Wall clock time and date at job start Wed Apr 1 2020 00:29:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 119.99918 * 2 1 4 4 H 1.48498 * 109.47535 * 274.85415 * 3 2 1 5 5 H 1.48511 * 109.46974 * 34.85158 * 3 2 1 6 6 H 1.48497 * 109.47174 * 154.84663 * 3 2 1 7 7 C 1.38812 * 119.99932 * 179.72732 * 2 1 3 8 8 H 1.07998 * 119.99954 * 341.48494 * 7 2 1 9 9 N 1.36942 * 119.99597 * 161.48853 * 7 2 1 10 10 C 1.46388 * 119.69699 * 148.55766 * 9 7 2 11 11 C 1.53175 * 109.51116 * 115.67862 * 10 9 7 12 12 S 1.81663 * 108.94812 * 58.25901 * 11 10 9 13 13 O 1.42095 * 108.65626 * 58.78434 * 12 11 10 14 14 O 1.42107 * 108.65359 * 190.08839 * 12 11 10 15 15 C 1.81675 * 101.38670 * 304.43335 * 12 11 10 16 16 H 1.08996 * 109.55844 * 295.61683 * 15 12 11 17 17 C 1.52998 * 109.55721 * 175.40101 * 15 12 11 18 18 C 1.53007 * 109.47027 * 65.00529 * 17 15 12 19 19 N 1.46502 * 109.46897 * 179.97438 * 18 17 15 20 20 C 1.34778 * 119.99415 * 179.97438 * 19 18 17 21 21 O 1.21601 * 120.00353 * 0.02562 * 20 19 18 22 22 C 1.47410 * 119.99693 * 179.97438 * 20 19 18 23 23 N 1.31614 * 125.86418 * 359.69425 * 22 20 19 24 24 C 1.33105 * 109.09815 * 179.89038 * 23 22 20 25 25 C 1.35567 * 108.34350 * 0.37226 * 24 23 22 26 26 N 1.35397 * 107.16328 * 359.77443 * 25 24 23 27 27 H 0.96996 * 126.43849 * 179.97438 * 26 25 24 28 28 C 1.46382 * 119.69961 * 328.28047 * 9 7 2 29 29 H 0.97003 * 120.00102 * 0.27424 * 1 2 3 30 30 H 1.09003 * 109.46224 * 235.69477 * 10 9 7 31 31 H 1.09000 * 109.46611 * 355.66516 * 10 9 7 32 32 H 1.09007 * 109.55696 * 178.09619 * 11 10 9 33 33 H 1.09003 * 109.56207 * 298.31261 * 11 10 9 34 34 H 1.09001 * 109.47278 * 185.00092 * 17 15 12 35 35 H 1.08996 * 109.47605 * 305.00728 * 17 15 12 36 36 H 1.09001 * 109.46734 * 299.99896 * 18 17 15 37 37 H 1.09004 * 109.47113 * 59.99628 * 18 17 15 38 38 H 0.96994 * 120.00327 * 0.02562 * 19 18 17 39 39 H 1.07996 * 125.82729 * 180.12723 * 24 23 22 40 40 H 1.08004 * 126.41547 * 179.75103 * 25 24 23 41 41 H 1.08998 * 109.46748 * 4.33290 * 28 9 7 42 42 H 1.09004 * 109.46036 * 124.31151 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3951 2.1057 -1.3950 5 1 1.5025 2.6209 0.8001 6 1 3.5952 1.4128 0.5951 7 6 2.0102 -1.2021 0.0057 8 1 1.5121 -2.1118 0.3071 9 7 3.3265 -1.2345 -0.3707 10 6 4.2303 -2.2134 0.2358 11 6 4.7282 -3.1847 -0.8390 12 16 5.5665 -2.2402 -2.1449 13 8 6.6460 -1.5213 -1.5643 14 8 5.8171 -3.1067 -3.2430 15 6 4.2710 -1.0588 -2.6210 16 1 3.4252 -1.5974 -3.0482 17 6 4.8277 -0.0771 -3.6541 18 6 5.1774 -0.8319 -4.9382 19 7 5.7099 0.1082 -5.9276 20 6 6.0883 -0.3351 -7.1429 21 8 5.9873 -1.5152 -7.4182 22 6 6.6236 0.6109 -8.1386 23 7 6.7761 1.9068 -7.9669 24 6 7.2870 2.4360 -9.0763 25 6 7.4562 1.4432 -9.9838 26 7 7.0412 0.2938 -9.4007 27 1 7.0401 -0.5887 -9.8032 28 6 3.8155 -0.2940 -1.3802 29 1 -0.4850 0.8401 -0.0040 30 1 5.0808 -1.6961 0.6800 31 1 3.6989 -2.7685 1.0088 32 1 5.4275 -3.8931 -0.3949 33 1 3.8817 -3.7247 -1.2632 34 1 4.0787 0.6840 -3.8726 35 1 5.7242 0.3989 -3.2569 36 1 5.9265 -1.5930 -4.7197 37 1 4.2809 -1.3080 -5.3355 38 1 5.7908 1.0494 -5.7079 39 1 7.5224 3.4788 -9.2289 40 1 7.8482 1.5493 -10.9846 41 1 3.0154 0.3938 -1.6537 42 1 4.6560 0.2693 -0.9748 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230460975.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:29:39 Heat of formation + Delta-G solvation = -43.722843 kcal Electronic energy + Delta-G solvation = -28048.845917 eV Core-core repulsion = 23964.222553 eV Total energy + Delta-G solvation = -4084.623363 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.119 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -43.23435 -40.59120 -39.13217 -38.03364 -37.31859 -36.82500 -34.69668 -34.17423 -33.63200 -31.73281 -30.98644 -29.28080 -26.14332 -25.69196 -24.04046 -23.22929 -22.55232 -22.44398 -21.53028 -20.08551 -19.80506 -18.94443 -18.10398 -17.93391 -17.58061 -16.98319 -16.88631 -16.76165 -16.66554 -16.18011 -15.80040 -15.45694 -15.19188 -14.92551 -14.76109 -14.72720 -14.55449 -14.35876 -14.10424 -13.91837 -13.67276 -13.25443 -13.13946 -13.07727 -12.79533 -12.67088 -12.48795 -12.22429 -12.20834 -11.68813 -11.62301 -11.48483 -11.39398 -11.36603 -10.97217 -10.71856 -10.38819 -9.58686 -9.15144 -8.19856 -5.63873 -0.93751 0.25230 1.30885 1.44284 1.46667 1.53469 1.58555 1.69545 2.28486 2.38316 2.42011 2.59865 2.84939 3.03516 3.17015 3.21285 3.38057 3.66649 3.80156 3.87065 3.98938 4.03902 4.16991 4.17633 4.33910 4.44482 4.45981 4.48509 4.60962 4.69557 4.88080 4.89136 4.91670 4.95947 5.05929 5.12410 5.58675 5.83085 6.08989 6.10643 6.23495 6.74666 6.80240 6.94250 7.50381 7.81588 8.98078 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.014330 B = 0.003175 C = 0.002783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1953.505676 B = 8817.976269 C =10059.139356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.021 4.021 3 Si 0.926 3.074 4 H -0.263 1.263 5 H -0.312 1.312 6 H -0.249 1.249 7 C -0.262 4.262 8 H 0.064 0.936 9 N -0.620 5.620 10 C 0.146 3.854 11 C -0.606 4.606 12 S 2.415 3.585 13 O -0.964 6.964 14 O -0.968 6.968 15 C -0.569 4.569 16 H 0.152 0.848 17 C -0.117 4.117 18 C 0.096 3.904 19 N -0.695 5.695 20 C 0.600 3.400 21 O -0.573 6.573 22 C 0.105 3.895 23 N -0.461 5.461 24 C -0.051 4.051 25 C 0.009 3.991 26 N -0.519 5.519 27 H 0.439 0.561 28 C 0.133 3.867 29 H 0.264 0.736 30 H 0.068 0.932 31 H 0.096 0.904 32 H 0.162 0.838 33 H 0.143 0.857 34 H 0.113 0.887 35 H 0.100 0.900 36 H 0.073 0.927 37 H 0.082 0.918 38 H 0.422 0.578 39 H 0.205 0.795 40 H 0.236 0.764 41 H 0.080 0.920 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.504 2.610 -16.593 22.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.217 4.217 3 Si 0.753 3.247 4 H -0.189 1.189 5 H -0.240 1.240 6 H -0.173 1.173 7 C -0.391 4.391 8 H 0.081 0.919 9 N -0.343 5.343 10 C 0.020 3.980 11 C -0.740 4.740 12 S 2.601 3.399 13 O -0.961 6.961 14 O -0.965 6.965 15 C -0.682 4.682 16 H 0.170 0.830 17 C -0.156 4.156 18 C -0.027 4.027 19 N -0.346 5.346 20 C 0.385 3.615 21 O -0.452 6.452 22 C -0.154 4.154 23 N -0.184 5.184 24 C -0.204 4.204 25 C -0.131 4.131 26 N -0.121 5.121 27 H 0.280 0.720 28 C 0.007 3.993 29 H 0.073 0.927 30 H 0.086 0.914 31 H 0.114 0.886 32 H 0.180 0.820 33 H 0.162 0.838 34 H 0.131 0.869 35 H 0.119 0.881 36 H 0.091 0.909 37 H 0.100 0.900 38 H 0.260 0.740 39 H 0.222 0.778 40 H 0.252 0.748 41 H 0.097 0.903 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 15.938 2.130 -16.290 22.890 hybrid contribution -0.880 0.303 -0.363 0.999 sum 15.059 2.433 -16.653 22.584 Atomic orbital electron populations 1.69930 1.07527 1.27549 1.54157 1.25966 0.95711 1.01034 0.99024 0.86201 0.79771 0.80428 0.78269 1.18946 1.24044 1.17290 1.18810 0.85192 0.93776 1.41372 0.91877 1.44434 1.07511 1.39355 1.42989 1.20856 0.94331 0.89417 0.93424 1.30529 1.14603 1.12791 1.16115 1.07999 0.77499 0.77394 0.77017 1.93510 1.50744 1.73151 1.78718 1.93544 1.84892 1.65839 1.52227 1.30307 1.17825 1.14293 1.05819 0.83042 1.21604 1.04066 0.98300 0.91609 1.21835 1.00472 0.92236 0.88202 1.45476 1.63382 1.13349 1.12437 1.16780 0.77341 0.85700 0.81648 1.90841 1.57191 1.17540 1.79603 1.22184 1.12633 0.92125 0.88479 1.70145 1.15392 1.04499 1.28386 1.23165 1.05748 1.02084 0.89405 1.23847 1.02875 0.84029 1.02397 1.43067 1.45115 1.12516 1.11423 0.72012 1.21182 0.99772 0.92547 0.85820 0.92675 0.91401 0.88562 0.81997 0.83849 0.86890 0.88147 0.90914 0.89968 0.73977 0.77774 0.74763 0.90253 0.91321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.45 13.97 21.65 0.30 -55.15 16 2 C -0.02 -1.11 5.25 84.86 0.45 -0.67 16 3 Si 0.93 41.52 24.48 68.60 1.68 43.20 16 4 H -0.26 -10.84 6.71 99.48 0.67 -10.18 16 5 H -0.31 -14.62 7.11 99.48 0.71 -13.91 16 6 H -0.25 -10.51 6.72 99.48 0.67 -9.84 16 7 C -0.26 -13.21 9.90 84.03 0.83 -12.38 16 8 H 0.06 3.46 8.06 -2.91 -0.02 3.44 16 9 N -0.62 -25.19 2.55 -702.79 -1.79 -26.98 16 10 C 0.15 4.74 6.27 86.46 0.54 5.29 16 11 C -0.61 -16.16 6.55 72.04 0.47 -15.69 16 12 S 2.41 73.39 4.32 -56.49 -0.24 73.15 16 13 O -0.96 -33.17 18.02 -127.39 -2.30 -35.46 16 14 O -0.97 -33.30 15.83 -127.39 -2.02 -35.31 16 15 C -0.57 -17.26 2.65 30.50 0.08 -17.18 16 16 H 0.15 4.40 8.14 -2.39 -0.02 4.38 16 17 C -0.12 -3.04 4.81 30.60 0.15 -2.89 16 18 C 0.10 2.71 5.33 86.38 0.46 3.17 16 19 N -0.69 -18.07 5.55 -466.37 -2.59 -20.66 16 20 C 0.60 17.12 7.81 86.66 0.68 17.80 16 21 O -0.57 -19.66 17.09 -4.03 -0.07 -19.72 16 22 C 0.10 2.43 7.95 136.28 1.08 3.52 16 23 N -0.46 -10.17 10.89 -189.53 -2.06 -12.24 16 24 C -0.05 -0.73 11.85 83.88 0.99 0.27 16 25 C 0.01 0.08 12.00 83.52 1.00 1.09 16 26 N -0.52 -8.02 6.14 -188.02 -1.16 -9.17 16 27 H 0.44 5.18 8.96 -92.71 -0.83 4.35 16 28 C 0.13 4.89 3.32 86.30 0.29 5.17 16 29 H 0.26 14.76 8.31 -92.71 -0.77 13.99 16 30 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 31 H 0.10 3.04 7.88 -2.39 -0.02 3.02 16 32 H 0.16 3.22 8.14 -2.38 -0.02 3.20 16 33 H 0.14 3.64 8.14 -2.39 -0.02 3.63 16 34 H 0.11 2.61 8.14 -2.39 -0.02 2.59 16 35 H 0.10 2.37 8.14 -2.39 -0.02 2.35 16 36 H 0.07 2.33 5.65 -2.39 -0.01 2.32 16 37 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 38 H 0.42 9.28 8.15 -92.71 -0.76 8.53 16 39 H 0.21 1.61 8.06 -2.91 -0.02 1.59 16 40 H 0.24 -0.21 8.06 -2.91 -0.02 -0.24 16 41 H 0.08 3.15 3.93 -2.39 -0.01 3.14 16 42 H 0.07 2.36 7.62 -2.39 -0.02 2.34 16 Total: -1.00 -77.99 354.75 -3.80 -81.80 By element: Atomic # 1 Polarization: 29.63 SS G_CDS: -0.58 Total: 29.05 kcal Atomic # 6 Polarization: -19.53 SS G_CDS: 7.02 Total: -12.51 kcal Atomic # 7 Polarization: -116.89 SS G_CDS: -7.30 Total: -124.19 kcal Atomic # 8 Polarization: -86.12 SS G_CDS: -4.38 Total: -90.50 kcal Atomic # 14 Polarization: 41.52 SS G_CDS: 1.68 Total: 43.20 kcal Atomic # 16 Polarization: 73.39 SS G_CDS: -0.24 Total: 73.15 kcal Total: -77.99 -3.80 -81.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230460975.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.072 kcal (2) G-P(sol) polarization free energy of solvation -77.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds