Wall clock time and date at job start Wed Apr 1 2020 00:24:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86805 * 120.00200 * 2 1 4 4 H 1.48501 * 109.46866 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.46941 * 299.99897 * 3 2 1 6 6 H 1.48500 * 109.46791 * 60.00246 * 3 2 1 7 7 C 1.38817 * 120.00022 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00377 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99504 * 0.02562 * 7 2 1 10 10 C 1.46044 * 125.23958 * 359.32392 * 9 7 2 11 11 C 1.53931 * 107.07602 * 198.01461 * 10 9 7 12 12 H 1.09005 * 113.60364 * 209.70630 * 11 10 9 13 13 C 1.53967 * 109.25084 * 82.51420 * 11 10 9 14 14 N 1.46776 * 106.62681 * 221.80967 * 13 11 10 15 15 C 1.34774 * 125.33922 * 198.49320 * 14 13 11 16 16 O 1.21278 * 120.00190 * 0.02562 * 15 14 13 17 17 C 1.50704 * 119.99856 * 180.02562 * 15 14 13 18 18 C 1.53009 * 109.46688 * 180.02562 * 17 15 14 19 19 F 1.39901 * 109.47120 * 299.99585 * 18 17 15 20 20 F 1.39900 * 109.47234 * 60.00115 * 18 17 15 21 21 C 1.52999 * 109.46625 * 180.02562 * 18 17 15 22 22 F 1.39900 * 109.47322 * 60.00045 * 21 18 17 23 23 F 1.39902 * 109.47005 * 179.97438 * 21 18 17 24 24 F 1.39900 * 109.47387 * 299.99952 * 21 18 17 25 25 C 1.46666 * 109.32261 * 18.51868 * 14 13 11 26 26 C 1.53725 * 107.94547 * 359.45198 * 25 14 13 27 27 H 1.08999 * 112.56169 * 220.28763 * 26 25 14 28 28 C 1.46644 * 125.32504 * 179.97438 * 9 7 2 29 29 H 0.97009 * 119.99826 * 359.97438 * 1 2 3 30 30 H 1.09000 * 109.10347 * 78.99071 * 10 9 7 31 31 H 1.09002 * 110.55965 * 317.85317 * 10 9 7 32 32 H 1.09001 * 110.02494 * 341.10284 * 13 11 10 33 33 H 1.09002 * 110.03201 * 102.51875 * 13 11 10 34 34 H 1.08997 * 109.47229 * 300.00063 * 17 15 14 35 35 H 1.08999 * 109.47185 * 60.00527 * 17 15 14 36 36 H 1.09005 * 109.77152 * 239.83467 * 25 14 13 37 37 H 1.09002 * 109.77945 * 119.07579 * 25 14 13 38 38 H 1.08999 * 109.75787 * 59.52648 * 28 9 7 39 39 H 1.08995 * 109.76195 * 298.79774 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3964 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0001 9 7 1.3255 -2.3880 0.0005 10 6 -0.1288 -2.5213 0.0141 11 6 -0.4468 -3.9586 0.4641 12 1 -1.3764 -4.3499 0.0505 13 6 -0.3936 -4.0328 2.0011 14 7 0.2905 -5.2870 2.3376 15 6 0.2400 -5.9059 3.5337 16 8 -0.4113 -5.4265 4.4376 17 6 0.9927 -7.1938 3.7481 18 6 0.7683 -7.6832 5.1804 19 9 1.2306 -6.7175 6.0809 20 9 -0.5976 -7.9009 5.3903 21 6 1.5330 -8.9904 5.3982 22 9 2.8989 -8.7722 5.1885 23 9 1.3284 -9.4376 6.7079 24 9 1.0714 -9.9564 4.4976 25 6 1.0384 -5.7607 1.1682 26 6 0.8078 -4.7624 0.0222 27 1 0.6749 -5.2549 -0.9410 28 6 1.9376 -3.7206 0.0005 29 1 -0.4850 0.8401 0.0004 30 1 -0.5119 -2.3523 -0.9923 31 1 -0.5723 -1.8066 0.7074 32 1 0.1655 -3.1848 2.3966 33 1 -1.4041 -4.0375 2.4099 34 1 0.6323 -7.9464 3.0468 35 1 2.0568 -7.0243 3.5842 36 1 0.6789 -6.7473 0.8756 37 1 2.1011 -5.8107 1.4055 38 1 2.5641 -3.8383 0.8847 39 1 2.5404 -3.8493 -0.8984 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001279416376.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:24:24 Heat of formation + Delta-G solvation = -264.351700 kcal Electronic energy + Delta-G solvation = -31348.885412 eV Core-core repulsion = 26126.704985 eV Total energy + Delta-G solvation = -5222.180427 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.111 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -51.81644 -50.29358 -49.34842 -49.04703 -48.30743 -41.58259 -39.74518 -36.69511 -34.34246 -33.81009 -31.74131 -31.31619 -29.09326 -27.21527 -26.94540 -24.76332 -23.65444 -21.85841 -20.95301 -20.88164 -20.26985 -20.26870 -19.70022 -18.87193 -18.60010 -18.04649 -17.73296 -17.17976 -16.72601 -16.32700 -16.25130 -15.96940 -15.82477 -15.80998 -15.51957 -15.42278 -15.33573 -15.13347 -15.12712 -14.88057 -14.58704 -14.44006 -14.37699 -13.90812 -13.63197 -13.50006 -13.38698 -13.24883 -13.11142 -12.76627 -12.72482 -12.54654 -11.98438 -11.87577 -11.70040 -11.54473 -11.39238 -11.19467 -10.70644 -9.72763 -8.85324 -7.81215 -5.20735 0.53500 1.38070 1.45731 1.46778 1.56355 1.67211 1.94453 2.18129 2.29340 2.40296 2.49070 3.09355 3.16107 3.27558 3.32703 3.46591 3.70725 3.84152 3.94909 4.06807 4.10034 4.27062 4.28940 4.53944 4.60923 4.82019 4.87217 4.97555 5.04390 5.15587 5.19866 5.37872 5.48830 5.60670 5.82786 6.29203 6.38820 6.90103 7.13652 7.82947 8.41459 9.23447 Molecular weight = 342.11amu Principal moments of inertia in cm(-1) A = 0.021983 B = 0.002709 C = 0.002672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.387871 B =10331.556625 C =10476.714668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.066 4.066 3 Si 0.974 3.026 4 H -0.266 1.266 5 H -0.292 1.292 6 H -0.296 1.296 7 C -0.237 4.237 8 H 0.081 0.919 9 N -0.623 5.623 10 C 0.178 3.822 11 C -0.109 4.109 12 H 0.116 0.884 13 C 0.128 3.872 14 N -0.603 5.603 15 C 0.526 3.474 16 O -0.576 6.576 17 C -0.183 4.183 18 C 0.273 3.727 19 F -0.171 7.171 20 F -0.167 7.167 21 C 0.442 3.558 22 F -0.150 7.150 23 F -0.167 7.167 24 F -0.147 7.147 25 C 0.104 3.896 26 C -0.095 4.095 27 H 0.132 0.868 28 C 0.134 3.866 29 H 0.245 0.755 30 H -0.009 1.009 31 H 0.053 0.947 32 H 0.035 0.965 33 H 0.063 0.937 34 H 0.180 0.820 35 H 0.170 0.830 36 H 0.119 0.881 37 H 0.093 0.907 38 H 0.023 0.977 39 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.503 -23.771 4.887 24.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.259 4.259 3 Si 0.803 3.197 4 H -0.190 1.190 5 H -0.219 1.219 6 H -0.224 1.224 7 C -0.366 4.366 8 H 0.099 0.901 9 N -0.349 5.349 10 C 0.052 3.948 11 C -0.129 4.129 12 H 0.134 0.866 13 C 0.005 3.995 14 N -0.335 5.335 15 C 0.314 3.686 16 O -0.456 6.456 17 C -0.222 4.222 18 C 0.234 3.766 19 F -0.152 7.152 20 F -0.148 7.148 21 C 0.386 3.614 22 F -0.131 7.131 23 F -0.148 7.148 24 F -0.128 7.128 25 C -0.017 4.017 26 C -0.114 4.114 27 H 0.150 0.850 28 C 0.010 3.990 29 H 0.055 0.945 30 H 0.009 0.991 31 H 0.071 0.929 32 H 0.054 0.946 33 H 0.081 0.919 34 H 0.197 0.803 35 H 0.187 0.813 36 H 0.137 0.863 37 H 0.112 0.888 38 H 0.041 0.959 39 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 3.159 -23.373 5.452 24.207 hybrid contribution 0.157 1.591 0.330 1.632 sum 3.316 -21.782 5.782 22.779 Atomic orbital electron populations 1.70127 1.06122 1.24922 1.58582 1.25588 0.96586 1.00893 1.02790 0.85062 0.78268 0.79764 0.76573 1.19000 1.21877 1.22352 1.19447 0.91018 0.83783 1.42395 0.90083 1.44348 1.02477 1.01302 1.86764 1.20942 0.84340 0.92268 0.97236 1.23088 0.99696 0.97141 0.92956 0.86573 1.21713 0.96545 0.85445 0.95767 1.48273 1.49143 1.24180 1.11946 1.19971 0.81603 0.85888 0.81110 1.90802 1.44466 1.67851 1.42484 1.23016 1.07746 0.98426 0.93052 1.21714 0.77883 0.85093 0.91862 1.93165 1.88113 1.64114 1.69767 1.93160 1.31199 1.94579 1.95828 1.20556 0.79263 0.86015 0.75569 1.93307 1.30838 1.94531 1.94432 1.93285 1.94665 1.90263 1.36606 1.93304 1.88316 1.64474 1.66733 1.22314 0.97477 0.98708 0.83204 1.22797 0.93629 0.94864 1.00060 0.85044 1.21474 0.94908 0.84394 0.98256 0.94485 0.99074 0.92870 0.94629 0.91869 0.80301 0.81277 0.86313 0.88848 0.95872 0.94912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.01 10.17 21.65 0.22 -55.79 16 2 C -0.07 -3.68 5.48 84.86 0.47 -3.22 16 3 Si 0.97 45.46 29.55 68.60 2.03 47.48 16 4 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 5 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 6 H -0.30 -14.00 7.11 99.48 0.71 -13.30 16 7 C -0.24 -12.91 10.25 84.03 0.86 -12.05 16 8 H 0.08 4.24 7.83 -2.91 -0.02 4.21 16 9 N -0.62 -30.11 3.36 -699.62 -2.35 -32.46 16 10 C 0.18 8.24 4.73 86.78 0.41 8.65 16 11 C -0.11 -3.51 4.17 -9.32 -0.04 -3.55 16 12 H 0.12 3.15 8.14 -2.38 -0.02 3.13 16 13 C 0.13 4.41 6.13 86.65 0.53 4.94 16 14 N -0.60 -15.76 3.31 -817.38 -2.71 -18.47 16 15 C 0.53 13.97 7.60 87.66 0.67 14.63 16 16 O -0.58 -21.27 15.11 -3.02 -0.05 -21.31 16 17 C -0.18 -2.73 4.22 29.85 0.13 -2.60 16 18 C 0.27 5.41 1.20 30.60 0.04 5.45 16 19 F -0.17 -4.42 16.10 44.97 0.72 -3.70 16 20 F -0.17 -4.04 16.11 44.97 0.72 -3.32 16 21 C 0.44 6.74 2.65 71.98 0.19 6.93 16 22 F -0.15 -2.05 16.78 44.97 0.75 -1.29 16 23 F -0.17 -3.05 17.28 44.97 0.78 -2.28 16 24 F -0.15 -1.83 16.78 44.97 0.75 -1.08 16 25 C 0.10 1.84 5.87 86.59 0.51 2.35 16 26 C -0.09 -2.36 3.98 -9.49 -0.04 -2.40 16 27 H 0.13 2.50 8.14 -2.39 -0.02 2.48 16 28 C 0.13 4.74 6.64 86.59 0.57 5.31 16 29 H 0.25 14.19 8.31 -92.70 -0.77 13.42 16 30 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 31 H 0.05 2.91 6.04 -2.39 -0.01 2.90 16 32 H 0.04 1.54 7.71 -2.39 -0.02 1.53 16 33 H 0.06 2.23 8.10 -2.39 -0.02 2.21 16 34 H 0.18 1.15 7.80 -2.39 -0.02 1.13 16 35 H 0.17 1.49 7.80 -2.39 -0.02 1.47 16 36 H 0.12 1.04 8.14 -2.38 -0.02 1.02 16 37 H 0.09 1.34 7.47 -2.39 -0.02 1.32 16 38 H 0.02 0.82 7.34 -2.39 -0.02 0.80 16 39 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 Total: -1.00 -74.86 337.91 6.28 -68.58 By element: Atomic # 1 Polarization: -1.92 SS G_CDS: 1.11 Total: -0.81 kcal Atomic # 6 Polarization: 20.15 SS G_CDS: 4.29 Total: 24.44 kcal Atomic # 7 Polarization: -101.88 SS G_CDS: -4.84 Total: -106.72 kcal Atomic # 8 Polarization: -21.27 SS G_CDS: -0.05 Total: -21.31 kcal Atomic # 9 Polarization: -15.40 SS G_CDS: 3.73 Total: -11.67 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.48 kcal Total: -74.86 6.28 -68.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279416376.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -195.769 kcal (2) G-P(sol) polarization free energy of solvation -74.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -270.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -264.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds