Wall clock time and date at job start Wed Apr 1 2020 00:20:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31576 * 1 3 3 Si 1.86804 * 120.00136 * 2 1 4 4 H 1.48493 * 109.47192 * 270.00119 * 3 2 1 5 5 H 1.48500 * 109.46689 * 30.00639 * 3 2 1 6 6 H 1.48507 * 109.46873 * 149.99814 * 3 2 1 7 7 C 1.38627 * 120.00015 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99973 * 0.02562 * 7 2 1 9 9 O 1.34815 * 120.00223 * 179.97438 * 7 2 1 10 10 C 1.35816 * 116.99893 * 185.05347 * 9 7 2 11 11 C 1.39453 * 120.40653 * 354.54490 * 10 9 7 12 12 C 1.38207 * 118.44649 * 179.72262 * 11 10 9 13 13 C 1.39166 * 119.17047 * 0.50108 * 12 11 10 14 14 N 1.39131 * 119.62722 * 179.77137 * 13 12 11 15 15 C 1.46502 * 120.00257 * 359.71755 * 14 13 12 16 16 H 1.09001 * 109.56914 * 325.16551 * 15 14 13 17 17 C 1.53178 * 109.52398 * 205.00353 * 15 14 13 18 18 H 1.08996 * 109.54382 * 302.98311 * 17 15 14 19 19 O 1.42899 * 109.54108 * 63.24917 * 17 15 14 20 20 C 1.53173 * 109.03548 * 183.11586 * 17 15 14 21 21 H 1.08997 * 109.52074 * 297.01178 * 20 17 15 22 22 O 1.42903 * 109.52164 * 176.88657 * 20 17 15 23 23 C 1.53093 * 109.16528 * 56.98182 * 20 17 15 24 24 H 1.09000 * 109.47672 * 62.36975 * 23 20 17 25 25 C 1.52998 * 109.48111 * 182.40772 * 23 20 17 26 26 O 1.42900 * 109.46883 * 184.99548 * 25 23 20 27 27 O 1.42906 * 109.41262 * 302.39068 * 23 20 17 28 28 C 1.42906 * 114.09880 * 61.15698 * 27 23 20 29 29 H 1.08991 * 109.47976 * 178.85950 * 28 27 23 30 30 O 1.42904 * 109.47878 * 58.82456 * 28 27 23 31 31 N 1.32375 * 120.74169 * 359.48539 * 13 12 11 32 32 C 1.31934 * 121.69240 * 0.26222 * 31 13 12 33 33 H 0.97004 * 119.99784 * 359.97438 * 1 2 3 34 34 H 1.07998 * 120.77136 * 359.96044 * 11 10 9 35 35 H 1.08002 * 120.41549 * 180.26560 * 12 11 10 36 36 H 0.96999 * 119.99912 * 179.72370 * 14 13 12 37 37 H 0.96706 * 114.00085 * 179.56043 * 19 17 15 38 38 H 0.96702 * 114.00027 * 179.97438 * 22 20 17 39 39 H 1.08991 * 109.47197 * 304.99805 * 25 23 20 40 40 H 1.09003 * 109.47046 * 64.99831 * 25 23 20 41 41 H 0.96705 * 113.99648 * 179.97438 * 26 25 23 42 42 H 0.96697 * 114.00250 * 60.05564 * 30 28 27 43 43 H 1.07995 * 119.62286 * 179.97438 * 32 31 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2498 1.6178 0.0000 4 1 2.4973 2.0464 -1.4000 5 1 1.4473 2.6526 0.7002 6 1 3.5474 1.4401 0.7001 7 6 2.0089 -1.2005 -0.0005 8 1 1.4689 -2.1359 -0.0014 9 8 3.3570 -1.2006 -0.0011 10 6 3.9735 -2.4060 -0.1082 11 6 3.2271 -3.5839 -0.0975 12 6 3.8955 -4.7879 -0.2149 13 6 5.2825 -4.7855 -0.3284 14 7 5.9654 -5.9923 -0.4423 15 6 5.2250 -7.2565 -0.4360 16 1 4.3670 -7.1737 0.2312 17 6 6.1420 -8.3845 0.0466 18 1 7.0245 -8.4350 -0.5911 19 8 6.5390 -8.1334 1.3962 20 6 5.3813 -9.7120 -0.0252 21 1 4.5272 -9.6794 0.6511 22 8 6.2501 -10.7814 0.3540 23 6 4.8922 -9.9341 -1.4588 24 1 5.7494 -10.0074 -2.1280 25 6 4.0799 -11.2289 -1.5259 26 8 3.7221 -11.4968 -2.8832 27 8 4.0702 -8.8346 -1.8559 28 6 4.7419 -7.5733 -1.8538 29 1 4.0550 -6.7951 -2.1861 30 8 5.8631 -7.6290 -2.7380 31 7 5.9589 -3.6476 -0.3349 32 6 5.3529 -2.4804 -0.2299 33 1 -0.4850 0.8401 0.0004 34 1 2.1516 -3.5557 -0.0037 35 1 3.3486 -5.7192 -0.2147 36 1 6.9318 -5.9967 -0.5257 37 1 7.1170 -8.8131 1.7691 38 1 5.8332 -11.6536 0.3317 39 1 4.6779 -12.0535 -1.1383 40 1 3.1759 -11.1222 -0.9262 41 1 3.2046 -12.3052 -3.0013 42 1 5.6309 -7.8261 -3.6557 43 1 5.9378 -1.5726 -0.2386 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169972758.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:20:08 Heat of formation + Delta-G solvation = -211.882372 kcal Electronic energy + Delta-G solvation = -30682.051926 eV Core-core repulsion = 26115.090996 eV Total energy + Delta-G solvation = -4566.960930 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.140 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.95903 -39.65253 -37.91516 -37.66863 -37.21773 -36.31349 -35.43405 -34.65601 -32.36585 -31.39208 -31.21207 -30.41118 -28.03119 -26.47107 -25.13623 -23.78457 -23.18539 -22.39254 -21.26214 -20.68125 -18.68347 -18.50244 -18.10912 -17.82938 -17.52735 -17.42205 -16.60257 -16.50553 -16.14027 -15.72417 -15.36163 -14.90056 -14.63267 -14.44357 -14.39547 -14.18912 -14.09225 -13.75537 -13.63035 -13.17699 -13.06064 -12.77409 -12.53948 -12.40041 -12.24407 -12.16389 -11.66598 -11.56065 -11.40477 -11.23398 -10.91736 -10.82138 -10.58633 -10.28963 -10.26335 -10.12997 -9.63308 -9.43460 -9.05629 -8.84736 -8.64999 -6.80490 -6.39751 -4.04577 1.92015 2.28658 2.84990 3.24351 3.28181 3.38095 3.38876 3.43081 3.65162 3.70181 3.89051 4.16606 4.25946 4.45348 4.50467 4.54926 4.62846 4.74600 4.78410 4.88240 4.90081 4.98694 5.11301 5.17961 5.27095 5.35022 5.37226 5.57193 5.68580 5.81185 5.85119 6.33466 6.39772 6.67242 6.88756 6.96842 7.03028 7.09996 7.34583 7.35542 7.52479 7.69186 7.96712 8.06253 8.79131 8.95771 9.57236 10.68222 Molecular weight = 342.14amu Principal moments of inertia in cm(-1) A = 0.019509 B = 0.002511 C = 0.002373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1434.862114 B =11147.035879 C =11799.048938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.062 3.938 3 Si 0.906 3.094 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.258 1.258 7 C -0.388 4.388 8 H 0.103 0.897 9 O -0.217 6.217 10 C 0.069 3.931 11 C -0.138 4.138 12 C -0.193 4.193 13 C 0.321 3.679 14 N -0.711 5.711 15 C 0.163 3.837 16 H 0.107 0.893 17 C 0.113 3.887 18 H 0.078 0.922 19 O -0.548 6.548 20 C 0.051 3.949 21 H 0.078 0.922 22 O -0.557 6.557 23 C 0.061 3.939 24 H 0.085 0.915 25 C 0.081 3.919 26 O -0.561 6.561 27 O -0.378 6.378 28 C 0.240 3.760 29 H 0.115 0.885 30 O -0.566 6.566 31 N -0.499 5.499 32 C 0.072 3.928 33 H 0.279 0.721 34 H 0.143 0.857 35 H 0.117 0.883 36 H 0.403 0.597 37 H 0.384 0.616 38 H 0.382 0.618 39 H 0.060 0.940 40 H 0.058 0.942 41 H 0.382 0.618 42 H 0.385 0.615 43 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.371 -25.306 -2.436 27.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.182 1.182 7 C -0.464 4.464 8 H 0.120 0.880 9 O -0.121 6.121 10 C 0.015 3.985 11 C -0.165 4.165 12 C -0.217 4.217 13 C 0.089 3.911 14 N -0.349 5.349 15 C 0.054 3.946 16 H 0.124 0.876 17 C 0.053 3.947 18 H 0.096 0.904 19 O -0.353 6.353 20 C -0.009 4.009 21 H 0.096 0.904 22 O -0.364 6.364 23 C 0.003 3.997 24 H 0.103 0.897 25 C 0.003 3.997 26 O -0.367 6.367 27 O -0.298 6.298 28 C 0.142 3.858 29 H 0.132 0.868 30 O -0.374 6.374 31 N -0.215 5.215 32 C -0.087 4.087 33 H 0.089 0.911 34 H 0.160 0.840 35 H 0.135 0.865 36 H 0.239 0.761 37 H 0.232 0.768 38 H 0.231 0.769 39 H 0.078 0.922 40 H 0.077 0.923 41 H 0.229 0.771 42 H 0.235 0.765 43 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 10.500 -23.342 -2.093 25.680 hybrid contribution -1.051 -1.005 -0.287 1.482 sum 9.449 -24.347 -2.380 26.224 Atomic orbital electron populations 1.69657 1.05563 1.28440 1.48425 1.24437 0.95011 0.98831 0.95767 0.86170 0.80361 0.81382 0.78939 1.19919 1.20885 1.18249 1.20690 0.76982 0.96469 1.52252 0.87994 1.83585 1.22372 1.24596 1.81594 1.19981 0.92987 0.86337 0.99237 1.21508 1.01410 0.91168 1.02432 1.21157 0.92887 0.98380 1.09262 1.17895 0.88125 0.85720 0.99344 1.43462 1.08344 0.99924 1.83217 1.21159 0.95836 0.83957 0.93635 0.87576 1.21894 0.97214 0.90182 0.85433 0.90372 1.86573 1.70905 1.51386 1.26461 1.23201 0.93766 0.88938 0.94996 0.90411 1.86471 1.41179 1.18003 1.90721 1.22709 0.94856 0.86827 0.95316 0.89739 1.22150 0.98425 0.94453 0.84678 1.86552 1.76327 1.48224 1.25551 1.88236 1.38254 1.15871 1.87409 1.24040 0.85911 0.85200 0.90659 0.86763 1.86569 1.34948 1.93034 1.22895 1.66920 1.39506 0.96952 1.18150 1.21469 0.89567 0.94393 1.03247 0.91112 0.83951 0.86493 0.76122 0.76762 0.76924 0.92221 0.92327 0.77083 0.76532 0.83058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.42 13.96 55.48 0.77 -24.64 16 2 C 0.06 1.74 5.49 -17.52 -0.10 1.65 16 3 Si 0.91 21.63 28.62 -169.99 -4.86 16.77 16 4 H -0.27 -6.43 7.11 56.52 0.40 -6.02 16 5 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 6 H -0.26 -6.17 7.11 56.52 0.40 -5.77 16 7 C -0.39 -10.82 9.96 30.88 0.31 -10.51 16 8 H 0.10 2.89 5.49 -52.48 -0.29 2.60 16 9 O -0.22 -5.65 8.60 -0.11 0.00 -5.65 16 10 C 0.07 1.58 6.67 -38.97 -0.26 1.32 16 11 C -0.14 -2.94 9.25 -39.14 -0.36 -3.30 16 12 C -0.19 -3.52 8.86 -39.25 -0.35 -3.87 16 13 C 0.32 5.85 7.64 -154.90 -1.18 4.67 16 14 N -0.71 -10.56 5.00 -53.76 -0.27 -10.83 16 15 C 0.16 2.00 1.79 -67.79 -0.12 1.88 16 16 H 0.11 1.37 6.46 -51.93 -0.34 1.04 16 17 C 0.11 1.19 2.60 -26.55 -0.07 1.12 16 18 H 0.08 0.87 7.82 -51.93 -0.41 0.47 16 19 O -0.55 -6.18 13.25 -41.48 -0.55 -6.73 16 20 C 0.05 0.42 2.82 -26.59 -0.07 0.35 16 21 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 22 O -0.56 -3.66 12.91 -41.48 -0.54 -4.20 16 23 C 0.06 0.53 2.48 -26.68 -0.07 0.46 16 24 H 0.08 0.81 7.56 -51.93 -0.39 0.42 16 25 C 0.08 0.49 6.57 37.16 0.24 0.74 16 26 O -0.56 -4.20 13.63 -40.01 -0.55 -4.75 16 27 O -0.38 -4.13 10.32 -62.38 -0.64 -4.77 16 28 C 0.24 2.75 4.10 37.20 0.15 2.90 16 29 H 0.12 1.41 7.65 -51.93 -0.40 1.01 16 30 O -0.57 -6.13 11.93 -59.04 -0.70 -6.84 16 31 N -0.50 -9.92 10.39 -12.25 -0.13 -10.05 16 32 C 0.07 1.49 11.14 -17.35 -0.19 1.30 16 33 H 0.28 7.43 8.31 -40.82 -0.34 7.09 16 34 H 0.14 3.10 5.76 -52.49 -0.30 2.79 16 35 H 0.12 1.81 6.04 -52.49 -0.32 1.50 16 36 H 0.40 5.97 8.73 -40.82 -0.36 5.62 16 37 H 0.38 3.04 8.72 45.56 0.40 3.44 16 38 H 0.38 0.96 7.38 45.56 0.34 1.30 16 39 H 0.06 0.18 6.62 -51.93 -0.34 -0.17 16 40 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.38 1.00 9.12 45.56 0.42 1.41 16 42 H 0.39 2.98 9.12 45.56 0.42 3.39 16 43 H 0.15 2.85 8.06 -52.49 -0.42 2.43 16 LS Contribution 358.38 15.07 5.40 5.40 Total: -1.00 -34.94 358.38 -6.11 -41.05 By element: Atomic # 1 Polarization: 18.48 SS G_CDS: -1.98 Total: 16.51 kcal Atomic # 6 Polarization: 0.79 SS G_CDS: -2.07 Total: -1.28 kcal Atomic # 7 Polarization: -45.90 SS G_CDS: 0.38 Total: -45.52 kcal Atomic # 8 Polarization: -29.95 SS G_CDS: -2.98 Total: -32.93 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.86 Total: 16.77 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -34.94 -6.11 -41.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169972758.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -170.831 kcal (2) G-P(sol) polarization free energy of solvation -34.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -205.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -211.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds