Wall clock time and date at job start Wed Apr 1 2020 00:25:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86800 * 120.00045 * 2 1 4 4 H 1.48498 * 109.47012 * 269.99891 * 3 2 1 5 5 H 1.48494 * 109.47210 * 29.99534 * 3 2 1 6 6 H 1.48500 * 109.47093 * 149.99981 * 3 2 1 7 7 C 1.38811 * 119.99797 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00053 * 180.02562 * 7 2 1 9 9 N 1.36937 * 120.00398 * 359.97438 * 7 2 1 10 10 C 1.47144 * 125.58305 * 359.97438 * 9 7 2 11 11 C 1.54605 * 107.36262 * 179.09493 * 10 9 7 12 12 C 1.53654 * 102.73195 * 339.24918 * 11 10 9 13 13 C 1.52375 * 116.39618 * 162.91767 * 12 11 10 14 14 N 1.47892 * 85.73257 * 141.28147 * 13 12 11 15 15 C 1.34778 * 134.34311 * 156.54358 * 14 13 12 16 16 O 1.21281 * 120.00053 * 359.97438 * 15 14 13 17 17 C 1.50694 * 119.99973 * 180.02562 * 15 14 13 18 18 C 1.53005 * 109.47181 * 179.97438 * 17 15 14 19 19 F 1.39901 * 109.46951 * 299.99588 * 18 17 15 20 20 F 1.39898 * 109.47000 * 59.99630 * 18 17 15 21 21 C 1.52997 * 109.47340 * 179.97438 * 18 17 15 22 22 F 1.39903 * 109.47026 * 59.99657 * 21 18 17 23 23 F 1.39901 * 109.47293 * 179.97438 * 21 18 17 24 24 F 1.39898 * 109.47163 * 299.99960 * 21 18 17 25 25 C 1.48161 * 91.20739 * 336.62471 * 14 13 12 26 26 C 1.47719 * 125.59057 * 180.02562 * 9 7 2 27 27 H 0.96999 * 119.99806 * 0.02562 * 1 2 3 28 28 H 1.08996 * 109.86591 * 59.65409 * 10 9 7 29 29 H 1.08997 * 109.98007 * 298.60467 * 10 9 7 30 30 H 1.08994 * 110.76175 * 220.93482 * 11 10 9 31 31 H 1.09004 * 110.75453 * 97.55729 * 11 10 9 32 32 H 1.09002 * 113.85294 * 255.51254 * 13 12 11 33 33 H 1.08998 * 113.85571 * 27.05613 * 13 12 11 34 34 H 1.09001 * 109.47514 * 300.00014 * 17 15 14 35 35 H 1.09003 * 109.47495 * 60.00146 * 17 15 14 36 36 H 1.08997 * 113.74300 * 269.19877 * 25 14 13 37 37 H 1.09006 * 114.04347 * 137.58154 * 25 14 13 38 38 H 1.09004 * 110.40181 * 83.64022 * 26 9 7 39 39 H 1.09001 * 110.40025 * 321.22907 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6527 0.6999 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0016 10 6 -0.1388 -2.5313 0.0028 11 6 -0.4544 -4.0446 -0.0196 12 6 0.8472 -4.6540 -0.5630 13 6 1.0383 -6.1497 -0.3436 14 7 1.6248 -6.1619 -1.7011 15 6 2.4829 -6.9743 -2.3494 16 8 2.9404 -7.9462 -1.7865 17 6 2.8747 -6.6743 -3.7732 18 6 3.8517 -7.7422 -4.2692 19 9 4.9938 -7.7407 -3.4611 20 9 3.2393 -8.9986 -4.2088 21 6 4.2491 -7.4380 -5.7150 22 9 4.8612 -6.1815 -5.7758 23 9 5.1429 -8.4142 -6.1682 24 9 3.1069 -7.4398 -6.5228 25 6 0.8943 -4.9244 -2.0618 26 6 1.9361 -3.7332 0.0028 27 1 -0.4850 0.8401 -0.0004 28 1 -0.5585 -2.0523 -0.8817 29 1 -0.5565 -2.0790 0.9023 30 1 -1.2886 -4.2555 -0.6887 31 1 -0.6622 -4.4108 0.9859 32 1 1.7495 -6.3921 0.4461 33 1 0.1045 -6.7061 -0.2619 34 1 1.9849 -6.6749 -4.4028 35 1 3.3523 -5.6956 -3.8202 36 1 -0.0835 -5.1061 -2.5079 37 1 1.4908 -4.2036 -2.6212 38 1 2.1962 -4.0316 1.0184 39 1 2.8185 -3.7506 -0.6369 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001148925316.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:25:49 Heat of formation + Delta-G solvation = -211.384864 kcal Electronic energy + Delta-G solvation = -31107.118915 eV Core-core repulsion = 25887.235303 eV Total energy + Delta-G solvation = -5219.883612 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.111 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -51.06826 -49.45293 -48.60257 -48.29892 -47.46316 -40.68831 -38.52845 -35.70421 -33.21459 -32.27009 -29.93856 -28.86226 -27.62256 -26.30920 -25.77623 -23.82208 -22.87066 -20.42562 -20.06730 -19.52023 -19.34639 -18.92495 -18.37620 -17.76626 -17.14756 -17.03236 -16.61990 -15.77402 -15.65060 -15.24423 -15.13269 -15.08352 -14.80024 -14.70958 -14.57047 -14.45417 -14.41559 -14.35843 -14.03919 -13.96607 -13.81543 -13.14637 -13.02443 -12.74137 -12.56746 -12.31217 -11.94449 -11.91534 -11.73899 -11.20144 -10.99983 -10.83458 -10.53990 -10.41573 -10.15467 -9.96800 -9.76192 -9.71888 -8.75467 -8.66998 -6.92284 -5.78866 -3.12753 1.31628 2.37716 2.46554 2.68289 2.97735 3.04800 3.15205 3.35472 3.41549 3.42918 3.85004 3.91330 4.10704 4.41207 4.56285 4.70913 4.77545 4.90575 5.04807 5.33579 5.42586 5.52680 5.61798 5.63688 5.65962 5.72768 6.03862 6.12973 6.37331 6.40952 6.56380 6.62434 7.47880 7.51639 7.56291 7.74887 7.89336 8.17208 9.14410 9.73977 10.38792 11.32640 Molecular weight = 342.11amu Principal moments of inertia in cm(-1) A = 0.015396 B = 0.002950 C = 0.002660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1818.219713 B = 9488.547520 C =10523.784185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.006 4.006 3 Si 0.911 3.089 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.230 4.230 8 H 0.078 0.922 9 N -0.605 5.605 10 C 0.178 3.822 11 C -0.131 4.131 12 C -0.105 4.105 13 C 0.126 3.874 14 N -0.636 5.636 15 C 0.542 3.458 16 O -0.530 6.530 17 C -0.193 4.193 18 C 0.286 3.714 19 F -0.152 7.152 20 F -0.154 7.154 21 C 0.427 3.573 22 F -0.155 7.155 23 F -0.160 7.160 24 F -0.158 7.158 25 C 0.118 3.882 26 C 0.161 3.839 27 H 0.253 0.747 28 H 0.048 0.952 29 H 0.044 0.956 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.084 0.916 33 H 0.088 0.912 34 H 0.137 0.863 35 H 0.140 0.860 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.026 0.974 39 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.293 -14.836 -10.507 18.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.202 4.202 3 Si 0.742 3.258 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.358 4.358 8 H 0.095 0.905 9 N -0.332 5.332 10 C 0.053 3.947 11 C -0.170 4.170 12 C -0.106 4.106 13 C 0.004 3.996 14 N -0.371 5.371 15 C 0.330 3.670 16 O -0.407 6.407 17 C -0.233 4.233 18 C 0.247 3.753 19 F -0.132 7.132 20 F -0.135 7.135 21 C 0.371 3.629 22 F -0.137 7.137 23 F -0.141 7.141 24 F -0.139 7.139 25 C -0.004 4.004 26 C 0.035 3.965 27 H 0.063 0.937 28 H 0.066 0.934 29 H 0.062 0.938 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.103 0.897 33 H 0.106 0.894 34 H 0.155 0.845 35 H 0.158 0.842 36 H 0.108 0.892 37 H 0.109 0.891 38 H 0.044 0.956 39 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 2.655 -15.270 -10.311 18.615 hybrid contribution 0.528 0.861 -0.313 1.058 sum 3.184 -14.408 -10.624 18.183 Atomic orbital electron populations 1.69953 1.04859 1.25109 1.56964 1.24783 0.95714 0.97639 1.02087 0.86130 0.78645 0.83458 0.77589 1.21583 1.21652 1.20686 1.19042 0.90448 0.82306 1.44022 0.90461 1.44562 1.01615 0.99641 1.87346 1.21215 0.84242 0.87875 1.01332 1.22680 0.94500 0.99704 1.00087 1.22463 1.00020 0.93524 0.94634 1.23056 0.97591 0.95230 0.83730 1.50186 1.43380 1.27078 1.16494 1.19209 0.79558 0.82084 0.86182 1.90801 1.54613 1.27505 1.67797 1.22843 1.01578 1.00281 0.98631 1.21276 0.83202 0.84564 0.86221 1.93200 1.50171 1.96573 1.73272 1.93182 1.82477 1.41512 1.96295 1.20969 0.76440 0.76099 0.89392 1.93300 1.83174 1.40561 1.96634 1.93291 1.68375 1.62137 1.90327 1.93279 1.49516 1.96156 1.74954 1.23240 0.96124 0.83243 0.97801 1.21050 0.92926 0.85434 0.97060 0.93711 0.93409 0.93777 0.91640 0.91594 0.89745 0.89431 0.84487 0.84228 0.89181 0.89139 0.95630 0.94204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.67 10.30 55.49 0.57 -25.10 16 2 C -0.01 -0.16 5.49 -17.43 -0.10 -0.25 16 3 Si 0.91 21.27 29.55 -169.99 -5.02 16.25 16 4 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.23 -6.06 10.28 -15.06 -0.15 -6.22 16 8 H 0.08 1.99 7.83 -52.49 -0.41 1.58 16 9 N -0.60 -14.19 3.41 -170.49 -0.58 -14.77 16 10 C 0.18 3.88 5.39 -2.85 -0.02 3.86 16 11 C -0.13 -2.03 6.36 -25.55 -0.16 -2.19 16 12 C -0.10 -1.52 0.99 -154.80 -0.15 -1.68 16 13 C 0.13 1.60 8.20 -3.60 -0.03 1.57 16 14 N -0.64 -8.24 3.63 -185.45 -0.67 -8.91 16 15 C 0.54 7.40 7.82 -10.99 -0.09 7.32 16 16 O -0.53 -9.13 15.56 5.56 0.09 -9.05 16 17 C -0.19 -1.91 4.81 -27.88 -0.13 -2.05 16 18 C 0.29 3.20 1.20 -26.73 -0.03 3.17 16 19 F -0.15 -2.01 16.11 2.25 0.04 -1.97 16 20 F -0.15 -1.94 16.10 2.25 0.04 -1.90 16 21 C 0.43 4.11 2.65 37.16 0.10 4.21 16 22 F -0.16 -1.47 16.78 2.25 0.04 -1.44 16 23 F -0.16 -1.66 17.28 2.25 0.04 -1.62 16 24 F -0.16 -1.39 16.78 2.25 0.04 -1.36 16 25 C 0.12 1.44 7.94 -3.45 -0.03 1.41 16 26 C 0.16 3.02 6.63 -3.16 -0.02 3.00 16 27 H 0.25 6.88 8.31 -40.82 -0.34 6.54 16 28 H 0.05 1.15 7.38 -51.93 -0.38 0.77 16 29 H 0.04 1.09 7.49 -51.93 -0.39 0.70 16 30 H 0.06 0.87 7.99 -51.93 -0.41 0.46 16 31 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.08 1.11 8.12 -51.93 -0.42 0.69 16 33 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 34 H 0.14 0.97 7.80 -51.93 -0.41 0.56 16 35 H 0.14 1.15 7.80 -51.93 -0.41 0.74 16 36 H 0.09 0.91 8.04 -51.93 -0.42 0.50 16 37 H 0.09 1.14 8.12 -51.93 -0.42 0.72 16 38 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.04 0.75 8.07 -51.93 -0.42 0.33 16 LS Contribution 345.96 15.07 5.21 5.21 Total: -1.00 -31.08 345.96 -5.52 -36.60 By element: Atomic # 1 Polarization: 0.39 SS G_CDS: -4.49 Total: -4.10 kcal Atomic # 6 Polarization: 12.96 SS G_CDS: -0.81 Total: 12.15 kcal Atomic # 7 Polarization: -48.10 SS G_CDS: -0.68 Total: -48.78 kcal Atomic # 8 Polarization: -9.13 SS G_CDS: 0.09 Total: -9.05 kcal Atomic # 9 Polarization: -8.48 SS G_CDS: 0.19 Total: -8.29 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.08 -5.52 -36.60 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001148925316.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -174.782 kcal (2) G-P(sol) polarization free energy of solvation -31.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -205.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -211.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds