Wall clock time and date at job start Wed Apr 1 2020 00:22:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86796 * 120.00376 * 2 1 4 4 H 1.48503 * 109.46806 * 270.00301 * 3 2 1 5 5 H 1.48497 * 109.46945 * 29.99977 * 3 2 1 6 6 H 1.48490 * 109.47250 * 150.00463 * 3 2 1 7 7 C 1.38817 * 119.99695 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99937 * 161.20515 * 7 2 1 9 9 N 1.36935 * 119.99961 * 341.20424 * 7 2 1 10 10 C 1.46388 * 119.69949 * 331.29435 * 9 7 2 11 11 C 1.53189 * 109.50938 * 115.72521 * 10 9 7 12 12 S 1.81670 * 108.94877 * 58.25721 * 11 10 9 13 13 O 1.42097 * 108.65246 * 190.08486 * 12 11 10 14 14 O 1.42100 * 108.64980 * 58.78691 * 12 11 10 15 15 C 1.81663 * 101.38738 * 304.43469 * 12 11 10 16 16 H 1.09003 * 109.64861 * 295.67633 * 15 12 11 17 17 C 1.52995 * 109.55826 * 175.40210 * 15 12 11 18 18 C 1.52999 * 109.47184 * 65.53509 * 17 15 12 19 19 N 1.46497 * 109.47246 * 179.97438 * 18 17 15 20 20 C 1.34780 * 120.00094 * 180.02562 * 19 18 17 21 21 O 1.21605 * 119.99576 * 0.02562 * 20 19 18 22 22 C 1.47421 * 120.00252 * 180.28324 * 20 19 18 23 23 C 1.41296 * 126.41293 * 359.74007 * 22 20 19 24 24 N 1.30454 * 108.01883 * 179.97438 * 23 22 20 25 25 N 1.39930 * 108.90152 * 0.02562 * 24 23 22 26 26 H 0.96997 * 125.75298 * 180.02562 * 25 24 23 27 27 C 1.34264 * 108.49091 * 359.74998 * 25 24 23 28 28 C 1.46387 * 119.69961 * 151.31271 * 9 7 2 29 29 H 0.97005 * 119.99622 * 359.97438 * 1 2 3 30 30 H 1.09001 * 109.46625 * 235.73486 * 10 9 7 31 31 H 1.08992 * 109.46733 * 355.71292 * 10 9 7 32 32 H 1.08996 * 109.55353 * 178.09453 * 11 10 9 33 33 H 1.08997 * 109.55748 * 298.30953 * 11 10 9 34 34 H 1.09002 * 109.47156 * 305.53326 * 17 15 12 35 35 H 1.09001 * 109.47117 * 185.53685 * 17 15 12 36 36 H 1.09009 * 109.46901 * 60.00085 * 18 17 15 37 37 H 1.09001 * 109.47238 * 300.00102 * 18 17 15 38 38 H 0.97000 * 119.99977 * 0.02562 * 19 18 17 39 39 H 1.07995 * 125.98606 * 0.02562 * 23 22 20 40 40 H 1.07995 * 126.29046 * 180.24820 * 27 25 24 41 41 H 1.08997 * 109.46216 * 124.26414 * 28 9 7 42 42 H 1.08994 * 109.46330 * 4.28830 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4478 2.6526 0.7000 6 1 3.5478 1.4400 0.6999 7 6 2.0102 -1.2022 -0.0005 8 1 3.0471 -1.2271 -0.3019 9 7 1.3802 -2.3566 0.3810 10 6 0.2769 -2.2974 1.3413 11 6 -1.0162 -2.7621 0.6640 12 16 -0.7810 -4.4519 0.0398 13 8 -1.8876 -4.7898 -0.7850 14 8 -0.4422 -5.2964 1.1313 15 6 0.6858 -4.2448 -1.0118 16 1 0.4501 -3.5797 -1.8426 17 6 1.1235 -5.6068 -1.5541 18 6 0.0440 -6.1540 -2.4901 19 7 0.4634 -7.4579 -3.0099 20 6 -0.3352 -8.1329 -3.8603 21 8 -1.4036 -7.6593 -4.1965 22 6 0.0841 -9.4478 -4.3785 23 6 1.2895 -10.1216 -4.0797 24 7 1.2912 -11.2529 -4.7293 25 7 0.1050 -11.3553 -5.4644 26 1 -0.1460 -12.0987 -6.0346 27 6 -0.6299 -10.2537 -5.2426 28 6 1.8165 -3.6387 -0.1747 29 1 -0.4850 0.8401 0.0004 30 1 0.4971 -2.9474 2.1882 31 1 0.1552 -1.2727 1.6921 32 1 -1.8314 -2.7505 1.3875 33 1 -1.2541 -2.0951 -0.1646 34 1 1.2697 -6.2984 -0.7244 35 1 2.0584 -5.4957 -2.1035 36 1 -0.1021 -5.4624 -3.3199 37 1 -0.8909 -6.2651 -1.9408 38 1 1.3158 -7.8354 -2.7420 39 1 2.0718 -9.7632 -3.4271 40 1 -1.6001 -10.0369 -5.6643 41 1 2.0715 -4.3189 0.6380 42 1 2.6916 -3.4823 -0.8054 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230425766.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:22:08 Heat of formation + Delta-G solvation = -8.112406 kcal Electronic energy + Delta-G solvation = -27849.531746 eV Core-core repulsion = 23766.452567 eV Total energy + Delta-G solvation = -4083.079179 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.119 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.63446 -39.19562 -37.22322 -36.36058 -35.71858 -35.23875 -33.34745 -32.12067 -31.53529 -30.64554 -29.79455 -27.65527 -24.57668 -23.80582 -22.45610 -22.31332 -21.74736 -20.64920 -20.14960 -18.87839 -18.20954 -17.17911 -16.57918 -16.31583 -15.96090 -15.55062 -15.41600 -15.08307 -14.93719 -14.81976 -14.63129 -14.02286 -13.89778 -13.59825 -13.56045 -13.23804 -13.16820 -12.44285 -12.19573 -12.08546 -11.65805 -11.52746 -11.47153 -11.42872 -11.36732 -11.16946 -11.04089 -10.89938 -10.75253 -10.31145 -10.23230 -10.14510 -9.92134 -9.74584 -9.30672 -9.22342 -8.90966 -8.70989 -7.11341 -6.08230 -3.55967 0.73866 1.24882 1.86772 2.33314 3.18572 3.24522 3.33199 3.34448 3.35100 3.38382 4.16823 4.29011 4.30605 4.50182 4.63215 4.80156 4.84306 4.95808 5.01354 5.12199 5.13927 5.27337 5.38187 5.49287 5.73216 5.76569 5.76957 5.96902 5.99512 6.07184 6.17250 6.30453 6.37171 6.44179 6.51074 6.69905 7.02361 7.09217 7.21086 7.52337 7.58628 8.14973 8.27432 8.88441 9.50200 9.97678 10.99580 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.020788 B = 0.002569 C = 0.002456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.623346 B =10896.999949 C =11397.499822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.009 3.991 3 Si 0.907 3.093 4 H -0.285 1.285 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.269 4.269 8 H 0.074 0.926 9 N -0.595 5.595 10 C 0.174 3.826 11 C -0.588 4.588 12 S 2.394 3.606 13 O -0.960 6.960 14 O -0.957 6.957 15 C -0.578 4.578 16 H 0.140 0.860 17 C -0.113 4.113 18 C 0.094 3.906 19 N -0.723 5.723 20 C 0.590 3.410 21 O -0.543 6.543 22 C -0.291 4.291 23 C 0.085 3.915 24 N -0.297 5.297 25 N -0.465 5.465 26 H 0.445 0.555 27 C 0.133 3.867 28 C 0.163 3.837 29 H 0.260 0.740 30 H 0.032 0.968 31 H 0.111 0.889 32 H 0.113 0.887 33 H 0.153 0.847 34 H 0.082 0.918 35 H 0.091 0.909 36 H 0.079 0.921 37 H 0.087 0.913 38 H 0.399 0.601 39 H 0.192 0.808 40 H 0.193 0.807 41 H 0.050 0.950 42 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.839 -16.556 -6.684 17.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.190 4.190 3 Si 0.736 3.264 4 H -0.212 1.212 5 H -0.214 1.214 6 H -0.202 1.202 7 C -0.398 4.398 8 H 0.092 0.908 9 N -0.315 5.315 10 C 0.047 3.953 11 C -0.723 4.723 12 S 2.580 3.420 13 O -0.957 6.957 14 O -0.954 6.954 15 C -0.692 4.692 16 H 0.158 0.842 17 C -0.153 4.153 18 C -0.030 4.030 19 N -0.374 5.374 20 C 0.377 3.623 21 O -0.421 6.421 22 C -0.305 4.305 23 C -0.104 4.104 24 N -0.118 5.118 25 N -0.170 5.170 26 H 0.289 0.711 27 C -0.020 4.020 28 C 0.034 3.966 29 H 0.070 0.930 30 H 0.050 0.950 31 H 0.129 0.871 32 H 0.131 0.869 33 H 0.171 0.829 34 H 0.101 0.899 35 H 0.109 0.891 36 H 0.097 0.903 37 H 0.106 0.894 38 H 0.233 0.767 39 H 0.209 0.791 40 H 0.210 0.790 41 H 0.068 0.932 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 1.124 -17.885 -6.965 19.226 hybrid contribution 0.408 1.882 -0.417 1.970 sum 1.532 -16.003 -7.382 17.690 Atomic orbital electron populations 1.69943 1.05406 1.26327 1.52256 1.25110 0.95320 0.98878 0.99739 0.86235 0.79292 0.82989 0.77869 1.21198 1.21393 1.20243 1.19220 0.93633 0.84549 1.42393 0.90848 1.44234 1.38328 1.02346 1.46615 1.20477 0.82183 1.03559 0.89108 1.30455 1.08538 1.20049 1.13285 1.08558 0.77146 0.79450 0.76805 1.93529 1.50009 1.83248 1.68883 1.93496 1.84596 1.64918 1.52425 1.30575 1.20346 1.03434 1.14823 0.84237 1.21538 0.99973 0.94090 0.99664 1.21892 0.98573 0.83911 0.98599 1.45683 1.22725 1.21104 1.47926 1.17218 0.83703 0.83164 0.78232 1.90819 1.22561 1.69361 1.59323 1.20361 0.98910 1.00002 1.11274 1.24137 0.97180 0.91347 0.97722 1.77161 1.02619 1.20761 1.11251 1.46237 1.14739 1.17841 1.38223 0.71072 1.23089 0.97376 0.86279 0.95207 1.20874 0.93771 0.87617 0.94313 0.93043 0.95027 0.87136 0.86857 0.82947 0.89942 0.89073 0.90289 0.89445 0.76728 0.79141 0.79034 0.93179 0.90238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.82 10.11 55.49 0.56 -22.25 16 2 C 0.01 0.23 4.82 -17.43 -0.08 0.15 16 3 Si 0.91 19.80 29.59 -169.99 -5.03 14.77 16 4 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 5 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 6 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 7 C -0.27 -6.48 9.46 -15.06 -0.14 -6.62 16 8 H 0.07 1.73 7.88 -52.49 -0.41 1.31 16 9 N -0.59 -12.93 2.82 -173.19 -0.49 -13.42 16 10 C 0.17 3.69 5.33 -4.00 -0.02 3.67 16 11 C -0.59 -11.46 6.36 37.26 0.24 -11.22 16 12 S 2.39 44.12 4.33 -107.50 -0.47 43.65 16 13 O -0.96 -19.76 15.84 -57.81 -0.92 -20.67 16 14 O -0.96 -19.12 18.00 -57.81 -1.04 -20.16 16 15 C -0.58 -9.43 2.65 -26.64 -0.07 -9.50 16 16 H 0.14 2.34 8.14 -51.93 -0.42 1.91 16 17 C -0.11 -1.47 4.80 -26.73 -0.13 -1.60 16 18 C 0.09 1.36 5.34 -4.04 -0.02 1.34 16 19 N -0.72 -8.65 5.55 -61.38 -0.34 -8.99 16 20 C 0.59 8.06 7.81 -12.52 -0.10 7.96 16 21 O -0.54 -9.66 16.90 5.27 0.09 -9.57 16 22 C -0.29 -3.03 6.13 -105.07 -0.64 -3.67 16 23 C 0.08 0.74 11.50 -16.98 -0.20 0.54 16 24 N -0.30 -2.76 12.63 30.86 0.39 -2.37 16 25 N -0.47 -3.18 7.29 30.85 0.22 -2.96 16 26 H 0.44 1.43 8.96 -182.73 -1.64 -0.21 16 27 C 0.13 1.09 11.82 -16.56 -0.20 0.89 16 28 C 0.16 2.88 5.56 -4.01 -0.02 2.86 16 29 H 0.26 6.47 8.31 -40.82 -0.34 6.13 16 30 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.11 2.59 5.91 -51.93 -0.31 2.28 16 32 H 0.11 1.95 8.14 -51.93 -0.42 1.52 16 33 H 0.15 3.25 7.11 -51.93 -0.37 2.88 16 34 H 0.08 0.99 8.13 -51.93 -0.42 0.57 16 35 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.08 1.20 8.14 -51.92 -0.42 0.77 16 37 H 0.09 1.52 5.67 -51.93 -0.29 1.23 16 38 H 0.40 3.28 7.43 -40.82 -0.30 2.98 16 39 H 0.19 1.03 7.50 -52.49 -0.39 0.63 16 40 H 0.19 1.14 8.06 -52.49 -0.42 0.72 16 41 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.08 1.32 7.87 -51.93 -0.41 0.91 16 LS Contribution 357.65 15.07 5.39 5.39 Total: -1.00 -34.83 357.65 -9.66 -44.49 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: -6.64 Total: 7.31 kcal Atomic # 6 Polarization: -13.81 SS G_CDS: -1.39 Total: -15.20 kcal Atomic # 7 Polarization: -50.35 SS G_CDS: 0.35 Total: -50.00 kcal Atomic # 8 Polarization: -48.54 SS G_CDS: -1.87 Total: -50.41 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -5.03 Total: 14.77 kcal Atomic # 16 Polarization: 44.12 SS G_CDS: -0.47 Total: 43.65 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -34.83 -9.66 -44.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230425766.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.374 kcal (2) G-P(sol) polarization free energy of solvation -34.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds