Wall clock time and date at job start Wed Apr 1 2020 00:25:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86800 * 120.00045 * 2 1 4 4 H 1.48498 * 109.47012 * 269.99891 * 3 2 1 5 5 H 1.48494 * 109.47210 * 29.99534 * 3 2 1 6 6 H 1.48500 * 109.47093 * 149.99981 * 3 2 1 7 7 C 1.38811 * 119.99797 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00053 * 180.02562 * 7 2 1 9 9 N 1.36937 * 120.00398 * 359.97438 * 7 2 1 10 10 C 1.47144 * 125.58305 * 359.97438 * 9 7 2 11 11 C 1.54605 * 107.36262 * 179.09493 * 10 9 7 12 12 C 1.53654 * 102.73195 * 339.24918 * 11 10 9 13 13 C 1.52375 * 116.39618 * 162.91767 * 12 11 10 14 14 N 1.47892 * 85.73257 * 141.28147 * 13 12 11 15 15 C 1.34778 * 134.34311 * 156.54358 * 14 13 12 16 16 O 1.21281 * 120.00053 * 359.97438 * 15 14 13 17 17 C 1.50694 * 119.99973 * 180.02562 * 15 14 13 18 18 C 1.53005 * 109.47181 * 179.97438 * 17 15 14 19 19 F 1.39901 * 109.46951 * 299.99588 * 18 17 15 20 20 F 1.39898 * 109.47000 * 59.99630 * 18 17 15 21 21 C 1.52997 * 109.47340 * 179.97438 * 18 17 15 22 22 F 1.39903 * 109.47026 * 59.99657 * 21 18 17 23 23 F 1.39901 * 109.47293 * 179.97438 * 21 18 17 24 24 F 1.39898 * 109.47163 * 299.99960 * 21 18 17 25 25 C 1.48161 * 91.20739 * 336.62471 * 14 13 12 26 26 C 1.47719 * 125.59057 * 180.02562 * 9 7 2 27 27 H 0.96999 * 119.99806 * 0.02562 * 1 2 3 28 28 H 1.08996 * 109.86591 * 59.65409 * 10 9 7 29 29 H 1.08997 * 109.98007 * 298.60467 * 10 9 7 30 30 H 1.08994 * 110.76175 * 220.93482 * 11 10 9 31 31 H 1.09004 * 110.75453 * 97.55729 * 11 10 9 32 32 H 1.09002 * 113.85294 * 255.51254 * 13 12 11 33 33 H 1.08998 * 113.85571 * 27.05613 * 13 12 11 34 34 H 1.09001 * 109.47514 * 300.00014 * 17 15 14 35 35 H 1.09003 * 109.47495 * 60.00146 * 17 15 14 36 36 H 1.08997 * 113.74300 * 269.19877 * 25 14 13 37 37 H 1.09006 * 114.04347 * 137.58154 * 25 14 13 38 38 H 1.09004 * 110.40181 * 83.64022 * 26 9 7 39 39 H 1.09001 * 110.40025 * 321.22907 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6527 0.6999 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0016 10 6 -0.1388 -2.5313 0.0028 11 6 -0.4544 -4.0446 -0.0196 12 6 0.8472 -4.6540 -0.5630 13 6 1.0383 -6.1497 -0.3436 14 7 1.6248 -6.1619 -1.7011 15 6 2.4829 -6.9743 -2.3494 16 8 2.9404 -7.9462 -1.7865 17 6 2.8747 -6.6743 -3.7732 18 6 3.8517 -7.7422 -4.2692 19 9 4.9938 -7.7407 -3.4611 20 9 3.2393 -8.9986 -4.2088 21 6 4.2491 -7.4380 -5.7150 22 9 4.8612 -6.1815 -5.7758 23 9 5.1429 -8.4142 -6.1682 24 9 3.1069 -7.4398 -6.5228 25 6 0.8943 -4.9244 -2.0618 26 6 1.9361 -3.7332 0.0028 27 1 -0.4850 0.8401 -0.0004 28 1 -0.5585 -2.0523 -0.8817 29 1 -0.5565 -2.0790 0.9023 30 1 -1.2886 -4.2555 -0.6887 31 1 -0.6622 -4.4108 0.9859 32 1 1.7495 -6.3921 0.4461 33 1 0.1045 -6.7061 -0.2619 34 1 1.9849 -6.6749 -4.4028 35 1 3.3523 -5.6956 -3.8202 36 1 -0.0835 -5.1061 -2.5079 37 1 1.4908 -4.2036 -2.6212 38 1 2.1962 -4.0316 1.0184 39 1 2.8185 -3.7506 -0.6369 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001148925316.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:25:48 Heat of formation + Delta-G solvation = -230.070411 kcal Electronic energy + Delta-G solvation = -31107.929181 eV Core-core repulsion = 25887.235303 eV Total energy + Delta-G solvation = -5220.693878 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.111 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -51.85170 -50.32820 -49.38618 -49.07941 -48.33885 -41.80813 -39.70957 -37.23156 -34.25245 -33.88034 -31.45033 -30.17126 -28.70805 -27.42564 -27.19851 -25.34416 -23.77790 -22.09869 -21.05069 -20.30555 -20.24519 -19.85885 -19.47672 -18.79536 -18.60455 -18.03806 -17.71523 -16.89982 -16.78932 -16.56830 -16.12493 -15.88019 -15.84953 -15.77992 -15.58234 -15.51542 -15.45706 -15.16932 -15.16558 -15.04004 -14.90709 -14.22407 -14.14618 -13.88316 -13.84711 -13.62157 -13.40874 -13.19696 -12.83986 -12.76483 -12.57286 -12.41814 -12.01950 -11.92057 -11.80433 -11.63973 -11.26979 -10.94214 -10.64495 -9.79509 -8.85051 -7.81857 -5.16232 0.50544 1.38887 1.48995 1.49694 1.53693 1.58041 1.91054 2.14836 2.25705 2.32009 2.51512 3.02103 3.12586 3.19304 3.33342 3.45481 3.67368 3.74395 4.01224 4.08837 4.12851 4.22268 4.41221 4.59876 4.65753 4.69584 4.79070 4.85402 5.00721 5.11223 5.15537 5.24981 5.49955 5.76199 5.86202 6.24747 6.54873 6.87562 7.15612 7.81782 8.44876 9.27689 Molecular weight = 342.11amu Principal moments of inertia in cm(-1) A = 0.015396 B = 0.002950 C = 0.002660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1818.219713 B = 9488.547520 C =10523.784185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.059 4.059 3 Si 0.971 3.029 4 H -0.284 1.284 5 H -0.296 1.296 6 H -0.274 1.274 7 C -0.241 4.241 8 H 0.077 0.923 9 N -0.625 5.625 10 C 0.183 3.817 11 C -0.111 4.111 12 C -0.101 4.101 13 C 0.131 3.869 14 N -0.636 5.636 15 C 0.537 3.463 16 O -0.572 6.572 17 C -0.189 4.189 18 C 0.278 3.722 19 F -0.168 7.168 20 F -0.164 7.164 21 C 0.439 3.561 22 F -0.153 7.153 23 F -0.165 7.165 24 F -0.149 7.149 25 C 0.126 3.874 26 C 0.158 3.842 27 H 0.246 0.754 28 H 0.019 0.981 29 H 0.002 0.998 30 H 0.098 0.902 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.118 0.882 34 H 0.171 0.829 35 H 0.158 0.842 36 H 0.125 0.875 37 H 0.088 0.912 38 H 0.020 0.980 39 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.898 -15.690 -11.800 19.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.253 4.253 3 Si 0.800 3.200 4 H -0.211 1.211 5 H -0.223 1.223 6 H -0.199 1.199 7 C -0.370 4.370 8 H 0.095 0.905 9 N -0.351 5.351 10 C 0.058 3.942 11 C -0.150 4.150 12 C -0.102 4.102 13 C 0.009 3.991 14 N -0.370 5.370 15 C 0.327 3.673 16 O -0.453 6.453 17 C -0.228 4.228 18 C 0.240 3.760 19 F -0.149 7.149 20 F -0.145 7.145 21 C 0.383 3.617 22 F -0.134 7.134 23 F -0.146 7.146 24 F -0.130 7.130 25 C 0.005 3.995 26 C 0.033 3.967 27 H 0.056 0.944 28 H 0.037 0.963 29 H 0.020 0.980 30 H 0.116 0.884 31 H 0.096 0.904 32 H 0.094 0.906 33 H 0.136 0.864 34 H 0.189 0.811 35 H 0.176 0.824 36 H 0.142 0.858 37 H 0.106 0.894 38 H 0.038 0.962 39 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 2.269 -16.138 -11.611 20.010 hybrid contribution 0.684 1.127 0.142 1.326 sum 2.953 -15.011 -11.469 19.120 Atomic orbital electron populations 1.70159 1.05999 1.25144 1.58228 1.25510 0.96526 1.00533 1.02689 0.85191 0.77597 0.79708 0.77508 1.21133 1.22266 1.19930 1.19372 0.90821 0.83840 1.42968 0.90532 1.44838 1.02651 1.00615 1.87034 1.21010 0.83193 0.92028 0.97930 1.22515 0.95972 0.94612 1.01892 1.22284 0.97379 0.93946 0.96629 1.23095 0.98755 0.93535 0.83665 1.50204 1.43194 1.27059 1.16571 1.19725 0.78872 0.81421 0.87324 1.90786 1.56020 1.29370 1.69089 1.22946 1.02761 1.00439 0.96690 1.21587 0.83011 0.84526 0.86917 1.93163 1.51136 1.96631 1.73944 1.93157 1.82602 1.42340 1.96411 1.20642 0.76501 0.75996 0.88578 1.93311 1.83169 1.40333 1.96570 1.93284 1.68620 1.62443 1.90288 1.93300 1.49038 1.96115 1.74576 1.23344 0.97629 0.82611 0.95929 1.21153 0.94203 0.84348 0.97012 0.94436 0.96301 0.97958 0.88364 0.90438 0.90551 0.86420 0.81144 0.82394 0.85761 0.89396 0.96185 0.94532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -54.08 10.30 21.65 0.22 -53.86 16 2 C -0.06 -3.22 5.49 84.86 0.47 -2.75 16 3 Si 0.97 44.18 29.55 68.60 2.03 46.21 16 4 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 5 H -0.30 -13.64 7.11 99.48 0.71 -12.93 16 6 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 7 C -0.24 -12.86 10.28 84.03 0.86 -11.99 16 8 H 0.08 3.97 7.83 -2.91 -0.02 3.95 16 9 N -0.62 -29.53 3.41 -693.30 -2.36 -31.89 16 10 C 0.18 8.04 5.39 86.80 0.47 8.51 16 11 C -0.11 -3.19 6.36 31.36 0.20 -2.99 16 12 C -0.10 -2.68 0.99 -52.16 -0.05 -2.73 16 13 C 0.13 2.93 8.20 85.91 0.70 3.63 16 14 N -0.64 -14.53 3.63 -859.04 -3.12 -17.65 16 15 C 0.54 13.46 7.82 87.65 0.69 14.15 16 16 O -0.57 -19.09 15.56 -3.03 -0.05 -19.14 16 17 C -0.19 -3.21 4.81 29.85 0.14 -3.07 16 18 C 0.28 5.76 1.20 30.59 0.04 5.80 16 19 F -0.17 -4.34 16.11 44.97 0.72 -3.61 16 20 F -0.16 -3.93 16.10 44.97 0.72 -3.21 16 21 C 0.44 7.57 2.65 71.98 0.19 7.77 16 22 F -0.15 -2.57 16.78 44.97 0.75 -1.82 16 23 F -0.17 -3.20 17.28 44.97 0.78 -2.43 16 24 F -0.15 -2.24 16.78 44.97 0.75 -1.48 16 25 C 0.13 2.63 7.94 85.85 0.68 3.31 16 26 C 0.16 5.80 6.63 86.29 0.57 6.37 16 27 H 0.25 13.79 8.31 -92.71 -0.77 13.02 16 28 H 0.02 0.92 7.38 -2.39 -0.02 0.90 16 29 H 0.00 0.11 7.49 -2.39 -0.02 0.09 16 30 H 0.10 2.22 7.99 -2.39 -0.02 2.20 16 31 H 0.08 2.06 8.14 -2.39 -0.02 2.05 16 32 H 0.08 1.86 8.12 -2.39 -0.02 1.84 16 33 H 0.12 2.01 8.14 -2.39 -0.02 1.99 16 34 H 0.17 1.71 7.80 -2.39 -0.02 1.69 16 35 H 0.16 2.12 7.80 -2.39 -0.02 2.10 16 36 H 0.12 1.85 8.04 -2.39 -0.02 1.84 16 37 H 0.09 1.94 8.12 -2.38 -0.02 1.92 16 38 H 0.02 0.77 8.14 -2.38 -0.02 0.75 16 39 H 0.04 1.35 8.07 -2.39 -0.02 1.33 16 Total: -1.00 -69.92 345.96 6.52 -63.40 By element: Atomic # 1 Polarization: -1.62 SS G_CDS: 1.10 Total: -0.52 kcal Atomic # 6 Polarization: 21.04 SS G_CDS: 4.96 Total: 26.00 kcal Atomic # 7 Polarization: -98.15 SS G_CDS: -5.26 Total: -103.41 kcal Atomic # 8 Polarization: -19.09 SS G_CDS: -0.05 Total: -19.14 kcal Atomic # 9 Polarization: -16.28 SS G_CDS: 3.73 Total: -12.55 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Total: -69.92 6.52 -63.40 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001148925316.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -166.668 kcal (2) G-P(sol) polarization free energy of solvation -69.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -236.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -230.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds