Wall clock time and date at job start Wed Apr 1 2020 00:58:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.33389 * 125.19933 * 2 1 4 4 C 1.38429 * 114.91749 * 179.97438 * 3 2 1 5 5 C 1.50695 * 122.53804 * 179.97438 * 4 3 2 6 6 N 1.46903 * 109.47221 * 105.38155 * 5 4 3 7 7 C 1.46900 * 111.00044 * 288.11479 * 6 5 4 8 8 C 1.46900 * 111.00168 * 164.15460 * 6 5 4 9 9 C 1.53001 * 109.47290 * 190.00098 * 8 6 5 10 10 N 1.46499 * 109.47209 * 179.97438 * 9 8 6 11 11 C 1.34773 * 119.99963 * 179.97438 * 10 9 8 12 12 O 1.21281 * 120.00156 * 0.02562 * 11 10 9 13 13 C 1.50697 * 119.99756 * 180.02562 * 11 10 9 14 14 S 1.81001 * 109.47023 * 180.02562 * 13 11 10 15 15 C 1.76202 * 100.00189 * 179.97438 * 14 13 11 16 16 H 1.07995 * 119.99926 * 359.97438 * 15 14 13 17 17 C 1.38793 * 120.00050 * 180.02562 * 15 14 13 18 18 N 1.31631 * 120.00090 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 119.99945 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47225 * 60.00045 * 19 17 15 21 21 H 1.48503 * 109.47074 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.47269 * 299.99683 * 19 17 15 23 23 C 1.33386 * 114.91771 * 0.24440 * 4 3 2 24 24 C 1.50702 * 125.20034 * 179.75970 * 23 4 3 25 25 S 1.75873 * 125.20238 * 179.97438 * 2 1 3 26 26 H 1.09000 * 109.47275 * 89.99444 * 1 2 3 27 27 H 1.08999 * 109.46936 * 210.00251 * 1 2 3 28 28 H 1.09004 * 109.46838 * 330.00241 * 1 2 3 29 29 H 1.07998 * 122.54470 * 359.97438 * 3 2 1 30 30 H 1.09002 * 109.46782 * 225.38041 * 5 4 3 31 31 H 1.08996 * 109.47398 * 345.38208 * 5 4 3 32 32 H 1.08995 * 109.47208 * 54.09932 * 7 6 5 33 33 H 1.09000 * 109.46877 * 174.10752 * 7 6 5 34 34 H 1.08998 * 109.46343 * 294.10083 * 7 6 5 35 35 H 1.09002 * 109.46957 * 310.00492 * 8 6 5 36 36 H 1.08995 * 109.47108 * 70.00195 * 8 6 5 37 37 H 1.09001 * 109.47056 * 300.00468 * 9 8 6 38 38 H 1.09008 * 109.47033 * 60.00278 * 9 8 6 39 39 H 0.97000 * 119.99565 * 0.02562 * 10 9 8 40 40 H 1.08999 * 109.47209 * 299.99799 * 13 11 10 41 41 H 1.08995 * 109.47467 * 60.00363 * 13 11 10 42 42 H 0.97007 * 119.99948 * 180.02562 * 18 17 15 43 43 H 1.09002 * 109.47437 * 93.39905 * 24 23 4 44 44 H 1.09000 * 109.47120 * 213.39274 * 24 23 4 45 45 H 1.08999 * 109.47205 * 333.39023 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2760 1.0900 0.0000 4 6 3.6380 0.8429 0.0006 5 6 4.6623 1.9482 0.0001 6 7 5.2642 2.0587 1.3356 7 6 4.3124 2.6323 2.2963 8 6 6.5048 2.8441 1.2906 9 6 7.2295 2.7303 2.6333 10 7 8.4670 3.5131 2.5882 11 6 9.2737 3.5609 3.6667 12 8 8.9755 2.9555 4.6745 13 6 10.5464 4.3666 3.6205 14 16 11.4038 4.2318 5.2088 15 6 12.8129 5.2382 4.8824 16 1 12.9269 5.7112 3.9182 17 6 13.7768 5.4221 5.8639 18 7 13.6381 4.8452 7.0389 19 14 15.2702 6.4895 5.5180 20 1 14.8275 7.8679 5.1871 21 1 16.1421 6.5252 6.7196 22 1 16.0279 5.9246 4.3726 23 6 3.9751 -0.4477 -0.0041 24 6 5.3860 -0.9770 -0.0098 25 16 2.5209 -1.4371 0.0006 26 1 -0.3634 0.0001 -1.0277 27 1 -0.3633 -0.8900 0.5139 28 1 -0.3633 0.8900 0.5138 29 1 1.8669 2.0895 -0.0004 30 1 5.4389 1.7236 -0.7310 31 1 4.1800 2.8904 -0.2601 32 1 3.3899 2.0518 2.2844 33 1 4.7453 2.6064 3.2962 34 1 4.0958 3.6644 2.0207 35 1 7.1476 2.4629 0.4972 36 1 6.2661 3.8893 1.0941 37 1 6.5866 3.1115 3.4267 38 1 7.4682 1.6849 2.8298 39 1 8.7053 3.9975 1.7823 40 1 11.1894 3.9851 2.8274 41 1 10.3078 5.4118 3.4237 42 1 14.3116 4.9740 7.7250 43 1 5.7079 -1.1646 1.0146 44 1 5.4232 -1.9063 -0.5782 45 1 6.0476 -0.2431 -0.4699 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267187631.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:58:46 Heat of formation + Delta-G solvation = -9.738924 kcal Electronic energy + Delta-G solvation = -23821.595972 eV Core-core repulsion = 20284.739476 eV Total energy + Delta-G solvation = -3536.856496 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 342.118 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.60109 -39.03804 -37.17997 -34.43952 -33.36725 -32.41971 -30.54294 -29.76878 -28.30227 -27.95980 -25.52282 -25.03780 -24.27844 -21.92176 -21.14017 -20.31857 -18.58902 -17.81792 -17.38484 -16.51796 -16.20544 -15.95730 -15.51483 -15.09034 -14.91417 -14.79353 -14.38792 -14.14473 -13.91824 -13.79102 -13.56315 -13.42732 -13.36102 -13.07784 -12.84217 -12.55416 -12.42212 -12.22134 -11.98428 -11.88676 -11.80269 -11.66631 -11.46560 -11.23760 -11.03716 -11.03116 -10.94867 -10.76111 -9.81705 -9.40419 -9.05510 -8.85551 -8.77064 -8.68527 -8.56160 -8.22761 -6.48950 -6.20558 -3.91252 0.70429 1.30185 1.69043 2.30317 3.00689 3.12405 3.24037 3.27306 3.30215 3.57955 3.99820 4.21411 4.43895 4.54714 4.63051 4.79756 4.82756 4.86219 4.98458 5.04077 5.09564 5.14410 5.16107 5.19688 5.22129 5.30001 5.33261 5.36390 5.43204 5.48817 5.61395 5.72392 5.77680 5.80659 5.86986 5.91434 5.97313 6.07720 6.14723 6.25915 6.56290 6.68168 6.75229 7.59993 7.71734 8.35821 8.63520 9.24490 10.86778 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.035121 B = 0.001546 C = 0.001536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.045536 B =18111.124047 C =18219.194546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.186 4.186 3 C -0.128 4.128 4 C -0.106 4.106 5 C 0.117 3.883 6 N -0.531 5.531 7 C 0.021 3.979 8 C 0.045 3.955 9 C 0.125 3.875 10 N -0.740 5.740 11 C 0.532 3.468 12 O -0.516 6.516 13 C -0.153 4.153 14 S -0.060 6.060 15 C -0.537 4.537 16 H 0.072 0.928 17 C 0.074 3.926 18 N -0.868 5.868 19 Si 0.919 3.081 20 H -0.274 1.274 21 H -0.283 1.283 22 H -0.274 1.274 23 C -0.147 4.147 24 C -0.078 4.078 25 S 0.086 5.914 26 H 0.072 0.928 27 H 0.067 0.933 28 H 0.075 0.925 29 H 0.134 0.866 30 H 0.083 0.917 31 H 0.044 0.956 32 H 0.070 0.930 33 H 0.074 0.926 34 H 0.026 0.974 35 H 0.081 0.919 36 H 0.041 0.959 37 H 0.065 0.935 38 H 0.074 0.926 39 H 0.397 0.603 40 H 0.090 0.910 41 H 0.089 0.911 42 H 0.269 0.731 43 H 0.081 0.919 44 H 0.062 0.938 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.475 -8.553 -19.781 33.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.303 4.303 3 C -0.158 4.158 4 C -0.118 4.118 5 C -0.012 4.012 6 N -0.255 5.255 7 C -0.127 4.127 8 C -0.083 4.083 9 C 0.000 4.000 10 N -0.395 5.395 11 C 0.318 3.682 12 O -0.390 6.390 13 C -0.304 4.304 14 S 0.167 5.833 15 C -0.685 4.685 16 H 0.090 0.910 17 C -0.135 4.135 18 N -0.503 5.503 19 Si 0.745 3.255 20 H -0.200 1.200 21 H -0.208 1.208 22 H -0.199 1.199 23 C -0.265 4.265 24 C -0.136 4.136 25 S 0.351 5.649 26 H 0.091 0.909 27 H 0.086 0.914 28 H 0.093 0.907 29 H 0.152 0.848 30 H 0.101 0.899 31 H 0.062 0.938 32 H 0.088 0.912 33 H 0.093 0.907 34 H 0.045 0.955 35 H 0.099 0.901 36 H 0.059 0.941 37 H 0.083 0.917 38 H 0.093 0.907 39 H 0.230 0.770 40 H 0.108 0.892 41 H 0.107 0.893 42 H 0.079 0.921 43 H 0.099 0.901 44 H 0.081 0.919 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -26.087 -11.646 -17.733 33.625 hybrid contribution 1.384 3.959 -2.031 4.660 sum -24.703 -7.687 -19.764 32.557 Atomic orbital electron populations 1.20310 0.87962 1.03078 1.02583 1.24313 0.99749 0.95634 1.10600 1.19914 0.92374 0.99063 1.04495 1.18534 0.93833 0.93863 1.05595 1.20673 0.95157 0.94847 0.90547 1.61833 1.04833 1.51422 1.07380 1.22486 0.96376 0.97142 0.96736 1.22286 0.91665 0.96172 0.98174 1.21179 0.85322 0.97025 0.96433 1.45921 1.23526 1.53252 1.16786 1.20280 0.84427 0.80983 0.82490 1.90709 1.73487 1.43745 1.31085 1.23527 0.96944 1.01833 1.08074 1.85409 1.22792 1.66068 1.09054 1.22832 1.07962 1.35101 1.02612 0.90981 1.24986 0.98161 0.95951 0.94441 1.70011 1.34935 1.41469 1.03854 0.86227 0.81134 0.80257 0.77887 1.19964 1.20804 1.19943 1.24265 0.98924 0.95643 1.07659 1.20307 0.89487 1.00609 1.03212 1.84261 0.96799 1.09681 1.74168 0.90911 0.91403 0.90653 0.84818 0.89875 0.93793 0.91155 0.90713 0.95497 0.90085 0.94107 0.91655 0.90748 0.76987 0.89210 0.89268 0.92130 0.90071 0.91936 0.90475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.42 10.38 36.01 0.37 -0.05 16 2 C -0.19 -1.42 6.51 -36.00 -0.23 -1.66 16 3 C -0.13 -1.01 9.28 -41.21 -0.38 -1.39 16 4 C -0.11 -0.89 4.55 -106.25 -0.48 -1.37 16 5 C 0.12 0.88 4.69 -4.98 -0.02 0.85 16 6 N -0.53 -4.54 4.71 -244.38 -1.15 -5.69 16 7 C 0.02 0.18 9.13 60.06 0.55 0.73 16 8 C 0.05 0.38 5.07 -3.82 -0.02 0.36 16 9 C 0.12 1.47 5.60 -4.04 -0.02 1.45 16 10 N -0.74 -9.75 5.56 -60.29 -0.33 -10.08 16 11 C 0.53 9.97 7.85 -10.99 -0.09 9.89 16 12 O -0.52 -11.90 15.86 5.56 0.09 -11.82 16 13 C -0.15 -3.08 6.16 36.00 0.22 -2.86 16 14 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 15 C -0.54 -15.33 9.50 30.94 0.29 -15.03 16 16 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 17 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 18 N -0.87 -26.23 13.22 55.49 0.73 -25.49 16 19 Si 0.92 21.40 29.55 -169.99 -5.02 16.37 16 20 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 21 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 22 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 23 C -0.15 -1.26 6.50 -36.00 -0.23 -1.50 16 24 C -0.08 -0.58 10.10 36.01 0.36 -0.22 16 25 S 0.09 0.70 23.31 -107.50 -2.51 -1.81 16 26 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 27 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.13 0.88 8.06 -52.49 -0.42 0.45 16 30 H 0.08 0.56 6.89 -51.93 -0.36 0.20 16 31 H 0.04 0.31 7.97 -51.93 -0.41 -0.11 16 32 H 0.07 0.61 6.92 -51.93 -0.36 0.25 16 33 H 0.07 0.71 6.56 -51.93 -0.34 0.37 16 34 H 0.03 0.21 8.13 -51.93 -0.42 -0.21 16 35 H 0.08 0.59 7.86 -51.93 -0.41 0.19 16 36 H 0.04 0.32 8.11 -51.93 -0.42 -0.10 16 37 H 0.07 0.85 6.59 -51.93 -0.34 0.51 16 38 H 0.07 1.00 8.14 -51.92 -0.42 0.58 16 39 H 0.40 3.94 8.47 -40.82 -0.35 3.59 16 40 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 41 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 42 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 43 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 44 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.08 0.54 6.88 -51.93 -0.36 0.18 16 LS Contribution 398.59 15.07 6.01 6.01 Total: -1.00 -34.52 398.59 -11.30 -45.81 By element: Atomic # 1 Polarization: 6.44 SS G_CDS: -7.12 Total: -0.68 kcal Atomic # 6 Polarization: -9.00 SS G_CDS: 0.22 Total: -8.78 kcal Atomic # 7 Polarization: -40.52 SS G_CDS: -0.75 Total: -41.27 kcal Atomic # 8 Polarization: -11.90 SS G_CDS: 0.09 Total: -11.82 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.37 kcal Atomic # 16 Polarization: -0.93 SS G_CDS: -4.72 Total: -5.65 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -34.52 -11.30 -45.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267187631.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.072 kcal (2) G-P(sol) polarization free energy of solvation -34.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds