H 0.117 0.883 31 H 0.118 0.882 32 H 0.107 0.893 33 H 0.106 0.894 34 H 0.281 0.719 35 H 0.269 0.731 36 H 0.197 0.803 37 H 0.103 0.897 38 H 0.129 0.871 39 H 0.087 0.913 40 H 0.074 0.926 41 H 0.043 0.957 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -20.474 -22.338 -2.340 30.391 hybrid contribution -0.622 0.842 0.711 1.265 sum -21.096 -21.495 -1.629 30.162 Atomic orbital electron populations 1.23512 0.90439 1.07901 1.06238 1.86986 1.11321 1.08438 1.98258 1.23063 0.96472 0.95912 1.07399 1.22855 0.95277 0.80899 1.04457 1.90589 1.01020 1.26272 1.97361 1.46703 0.97223 1.07650 1.73837 1.19390 0.87834 0.82382 0.78553 1.90827 1.56040 1.44583 1.48332 1.19428 0.88138 0.82566 0.78046 1.90724 1.55780 1.43969 1.46568 1.41907 1.03784 1.08923 1.69765 1.19097 0.84609 0.92610 1.02393 1.21476 0.88243 1.01215 1.21104 1.21818 0.99243 0.83810 0.99068 1.20508 0.88329 1.01122 1.04137 1.48867 1.02856 1.06482 1.53762 1.19301 0.83959 0.83430 0.97854 1.21411 1.25023 1.21070 0.91777 0.93055 1.25695 0.94923 0.94899 1.02114 1.69988 1.27972 1.24430 1.33156 0.85438 0.77990 0.78400 0.78861 1.18850 1.19858 1.20286 1.77260 0.89986 1.20240 1.30677 0.86562 0.89305 0.89275 0.88256 0.88199 0.89341 0.89414 0.71882 0.73057 0.80345 0.89657 0.87076 0.91320 0.92567 0.95731 0.91743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.54 10.76 113.37 1.22 0.68 16 2 S -0.27 -2.82 22.38 -56.49 -1.26 -4.08 16 3 C -0.08 -0.75 6.31 71.98 0.45 -0.30 16 4 C 0.04 0.46 6.23 71.98 0.45 0.91 16 5 O -0.15 -2.66 11.11 -21.42 -0.24 -2.90 16 6 N -0.55 -10.03 6.38 -174.58 -1.11 -11.15 16 7 C 0.54 13.03 8.03 87.24 0.70 13.73 16 8 O -0.52 -15.64 16.88 14.09 0.24 -15.40 16 9 C 0.54 14.40 7.85 87.24 0.69 15.09 16 10 O -0.50 -13.80 13.60 -3.35 -0.05 -13.84 16 11 N -0.59 -18.45 5.43 -308.89 -1.68 -20.13 16 12 C 0.27 10.39 8.10 133.40 1.08 11.47 16 13 C -0.29 -10.75 9.51 22.11 0.21 -10.54 16 14 C 0.09 3.58 6.92 41.38 0.29 3.86 16 15 C -0.08 -2.52 10.11 71.24 0.72 -1.80 16 16 N -0.34 -15.75 3.59 -338.45 -1.22 -16.97 16 17 C 0.27 14.11 5.99 85.63 0.51 14.63 16 18 C -0.55 -30.53 9.39 25.60 0.24 -30.29 16 19 H 0.05 2.90 7.81 -2.91 -0.02 2.88 16 20 C 0.02 1.34 5.46 84.65 0.46 1.81 16 21 N -0.92 -51.21 13.29 21.45 0.28 -50.92 16 22 Si 0.97 42.55 29.54 68.60 2.03 44.57 16 23 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 24 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 25 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 26 N -0.35 -16.17 12.59 -54.54 -0.69 -16.86 16 27 H 0.12 0.34 8.14 -2.39 -0.02 0.32 16 28 H 0.09 0.31 8.14 -2.39 -0.02 0.29 16 29 H 0.09 0.30 8.14 -2.39 -0.02 0.28 16 30 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.44 5.61 8.01 -92.71 -0.74 4.87 16 35 H 0.43 12.34 8.29 -92.71 -0.77 11.57 16 36 H 0.18 5.91 5.91 -2.91 -0.02 5.89 16 37 H 0.08 2.50 8.14 -2.38 -0.02 2.48 16 38 H 0.11 2.53 8.14 -2.39 -0.02 2.52 16 39 H 0.07 2.17 7.07 -2.39 -0.02 2.15 16 40 H 0.06 2.85 7.04 -2.39 -0.02 2.83 16 41 H 0.02 1.38 8.14 -2.39 -0.02 1.36 16 42 H 0.27 14.32 8.31 -92.71 -0.77 13.55 16 Total: -1.00 -69.78 384.65 2.90 -66.88 By element: Atomic # 1 Polarization: 21.98 SS G_CDS: -0.43 Total: 21.55 kcal Atomic # 6 Polarization: 12.22 SS G_CDS: 7.02 Total: 19.24 kcal Atomic # 7 Polarization: -111.62 SS G_CDS: -4.41 Total: -116.03 kcal Atomic # 8 Polarization: -32.10 SS G_CDS: -0.05 Total: -32.14 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.57 kcal Atomic # 16 Polarization: -2.82 SS G_CDS: -1.26 Total: -4.08 kcal Total: -69.78 2.90 -66.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116898540.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.162 kcal (2) G-P(sol) polarization free energy of solvation -69.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.881 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds