Wall clock time and date at job start Wed Apr 1 2020 00:58:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.33389 * 125.19933 * 2 1 4 4 C 1.38429 * 114.91749 * 179.97438 * 3 2 1 5 5 C 1.50695 * 122.53804 * 179.97438 * 4 3 2 6 6 N 1.46903 * 109.47221 * 105.38155 * 5 4 3 7 7 C 1.46900 * 111.00044 * 288.11479 * 6 5 4 8 8 C 1.46900 * 111.00168 * 164.15460 * 6 5 4 9 9 C 1.53001 * 109.47290 * 190.00098 * 8 6 5 10 10 N 1.46499 * 109.47209 * 179.97438 * 9 8 6 11 11 C 1.34773 * 119.99963 * 179.97438 * 10 9 8 12 12 O 1.21281 * 120.00156 * 0.02562 * 11 10 9 13 13 C 1.50697 * 119.99756 * 180.02562 * 11 10 9 14 14 S 1.81001 * 109.47023 * 180.02562 * 13 11 10 15 15 C 1.76202 * 100.00189 * 179.97438 * 14 13 11 16 16 H 1.07995 * 119.99926 * 359.97438 * 15 14 13 17 17 C 1.38793 * 120.00050 * 180.02562 * 15 14 13 18 18 N 1.31631 * 120.00090 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 119.99945 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47225 * 60.00045 * 19 17 15 21 21 H 1.48503 * 109.47074 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.47269 * 299.99683 * 19 17 15 23 23 C 1.33386 * 114.91771 * 0.24440 * 4 3 2 24 24 C 1.50702 * 125.20034 * 179.75970 * 23 4 3 25 25 S 1.75873 * 125.20238 * 179.97438 * 2 1 3 26 26 H 1.09000 * 109.47275 * 89.99444 * 1 2 3 27 27 H 1.08999 * 109.46936 * 210.00251 * 1 2 3 28 28 H 1.09004 * 109.46838 * 330.00241 * 1 2 3 29 29 H 1.07998 * 122.54470 * 359.97438 * 3 2 1 30 30 H 1.09002 * 109.46782 * 225.38041 * 5 4 3 31 31 H 1.08996 * 109.47398 * 345.38208 * 5 4 3 32 32 H 1.08995 * 109.47208 * 54.09932 * 7 6 5 33 33 H 1.09000 * 109.46877 * 174.10752 * 7 6 5 34 34 H 1.08998 * 109.46343 * 294.10083 * 7 6 5 35 35 H 1.09002 * 109.46957 * 310.00492 * 8 6 5 36 36 H 1.08995 * 109.47108 * 70.00195 * 8 6 5 37 37 H 1.09001 * 109.47056 * 300.00468 * 9 8 6 38 38 H 1.09008 * 109.47033 * 60.00278 * 9 8 6 39 39 H 0.97000 * 119.99565 * 0.02562 * 10 9 8 40 40 H 1.08999 * 109.47209 * 299.99799 * 13 11 10 41 41 H 1.08995 * 109.47467 * 60.00363 * 13 11 10 42 42 H 0.97007 * 119.99948 * 180.02562 * 18 17 15 43 43 H 1.09002 * 109.47437 * 93.39905 * 24 23 4 44 44 H 1.09000 * 109.47120 * 213.39274 * 24 23 4 45 45 H 1.08999 * 109.47205 * 333.39023 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2760 1.0900 0.0000 4 6 3.6380 0.8429 0.0006 5 6 4.6623 1.9482 0.0001 6 7 5.2642 2.0587 1.3356 7 6 4.3124 2.6323 2.2963 8 6 6.5048 2.8441 1.2906 9 6 7.2295 2.7303 2.6333 10 7 8.4670 3.5131 2.5882 11 6 9.2737 3.5609 3.6667 12 8 8.9755 2.9555 4.6745 13 6 10.5464 4.3666 3.6205 14 16 11.4038 4.2318 5.2088 15 6 12.8129 5.2382 4.8824 16 1 12.9269 5.7112 3.9182 17 6 13.7768 5.4221 5.8639 18 7 13.6381 4.8452 7.0389 19 14 15.2702 6.4895 5.5180 20 1 14.8275 7.8679 5.1871 21 1 16.1421 6.5252 6.7196 22 1 16.0279 5.9246 4.3726 23 6 3.9751 -0.4477 -0.0041 24 6 5.3860 -0.9770 -0.0098 25 16 2.5209 -1.4371 0.0006 26 1 -0.3634 0.0001 -1.0277 27 1 -0.3633 -0.8900 0.5139 28 1 -0.3633 0.8900 0.5138 29 1 1.8669 2.0895 -0.0004 30 1 5.4389 1.7236 -0.7310 31 1 4.1800 2.8904 -0.2601 32 1 3.3899 2.0518 2.2844 33 1 4.7453 2.6064 3.2962 34 1 4.0958 3.6644 2.0207 35 1 7.1476 2.4629 0.4972 36 1 6.2661 3.8893 1.0941 37 1 6.5866 3.1115 3.4267 38 1 7.4682 1.6849 2.8298 39 1 8.7053 3.9975 1.7823 40 1 11.1894 3.9851 2.8274 41 1 10.3078 5.4118 3.4237 42 1 14.3116 4.9740 7.7250 43 1 5.7079 -1.1646 1.0146 44 1 5.4232 -1.9063 -0.5782 45 1 6.0476 -0.2431 -0.4699 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267187631.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:58:44 Heat of formation + Delta-G solvation = -32.799748 kcal Electronic energy + Delta-G solvation = -23822.595964 eV Core-core repulsion = 20284.739476 eV Total energy + Delta-G solvation = -3537.856488 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 342.118 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.68080 -40.00115 -37.93992 -35.61138 -34.57227 -33.96862 -31.75623 -30.48152 -29.29425 -28.66509 -27.64760 -25.81306 -24.94008 -22.66127 -21.96357 -21.56348 -19.81550 -19.17119 -17.97265 -17.84549 -17.38226 -16.93964 -16.86596 -16.39680 -16.16673 -15.93995 -15.50125 -15.00477 -14.85824 -14.77101 -14.56245 -14.32635 -14.11598 -14.03218 -13.88567 -13.54647 -13.40855 -13.15868 -12.98932 -12.90680 -12.84828 -12.62647 -12.50248 -12.42209 -12.33578 -12.08333 -12.03256 -11.73428 -11.55144 -11.11751 -10.98254 -10.26496 -10.10742 -9.39623 -9.29138 -9.17042 -8.65814 -8.33259 -6.11718 0.10945 0.71608 1.09917 1.27390 1.45037 1.47386 1.56726 1.62439 1.71746 2.24180 2.29530 3.00803 3.14928 3.35989 3.84374 3.91730 3.95973 4.04038 4.09827 4.22813 4.32432 4.34597 4.40536 4.46989 4.52582 4.53840 4.62269 4.64692 4.69949 4.73392 4.80743 4.85791 4.90638 4.96952 5.07078 5.09596 5.20447 5.31793 5.41101 5.42805 5.49320 5.68425 6.04254 6.05033 6.20744 6.52160 7.07802 7.26209 8.75683 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.035121 B = 0.001546 C = 0.001536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.045536 B =18111.124047 C =18219.194546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.188 4.188 3 C -0.139 4.139 4 C -0.111 4.111 5 C 0.121 3.879 6 N -0.541 5.541 7 C 0.025 3.975 8 C 0.057 3.943 9 C 0.128 3.872 10 N -0.711 5.711 11 C 0.533 3.467 12 O -0.568 6.568 13 C -0.128 4.128 14 S -0.154 6.154 15 C -0.548 4.548 16 H 0.084 0.916 17 C 0.013 3.987 18 N -0.912 5.912 19 Si 0.999 3.001 20 H -0.262 1.262 21 H -0.280 1.280 22 H -0.262 1.262 23 C -0.163 4.163 24 C -0.075 4.075 25 S 0.068 5.932 26 H 0.083 0.917 27 H 0.070 0.930 28 H 0.085 0.915 29 H 0.147 0.853 30 H 0.094 0.906 31 H 0.054 0.946 32 H 0.067 0.933 33 H 0.059 0.941 34 H 0.036 0.964 35 H 0.099 0.901 36 H 0.056 0.944 37 H 0.053 0.947 38 H 0.057 0.943 39 H 0.418 0.582 40 H 0.112 0.888 41 H 0.111 0.889 42 H 0.271 0.729 43 H 0.069 0.931 44 H 0.069 0.931 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.707 -7.067 -22.551 34.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.305 4.305 3 C -0.169 4.169 4 C -0.123 4.123 5 C -0.008 4.008 6 N -0.265 5.265 7 C -0.124 4.124 8 C -0.071 4.071 9 C 0.003 3.997 10 N -0.365 5.365 11 C 0.319 3.681 12 O -0.446 6.446 13 C -0.280 4.280 14 S 0.073 5.927 15 C -0.695 4.695 16 H 0.102 0.898 17 C -0.191 4.191 18 N -0.548 5.548 19 Si 0.820 3.180 20 H -0.186 1.186 21 H -0.205 1.205 22 H -0.186 1.186 23 C -0.281 4.281 24 C -0.133 4.133 25 S 0.332 5.668 26 H 0.101 0.899 27 H 0.089 0.911 28 H 0.104 0.896 29 H 0.165 0.835 30 H 0.112 0.888 31 H 0.072 0.928 32 H 0.086 0.914 33 H 0.078 0.922 34 H 0.055 0.945 35 H 0.117 0.883 36 H 0.074 0.926 37 H 0.071 0.929 38 H 0.075 0.925 39 H 0.255 0.745 40 H 0.130 0.870 41 H 0.129 0.871 42 H 0.080 0.920 43 H 0.088 0.912 44 H 0.087 0.913 45 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -26.348 -10.150 -20.574 34.936 hybrid contribution 1.308 3.445 -1.243 3.889 sum -25.040 -6.705 -21.817 33.881 Atomic orbital electron populations 1.20399 0.86389 1.03748 1.03448 1.24659 1.00869 0.95103 1.09880 1.20112 0.92317 0.99754 1.04685 1.18733 0.94370 0.94003 1.05175 1.20691 0.95277 0.94981 0.89886 1.61763 1.04951 1.51708 1.08120 1.22412 0.96147 0.97674 0.96124 1.22170 0.91529 0.97250 0.96142 1.21221 0.84436 0.95536 0.98474 1.45605 1.22814 1.52235 1.15881 1.20073 0.84524 0.80445 0.83040 1.90700 1.74569 1.45983 1.33340 1.23363 0.97168 1.03677 1.03743 1.85615 1.24658 1.66826 1.15619 1.23186 1.08076 1.35042 1.03240 0.89782 1.26133 1.01697 0.97301 0.94003 1.70185 1.36279 1.43224 1.05107 0.84999 0.76552 0.78382 0.78026 1.18639 1.20471 1.18612 1.24455 0.99287 0.95971 1.08418 1.20288 0.89175 1.01174 1.02674 1.84288 0.97392 1.10590 1.74498 0.89879 0.91100 0.89595 0.83518 0.88821 0.92756 0.91446 0.92174 0.94511 0.88263 0.92569 0.92904 0.92473 0.74518 0.87010 0.87064 0.92018 0.91188 0.91260 0.89771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.73 10.38 71.24 0.74 0.01 16 2 C -0.19 -2.67 6.51 24.59 0.16 -2.51 16 3 C -0.14 -1.97 9.28 21.22 0.20 -1.78 16 4 C -0.11 -1.69 4.55 -20.92 -0.10 -1.79 16 5 C 0.12 1.52 4.69 85.56 0.40 1.92 16 6 N -0.54 -8.25 4.71 -927.07 -4.37 -12.62 16 7 C 0.02 0.39 9.13 127.69 1.17 1.56 16 8 C 0.06 0.80 5.07 86.30 0.44 1.24 16 9 C 0.13 2.84 5.60 86.38 0.48 3.33 16 10 N -0.71 -17.22 5.56 -463.06 -2.57 -19.80 16 11 C 0.53 19.59 7.85 87.66 0.69 20.28 16 12 O -0.57 -26.74 15.86 -3.03 -0.05 -26.79 16 13 C -0.13 -5.01 6.16 71.23 0.44 -4.57 16 14 S -0.15 -8.59 20.57 -56.49 -1.16 -9.76 16 15 C -0.55 -31.21 9.50 67.95 0.65 -30.56 16 16 H 0.08 4.41 7.80 -2.91 -0.02 4.38 16 17 C 0.01 0.76 5.49 84.86 0.47 1.23 16 18 N -0.91 -56.16 13.22 21.65 0.29 -55.87 16 19 Si 1.00 43.39 29.55 68.60 2.03 45.42 16 20 H -0.26 -10.76 7.11 99.48 0.71 -10.06 16 21 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 22 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 23 C -0.16 -2.69 6.50 24.59 0.16 -2.53 16 24 C -0.07 -1.07 10.10 71.24 0.72 -0.35 16 25 S 0.07 1.08 23.31 -56.49 -1.32 -0.24 16 26 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 27 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 28 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.15 1.62 8.06 -2.91 -0.02 1.60 16 30 H 0.09 0.98 6.89 -2.39 -0.02 0.97 16 31 H 0.05 0.59 7.97 -2.39 -0.02 0.57 16 32 H 0.07 1.11 6.92 -2.39 -0.02 1.09 16 33 H 0.06 1.13 6.56 -2.39 -0.02 1.11 16 34 H 0.04 0.51 8.13 -2.39 -0.02 0.49 16 35 H 0.10 1.08 7.86 -2.39 -0.02 1.06 16 36 H 0.06 0.66 8.11 -2.39 -0.02 0.64 16 37 H 0.05 1.35 6.59 -2.39 -0.02 1.33 16 38 H 0.06 1.51 8.14 -2.38 -0.02 1.49 16 39 H 0.42 6.79 8.47 -92.71 -0.79 6.01 16 40 H 0.11 3.88 8.14 -2.40 -0.02 3.86 16 41 H 0.11 3.86 8.14 -2.40 -0.02 3.84 16 42 H 0.27 15.52 8.31 -92.70 -0.77 14.75 16 43 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 44 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 45 H 0.08 1.05 6.88 -2.39 -0.02 1.03 16 Total: -1.00 -77.19 398.59 -0.34 -77.53 By element: Atomic # 1 Polarization: 16.43 SS G_CDS: 0.21 Total: 16.64 kcal Atomic # 6 Polarization: -21.12 SS G_CDS: 6.61 Total: -14.52 kcal Atomic # 7 Polarization: -81.63 SS G_CDS: -6.65 Total: -88.28 kcal Atomic # 8 Polarization: -26.74 SS G_CDS: -0.05 Total: -26.79 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.42 kcal Atomic # 16 Polarization: -7.52 SS G_CDS: -2.48 Total: -10.00 kcal Total: -77.19 -0.34 -77.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267187631.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.726 kcal (2) G-P(sol) polarization free energy of solvation -77.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds