Wall clock time and date at job start Wed Apr 1 2020 00:20:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31586 * 1 3 3 Si 1.86801 * 119.99815 * 2 1 4 4 H 1.48508 * 109.47106 * 270.00354 * 3 2 1 5 5 H 1.48501 * 109.47158 * 29.99991 * 3 2 1 6 6 H 1.48501 * 109.46886 * 150.00526 * 3 2 1 7 7 C 1.38630 * 119.99969 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99986 * 359.97438 * 7 2 1 9 9 O 1.34804 * 119.99569 * 179.97438 * 7 2 1 10 10 C 1.35820 * 116.99859 * 185.05273 * 9 7 2 11 11 C 1.39449 * 120.40157 * 354.52559 * 10 9 7 12 12 C 1.38214 * 118.44874 * 180.24716 * 11 10 9 13 13 C 1.39165 * 119.16981 * 359.44474 * 12 11 10 14 14 N 1.39121 * 119.63100 * 180.29180 * 13 12 11 15 15 C 1.46498 * 120.00061 * 0.27910 * 14 13 12 16 16 H 1.09002 * 109.52252 * 325.12106 * 15 14 13 17 17 C 1.53090 * 109.52555 * 85.31116 * 15 14 13 18 18 H 1.09003 * 109.48061 * 57.53392 * 17 15 14 19 19 O 1.42897 * 109.48207 * 297.49736 * 17 15 14 20 20 O 1.42902 * 109.41346 * 177.51121 * 17 15 14 21 21 C 1.42899 * 114.10135 * 298.84516 * 20 17 15 22 22 H 1.09003 * 109.48009 * 301.17538 * 21 20 17 23 23 C 1.53001 * 109.48193 * 181.14126 * 21 20 17 24 24 O 1.42905 * 109.47071 * 65.05534 * 23 21 20 25 25 C 1.53090 * 109.41713 * 61.15733 * 21 20 17 26 26 H 1.08998 * 109.52109 * 62.29504 * 25 21 20 27 27 O 1.42894 * 109.57547 * 182.45525 * 25 21 20 28 28 C 1.53180 * 109.16323 * 302.39153 * 25 21 20 29 29 H 1.09001 * 109.61808 * 297.07043 * 28 25 21 30 30 O 1.42891 * 109.54301 * 176.84552 * 28 25 21 31 31 N 1.32385 * 120.73536 * 0.57190 * 13 12 11 32 32 C 1.31934 * 121.69614 * 359.71889 * 31 13 12 33 33 H 0.97003 * 119.99927 * 359.97438 * 1 2 3 34 34 H 1.07999 * 120.77597 * 359.97438 * 11 10 9 35 35 H 1.07997 * 120.41354 * 179.70495 * 12 11 10 36 36 H 0.97001 * 119.99885 * 180.27198 * 14 13 12 37 37 H 0.96691 * 114.00315 * 179.97438 * 19 17 15 38 38 H 1.08995 * 109.47375 * 185.05299 * 23 21 20 39 39 H 1.09002 * 109.46762 * 305.05777 * 23 21 20 40 40 H 0.96702 * 113.99707 * 180.02562 * 24 23 21 41 41 H 0.96706 * 114.00158 * 299.71823 * 27 25 21 42 42 H 0.96700 * 114.00015 * 60.45017 * 30 28 25 43 43 H 1.07996 * 119.62414 * 179.97438 * 32 31 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3159 0.0000 0.0000 3 14 2.2498 1.6178 0.0000 4 1 2.4972 2.0465 -1.4001 5 1 1.4472 2.6527 0.7000 6 1 3.5474 1.4402 0.6999 7 6 2.0090 -1.2006 -0.0005 8 1 1.4690 -2.1359 -0.0005 9 8 3.3570 -1.2005 -0.0011 10 6 3.9737 -2.4059 -0.1082 11 6 3.2273 -3.5838 -0.0971 12 6 3.8967 -4.7884 -0.2034 13 6 5.2826 -4.7854 -0.3289 14 7 5.9655 -5.9922 -0.4427 15 6 5.2252 -7.2563 -0.4362 16 1 4.3679 -7.1729 0.2319 17 6 4.7417 -7.5734 -1.8537 18 1 5.5967 -7.6159 -2.5284 19 8 3.8408 -6.5532 -2.2893 20 8 4.0701 -8.8348 -1.8554 21 6 4.8922 -9.9341 -1.4583 22 1 5.7492 -10.0075 -2.1279 23 6 4.0799 -11.2290 -1.5251 24 8 3.7218 -11.4972 -2.8823 25 6 5.3817 -9.7118 -0.0249 26 1 4.5271 -9.6787 0.6508 27 8 6.2503 -10.7808 0.3555 28 6 6.1425 -8.3842 0.0464 29 1 7.0256 -8.4337 -0.5906 30 8 6.5398 -8.1329 1.3958 31 7 5.9590 -3.6474 -0.3357 32 6 5.3530 -2.4802 -0.2303 33 1 -0.4850 0.8401 0.0004 34 1 2.1518 -3.5557 -0.0031 35 1 3.3505 -5.7200 -0.1934 36 1 6.9319 -5.9965 -0.5265 37 1 3.4943 -6.6894 -3.1817 38 1 4.6781 -12.0535 -1.1375 39 1 3.1762 -11.1222 -0.9251 40 1 3.2037 -12.3052 -3.0000 41 1 5.8335 -11.6532 0.3332 42 1 7.1234 -8.8091 1.7664 43 1 5.9378 -1.5724 -0.2392 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169972757.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:20:04 Heat of formation + Delta-G solvation = -204.820843 kcal Electronic energy + Delta-G solvation = -30745.772019 eV Core-core repulsion = 26179.117300 eV Total energy + Delta-G solvation = -4566.654719 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.140 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.92127 -39.53172 -37.94672 -37.67817 -37.14865 -36.37722 -35.67907 -34.59696 -32.29105 -31.22799 -31.18047 -30.41033 -27.98052 -26.32193 -24.98848 -23.82076 -23.15529 -22.34764 -21.23623 -20.86543 -18.77836 -18.19219 -18.06531 -17.82783 -17.56996 -17.47258 -17.05196 -16.47004 -16.15686 -15.48655 -15.31140 -15.03298 -14.58515 -14.40239 -14.37736 -14.05189 -13.92213 -13.68469 -13.46162 -13.26496 -12.96866 -12.70760 -12.42927 -12.40498 -12.27380 -12.08645 -11.87277 -11.61570 -11.44175 -11.17559 -10.86654 -10.66683 -10.58064 -10.37112 -10.21185 -10.10316 -9.54757 -9.32641 -8.88909 -8.71961 -8.54965 -6.70560 -6.32574 -3.96834 2.11122 2.41544 2.73084 3.23483 3.29028 3.30957 3.32396 3.42037 3.47703 3.68919 4.04647 4.28500 4.31876 4.37603 4.48830 4.56021 4.58319 4.61177 4.72430 4.80898 4.87634 4.99968 5.01043 5.15794 5.20104 5.21377 5.41986 5.62673 5.82209 5.94553 6.06139 6.55171 6.60558 6.80740 6.84487 7.06064 7.08330 7.19313 7.25564 7.41863 7.60289 7.77773 8.03414 8.14055 8.90512 9.03383 9.66394 10.75691 Molecular weight = 342.14amu Principal moments of inertia in cm(-1) A = 0.020079 B = 0.002574 C = 0.002397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.165055 B =10875.981935 C =11677.527213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.061 3.939 3 Si 0.906 3.094 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.259 1.259 7 C -0.385 4.385 8 H 0.103 0.897 9 O -0.219 6.219 10 C 0.072 3.928 11 C -0.145 4.145 12 C -0.155 4.155 13 C 0.323 3.677 14 N -0.717 5.717 15 C 0.156 3.844 16 H 0.102 0.898 17 C 0.254 3.746 18 H 0.056 0.944 19 O -0.515 6.515 20 O -0.390 6.390 21 C 0.072 3.928 22 H 0.078 0.922 23 C 0.082 3.918 24 O -0.561 6.561 25 C 0.048 3.952 26 H 0.083 0.917 27 O -0.556 6.556 28 C 0.115 3.885 29 H 0.071 0.929 30 O -0.542 6.542 31 N -0.503 5.503 32 C 0.061 3.939 33 H 0.278 0.722 34 H 0.140 0.860 35 H 0.123 0.877 36 H 0.398 0.602 37 H 0.384 0.616 38 H 0.062 0.938 39 H 0.061 0.939 40 H 0.383 0.617 41 H 0.384 0.616 42 H 0.386 0.614 43 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.679 -26.552 -2.641 28.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.141 4.141 3 Si 0.731 3.269 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.183 1.183 7 C -0.461 4.461 8 H 0.120 0.880 9 O -0.124 6.124 10 C 0.018 3.982 11 C -0.172 4.172 12 C -0.179 4.179 13 C 0.091 3.909 14 N -0.356 5.356 15 C 0.047 3.953 16 H 0.119 0.881 17 C 0.155 3.845 18 H 0.073 0.927 19 O -0.321 6.321 20 O -0.311 6.311 21 C 0.013 3.987 22 H 0.096 0.904 23 C 0.003 3.997 24 O -0.367 6.367 25 C -0.013 4.013 26 H 0.101 0.899 27 O -0.363 6.363 28 C 0.054 3.946 29 H 0.089 0.911 30 O -0.347 6.347 31 N -0.219 5.219 32 C -0.097 4.097 33 H 0.088 0.912 34 H 0.158 0.842 35 H 0.141 0.859 36 H 0.233 0.767 37 H 0.234 0.766 38 H 0.080 0.920 39 H 0.079 0.921 40 H 0.230 0.770 41 H 0.233 0.767 42 H 0.235 0.765 43 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 11.604 -24.462 -2.258 27.169 hybrid contribution -0.800 -1.128 -0.414 1.443 sum 10.804 -25.589 -2.672 27.905 Atomic orbital electron populations 1.69666 1.05534 1.28289 1.48898 1.24432 0.95001 0.98749 0.95947 0.86177 0.80348 0.81473 0.78868 1.19989 1.20966 1.18294 1.20698 0.77073 0.96447 1.51907 0.88004 1.83574 1.22301 1.24747 1.81825 1.19985 0.92976 0.86297 0.98947 1.21511 1.01278 0.91248 1.03166 1.21147 0.92762 0.98356 1.05589 1.17770 0.88286 0.85243 0.99605 1.43412 1.07755 1.00385 1.84028 1.21027 0.95470 0.83723 0.95092 0.88062 1.23413 0.88813 0.77211 0.95078 0.92707 1.86876 1.65051 1.42482 1.37685 1.87953 1.39403 1.15768 1.87931 1.22644 0.94266 0.86621 0.95157 0.90440 1.22136 0.98570 0.94119 0.84827 1.86552 1.76301 1.48363 1.25453 1.23255 0.94027 0.88831 0.95157 0.89885 1.86460 1.41130 1.18085 1.90666 1.21815 0.96525 0.90185 0.86049 0.91100 1.86594 1.70446 1.51726 1.25972 1.66855 1.39678 0.97034 1.18313 1.21355 0.89542 0.94260 1.04545 0.91226 0.84222 0.85944 0.76709 0.76628 0.92003 0.92088 0.76959 0.76700 0.76548 0.83335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.05 13.96 55.48 0.77 -25.27 16 2 C 0.06 1.74 5.49 -17.51 -0.10 1.65 16 3 Si 0.91 22.12 28.62 -169.99 -4.86 17.25 16 4 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.26 -6.32 7.11 56.52 0.40 -5.92 16 7 C -0.39 -11.06 9.96 30.88 0.31 -10.75 16 8 H 0.10 2.99 5.49 -52.49 -0.29 2.70 16 9 O -0.22 -5.91 8.59 -0.09 0.00 -5.91 16 10 C 0.07 1.72 6.67 -38.97 -0.26 1.46 16 11 C -0.15 -3.27 9.25 -39.14 -0.36 -3.63 16 12 C -0.15 -3.05 7.74 -39.25 -0.30 -3.36 16 13 C 0.32 6.14 7.32 -154.91 -1.13 5.01 16 14 N -0.72 -10.67 5.17 -53.76 -0.28 -10.94 16 15 C 0.16 1.93 2.00 -67.79 -0.14 1.79 16 16 H 0.10 1.45 6.43 -51.93 -0.33 1.11 16 17 C 0.25 2.95 3.74 37.20 0.14 3.09 16 18 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 19 O -0.51 -6.92 10.58 -59.04 -0.62 -7.54 16 20 O -0.39 -4.29 10.26 -62.37 -0.64 -4.93 16 21 C 0.07 0.57 2.65 -26.68 -0.07 0.49 16 22 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 23 C 0.08 0.45 6.57 37.16 0.24 0.70 16 24 O -0.56 -4.01 13.63 -40.00 -0.55 -4.56 16 25 C 0.05 0.35 2.81 -26.59 -0.07 0.27 16 26 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 27 O -0.56 -3.03 12.92 -41.55 -0.54 -3.57 16 28 C 0.11 1.09 2.76 -26.54 -0.07 1.01 16 29 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 30 O -0.54 -5.66 13.25 -41.55 -0.55 -6.22 16 31 N -0.50 -10.31 10.39 -12.25 -0.13 -10.43 16 32 C 0.06 1.32 11.14 -17.35 -0.19 1.13 16 33 H 0.28 7.56 8.31 -40.82 -0.34 7.22 16 34 H 0.14 3.25 5.76 -52.49 -0.30 2.95 16 35 H 0.12 2.23 5.34 -52.49 -0.28 1.95 16 36 H 0.40 5.50 8.73 -40.82 -0.36 5.15 16 37 H 0.38 3.78 9.12 45.56 0.42 4.19 16 38 H 0.06 0.13 6.62 -51.93 -0.34 -0.21 16 39 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 40 H 0.38 0.88 9.12 45.56 0.42 1.29 16 41 H 0.38 0.58 7.38 45.56 0.34 0.92 16 42 H 0.39 2.65 8.72 45.56 0.40 3.05 16 43 H 0.15 2.92 8.06 -52.49 -0.42 2.49 16 LS Contribution 356.57 15.07 5.37 5.37 Total: -1.00 -36.76 356.57 -6.04 -42.80 By element: Atomic # 1 Polarization: 17.09 SS G_CDS: -2.01 Total: 15.08 kcal Atomic # 6 Polarization: 0.88 SS G_CDS: -2.01 Total: -1.13 kcal Atomic # 7 Polarization: -47.02 SS G_CDS: 0.37 Total: -46.65 kcal Atomic # 8 Polarization: -29.83 SS G_CDS: -2.90 Total: -32.72 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -4.86 Total: 17.25 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -36.76 -6.04 -42.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169972757.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -162.019 kcal (2) G-P(sol) polarization free energy of solvation -36.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -198.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -204.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds