Wall clock time and date at job start Wed Apr 1 2020 00:22:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86802 * 120.00082 * 2 1 4 4 H 1.48501 * 109.47000 * 0.02562 * 3 2 1 5 5 H 1.48500 * 109.46569 * 120.00688 * 3 2 1 6 6 H 1.48491 * 109.47321 * 240.00717 * 3 2 1 7 7 C 1.38819 * 120.00033 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99757 * 217.15168 * 7 2 1 9 9 N 1.36939 * 119.99822 * 37.15351 * 7 2 1 10 10 C 1.46378 * 119.70394 * 20.36836 * 9 7 2 11 11 C 1.53181 * 109.51343 * 244.27855 * 10 9 7 12 12 S 1.81671 * 108.94559 * 301.74140 * 11 10 9 13 13 O 1.42098 * 108.65143 * 169.91250 * 12 11 10 14 14 O 1.42104 * 108.65295 * 301.21402 * 12 11 10 15 15 C 1.81663 * 101.38690 * 55.56406 * 12 11 10 16 16 H 1.09001 * 109.56238 * 64.27879 * 15 12 11 17 17 C 1.53004 * 109.55954 * 184.59691 * 15 12 11 18 18 C 1.53000 * 109.46871 * 294.99991 * 17 15 12 19 19 N 1.46500 * 109.46966 * 179.97438 * 18 17 15 20 20 C 1.34771 * 120.00006 * 179.97438 * 19 18 17 21 21 O 1.21601 * 120.00314 * 0.02562 * 20 19 18 22 22 C 1.47434 * 120.00316 * 180.02562 * 20 19 18 23 23 C 1.41294 * 126.41194 * 359.69094 * 22 20 19 24 24 N 1.30445 * 108.02246 * 179.87731 * 23 22 20 25 25 N 1.39925 * 108.89777 * 0.38460 * 24 23 22 26 26 H 0.97003 * 125.75956 * 179.77511 * 25 24 23 27 27 C 1.34265 * 108.49226 * 359.75122 * 25 24 23 28 28 C 1.46388 * 119.69483 * 200.09915 * 9 7 2 29 29 H 0.97003 * 120.00176 * 186.44294 * 1 2 3 30 30 H 1.09009 * 109.46332 * 4.28769 * 10 9 7 31 31 H 1.08999 * 109.46706 * 124.26607 * 10 9 7 32 32 H 1.09000 * 109.55868 * 61.57674 * 11 10 9 33 33 H 1.08995 * 109.55965 * 181.90478 * 11 10 9 34 34 H 1.09002 * 109.46983 * 54.99578 * 17 15 12 35 35 H 1.08998 * 109.47335 * 174.99673 * 17 15 12 36 36 H 1.08996 * 109.47371 * 299.99668 * 18 17 15 37 37 H 1.08997 * 109.46920 * 59.99948 * 18 17 15 38 38 H 0.97008 * 119.99958 * 0.02562 * 19 18 17 39 39 H 1.08006 * 125.98708 * 359.97438 * 23 22 20 40 40 H 1.08004 * 126.28939 * 180.02562 * 27 25 24 41 41 H 1.09002 * 109.46350 * 235.73811 * 28 9 7 42 42 H 1.09009 * 109.46652 * 355.70962 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2852 2.7465 0.0006 5 1 3.1040 1.6962 1.2125 6 1 3.1038 1.6965 -1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 2.9258 -1.2973 0.5643 9 7 1.5340 -2.2674 -0.7173 10 6 0.5857 -2.0412 -1.8092 11 6 -0.7551 -2.6978 -1.4666 12 16 -0.4884 -4.4731 -1.1879 13 8 -1.6772 -5.0316 -0.6456 14 8 0.0732 -5.0385 -2.3644 15 6 0.7842 -4.4455 0.1081 16 1 0.3758 -3.9916 1.0111 17 6 1.2380 -5.8749 0.4110 18 6 0.0712 -6.6647 1.0076 19 7 0.5055 -8.0336 1.2971 20 6 -0.3609 -8.9165 1.8319 21 8 -1.5033 -8.5772 2.0738 22 6 0.0762 -10.2940 2.1238 23 6 1.3620 -10.8325 1.8931 24 7 1.3544 -12.0770 2.2841 25 7 0.0800 -12.3921 2.7683 26 1 -0.1966 -13.2537 3.1177 27 6 -0.6956 -11.3007 2.6680 28 6 1.9825 -3.6215 -0.3883 29 1 -0.4850 -0.8347 0.0943 30 1 0.4405 -0.9698 -1.9480 31 1 0.9790 -2.4764 -2.7279 32 1 -1.1635 -2.2441 -0.5636 33 1 -1.4513 -2.5589 -2.2937 34 1 1.5677 -6.3545 -0.5107 35 1 2.0626 -5.8512 1.1233 36 1 -0.2585 -6.1852 1.9293 37 1 -0.7534 -6.6885 0.2952 38 1 1.4170 -8.3042 1.1045 39 1 2.2040 -10.3056 1.4689 40 1 -1.7326 -11.2244 2.9600 41 1 2.4053 -4.0900 -1.2770 42 1 2.7415 -3.5732 0.3927 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230425767.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:22:15 Heat of formation + Delta-G solvation = -5.715952 kcal Electronic energy + Delta-G solvation = -27878.984183 eV Core-core repulsion = 23796.008922 eV Total energy + Delta-G solvation = -4082.975261 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.119 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -41.67393 -39.25830 -37.48616 -36.54474 -35.91906 -35.42511 -33.50215 -32.17135 -31.54004 -30.72624 -30.03427 -27.64673 -24.36893 -23.85647 -22.56733 -22.35517 -21.86181 -20.84892 -20.20482 -18.95342 -18.50112 -17.58912 -16.75878 -16.38591 -16.10441 -15.60530 -15.48630 -15.17219 -14.98985 -14.90656 -14.72439 -14.25096 -13.93833 -13.71569 -13.68823 -13.34328 -13.23110 -12.63625 -12.40367 -12.31378 -11.92254 -11.65930 -11.62056 -11.55687 -11.40991 -11.26306 -11.05790 -10.82839 -10.76567 -10.26770 -10.22762 -10.04602 -9.99087 -9.78029 -9.50927 -9.28254 -8.97439 -8.54427 -7.41656 -6.42471 -3.45377 0.50797 1.21124 1.82891 2.29759 3.10337 3.13925 3.33213 3.38410 3.44693 3.61651 3.98575 4.25864 4.33200 4.46399 4.47711 4.66367 4.74864 4.84298 4.96015 4.98262 5.01257 5.15284 5.22665 5.36914 5.45516 5.55013 5.61776 5.78111 5.92210 5.93466 5.96294 6.07656 6.23939 6.33537 6.37021 6.62031 6.66514 6.77212 7.05683 7.46078 7.72185 8.21590 8.26404 8.74990 9.52014 9.83802 10.86381 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.022298 B = 0.002532 C = 0.002428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.425095 B =11053.693800 C =11529.071760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C -0.012 4.012 3 Si 1.052 2.948 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.290 1.290 7 C -0.377 4.377 8 H 0.070 0.930 9 N -0.599 5.599 10 C 0.151 3.849 11 C -0.614 4.614 12 S 2.404 3.596 13 O -0.953 6.953 14 O -0.950 6.950 15 C -0.582 4.582 16 H 0.138 0.862 17 C -0.112 4.112 18 C 0.093 3.907 19 N -0.723 5.723 20 C 0.590 3.410 21 O -0.543 6.543 22 C -0.291 4.291 23 C 0.085 3.915 24 N -0.296 5.296 25 N -0.465 5.465 26 H 0.445 0.555 27 C 0.134 3.866 28 C 0.165 3.835 29 H 0.270 0.730 30 H 0.107 0.893 31 H 0.048 0.952 32 H 0.138 0.862 33 H 0.124 0.876 34 H 0.083 0.917 35 H 0.092 0.908 36 H 0.079 0.921 37 H 0.087 0.913 38 H 0.399 0.601 39 H 0.192 0.808 40 H 0.193 0.807 41 H 0.054 0.946 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.108 -18.602 3.070 18.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.216 4.216 3 Si 0.881 3.119 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.217 1.217 7 C -0.505 4.505 8 H 0.088 0.912 9 N -0.319 5.319 10 C 0.023 3.977 11 C -0.749 4.749 12 S 2.589 3.411 13 O -0.950 6.950 14 O -0.948 6.948 15 C -0.696 4.696 16 H 0.156 0.844 17 C -0.151 4.151 18 C -0.030 4.030 19 N -0.375 5.375 20 C 0.377 3.623 21 O -0.420 6.420 22 C -0.306 4.306 23 C -0.104 4.104 24 N -0.117 5.117 25 N -0.170 5.170 26 H 0.290 0.710 27 C -0.019 4.019 28 C 0.037 3.963 29 H 0.083 0.917 30 H 0.125 0.875 31 H 0.065 0.935 32 H 0.156 0.844 33 H 0.142 0.858 34 H 0.102 0.898 35 H 0.111 0.889 36 H 0.097 0.903 37 H 0.105 0.895 38 H 0.233 0.767 39 H 0.209 0.791 40 H 0.210 0.790 41 H 0.072 0.928 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 1.409 -18.452 2.868 18.726 hybrid contribution 0.129 -0.781 0.712 1.065 sum 1.539 -19.233 3.581 19.623 Atomic orbital electron populations 1.70919 1.07179 1.30377 1.44474 1.25797 0.95870 1.01648 0.98314 0.83729 0.75366 0.76251 0.76591 1.21068 1.21733 1.21735 1.19964 1.06756 0.91416 1.32361 0.91237 1.44369 1.51316 1.01859 1.34389 1.20694 0.83978 1.03272 0.89726 1.30618 1.09429 1.23008 1.11799 1.08364 0.76722 0.78934 0.77108 1.93551 1.45216 1.76254 1.79941 1.93514 1.79425 1.76215 1.45602 1.30571 1.18440 1.02523 1.18087 0.84374 1.21519 0.99001 0.91669 1.02952 1.21884 0.97534 0.81014 1.02569 1.45668 1.14803 1.11838 1.65163 1.17221 0.84801 0.83425 0.76811 1.90819 1.18756 1.79244 1.53218 1.20347 0.95542 0.96456 1.18273 1.24134 0.97280 0.91734 0.97247 1.77161 0.99004 1.16526 1.19038 1.46241 1.08572 1.12535 1.49655 0.71040 1.23090 0.97926 0.85946 0.94936 1.20953 0.92289 0.84014 0.99078 0.91730 0.87469 0.93450 0.84436 0.85755 0.89798 0.88904 0.90262 0.89515 0.76680 0.79149 0.79017 0.92847 0.89978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.89 12.27 55.49 0.68 -23.21 16 2 C -0.01 -0.31 4.34 -17.43 -0.08 -0.38 16 3 Si 1.05 23.01 30.05 -169.99 -5.11 17.90 16 4 H -0.29 -6.42 7.11 56.52 0.40 -6.01 16 5 H -0.29 -6.14 7.11 56.52 0.40 -5.74 16 6 H -0.29 -6.18 7.11 56.52 0.40 -5.78 16 7 C -0.38 -9.31 9.34 -15.06 -0.14 -9.45 16 8 H 0.07 1.72 7.94 -52.49 -0.42 1.30 16 9 N -0.60 -13.01 2.76 -172.90 -0.48 -13.49 16 10 C 0.15 3.16 5.31 -4.01 -0.02 3.13 16 11 C -0.61 -11.41 6.32 37.25 0.24 -11.17 16 12 S 2.40 42.44 4.32 -107.50 -0.46 41.98 16 13 O -0.95 -18.79 15.83 -57.81 -0.92 -19.70 16 14 O -0.95 -18.33 18.01 -57.81 -1.04 -19.37 16 15 C -0.58 -9.19 2.67 -26.39 -0.07 -9.26 16 16 H 0.14 2.22 8.14 -51.93 -0.42 1.79 16 17 C -0.11 -1.41 4.81 -26.73 -0.13 -1.54 16 18 C 0.09 1.32 5.33 -4.04 -0.02 1.30 16 19 N -0.72 -8.41 5.55 -61.38 -0.34 -8.75 16 20 C 0.59 7.89 7.81 -12.52 -0.10 7.80 16 21 O -0.54 -9.49 16.90 5.28 0.09 -9.40 16 22 C -0.29 -2.97 6.13 -105.07 -0.64 -3.61 16 23 C 0.08 0.72 11.50 -16.98 -0.20 0.52 16 24 N -0.30 -2.70 12.63 30.86 0.39 -2.31 16 25 N -0.46 -3.10 7.29 30.85 0.22 -2.87 16 26 H 0.44 1.35 8.96 -182.73 -1.64 -0.29 16 27 C 0.13 1.06 11.82 -16.56 -0.20 0.87 16 28 C 0.17 2.90 5.59 -3.76 -0.02 2.88 16 29 H 0.27 7.03 5.32 -40.82 -0.22 6.82 16 30 H 0.11 2.49 5.89 -51.92 -0.31 2.19 16 31 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.14 2.71 5.96 -51.93 -0.31 2.40 16 33 H 0.12 2.01 8.14 -51.93 -0.42 1.58 16 34 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 35 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 37 H 0.09 1.46 5.65 -51.93 -0.29 1.17 16 38 H 0.40 3.16 7.43 -40.82 -0.30 2.86 16 39 H 0.19 0.99 7.50 -52.48 -0.39 0.60 16 40 H 0.19 1.10 8.06 -52.48 -0.42 0.68 16 41 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.08 1.38 7.82 -51.92 -0.41 0.98 16 LS Contribution 355.41 15.07 5.36 5.36 Total: -1.00 -36.05 355.41 -9.44 -45.50 By element: Atomic # 1 Polarization: 13.76 SS G_CDS: -6.46 Total: 7.29 kcal Atomic # 6 Polarization: -17.55 SS G_CDS: -1.38 Total: -18.92 kcal Atomic # 7 Polarization: -51.11 SS G_CDS: 0.48 Total: -50.63 kcal Atomic # 8 Polarization: -46.61 SS G_CDS: -1.87 Total: -48.48 kcal Atomic # 14 Polarization: 23.01 SS G_CDS: -5.11 Total: 17.90 kcal Atomic # 16 Polarization: 42.44 SS G_CDS: -0.46 Total: 41.98 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -36.05 -9.44 -45.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230425767.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.780 kcal (2) G-P(sol) polarization free energy of solvation -36.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds