Wall clock time and date at job start Wed Apr 1 2020 00:30:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31404 * 1 3 3 Si 1.86796 * 120.00455 * 2 1 4 4 H 1.48492 * 109.47612 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46852 * 300.00225 * 3 2 1 6 6 H 1.48498 * 109.46800 * 59.99606 * 3 2 1 7 7 C 1.38955 * 119.99628 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99905 * 179.97438 * 7 2 1 9 9 N 1.37095 * 120.00537 * 0.02562 * 7 2 1 10 10 C 1.34769 * 120.00289 * 180.02562 * 9 7 2 11 11 O 1.21291 * 120.00213 * 359.97438 * 10 9 7 12 12 C 1.50708 * 119.99874 * 179.97438 * 10 9 7 13 13 N 1.46897 * 109.46919 * 179.97438 * 12 10 9 14 14 C 1.46902 * 110.99998 * 180.02562 * 13 12 10 15 15 C 1.52992 * 109.47126 * 180.02562 * 14 13 12 16 16 N 1.46507 * 109.47337 * 180.02562 * 15 14 13 17 17 C 1.46499 * 119.99848 * 93.34020 * 16 15 14 18 18 C 1.53002 * 109.46842 * 83.97471 * 17 16 15 19 19 O 1.42894 * 109.47405 * 64.99218 * 18 17 16 20 20 C 1.34776 * 119.99619 * 273.35159 * 16 15 14 21 21 O 1.21638 * 119.99683 * 185.38825 * 20 16 15 22 22 C 1.47265 * 120.00189 * 5.38325 * 20 16 15 23 23 C 1.35209 * 123.13711 * 185.73206 * 22 20 16 24 24 S 1.70942 * 108.82324 * 179.87060 * 23 22 20 25 25 C 1.70772 * 91.12895 * 0.32938 * 24 23 22 26 26 N 1.28644 * 110.56229 * 359.80418 * 25 24 23 27 27 H 0.97000 * 119.99802 * 0.02562 * 1 2 3 28 28 H 0.97000 * 119.99192 * 0.02562 * 9 7 2 29 29 H 1.09002 * 109.46886 * 60.00101 * 12 10 9 30 30 H 1.08992 * 109.46978 * 300.00298 * 12 10 9 31 31 H 1.00902 * 111.00190 * 303.95213 * 13 12 10 32 32 H 1.09001 * 109.46737 * 59.99939 * 14 13 12 33 33 H 1.09002 * 109.46748 * 300.00078 * 14 13 12 34 34 H 1.08993 * 109.47660 * 59.99966 * 15 14 13 35 35 H 1.09002 * 109.47215 * 299.99601 * 15 14 13 36 36 H 1.09002 * 109.46893 * 203.96153 * 17 16 15 37 37 H 1.08997 * 109.47889 * 323.96897 * 17 16 15 38 38 H 1.09000 * 109.47146 * 184.99879 * 18 17 16 39 39 H 1.09006 * 109.46976 * 304.99610 * 18 17 16 40 40 H 0.96701 * 114.00058 * 180.02562 * 19 18 17 41 41 H 1.07997 * 125.59121 * 0.02562 * 23 22 20 42 42 H 1.08004 * 124.72191 * 179.83929 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2481 1.6176 0.0000 4 1 3.7081 1.3463 0.0006 5 1 1.8894 2.3963 -1.2125 6 1 1.8893 2.3963 1.2125 7 6 2.0087 -1.2034 -0.0005 8 1 3.0888 -1.2035 -0.0010 9 7 1.3233 -2.3907 -0.0016 10 6 1.9971 -3.5579 -0.0016 11 8 3.2100 -3.5580 -0.0011 12 6 1.2435 -4.8630 -0.0022 13 7 2.1981 -5.9796 -0.0027 14 6 1.4978 -7.2709 -0.0039 15 6 2.5226 -8.4068 -0.0037 16 7 1.8242 -9.6947 -0.0055 17 6 1.5414 -10.3728 -1.2730 18 6 2.7683 -11.1784 -1.7052 19 8 3.0078 -12.2246 -0.7618 20 6 1.4418 -10.2555 1.1589 21 8 0.9506 -11.3682 1.1655 22 6 1.6188 -9.5211 2.4230 23 6 1.3632 -10.0635 3.6349 24 16 1.6942 -8.8986 4.8414 25 6 2.1451 -7.7523 3.6586 26 7 2.0413 -8.2553 2.4791 27 1 -0.4850 0.8401 -0.0004 28 1 0.3533 -2.3906 -0.0024 29 1 0.6172 -4.9205 -0.8925 30 1 0.6165 -4.9209 0.8875 31 1 2.8330 -5.9122 -0.7840 32 1 0.8732 -7.3446 -0.8941 33 1 0.8726 -7.3459 0.8859 34 1 3.1469 -8.3330 0.8867 35 1 3.1481 -8.3320 -0.8932 36 1 0.6928 -11.0446 -1.1441 37 1 1.3056 -9.6319 -2.0368 38 1 2.5907 -11.6106 -2.6899 39 1 3.6374 -10.5218 -1.7480 40 1 3.7730 -12.7769 -0.9729 41 1 1.0104 -11.0687 3.8118 42 1 2.4725 -6.7453 3.8711 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001279672227.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:30:08 Heat of formation + Delta-G solvation = -46.920783 kcal Electronic energy + Delta-G solvation = -27340.182922 eV Core-core repulsion = 23255.420885 eV Total energy + Delta-G solvation = -4084.762036 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.119 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.84044 -38.83720 -38.25681 -37.11908 -36.27128 -34.63062 -33.75904 -31.23175 -30.93928 -30.32459 -28.67524 -26.11612 -25.90473 -23.96748 -23.52769 -22.29842 -21.32238 -19.42737 -19.21244 -18.44186 -17.86069 -17.73562 -16.87822 -16.31198 -16.23835 -15.64537 -15.42803 -15.36918 -14.60140 -14.52322 -14.29849 -14.12790 -13.84202 -13.76930 -13.43909 -13.41322 -13.30992 -13.00920 -12.45126 -12.20284 -12.04597 -11.93814 -11.59412 -11.47986 -11.41388 -11.11568 -10.96553 -10.34477 -10.31904 -10.22034 -10.09294 -9.80761 -9.63688 -9.51075 -9.18881 -8.79106 -8.39030 -7.98412 -7.92263 -6.41175 -3.81840 0.39318 1.11639 1.47157 1.90989 2.84214 3.16296 3.26759 3.28088 3.34026 3.91177 3.93631 4.04168 4.16015 4.47410 4.77842 4.86494 4.92997 4.96777 5.02890 5.12528 5.16287 5.22581 5.27232 5.29554 5.36862 5.56652 5.59450 5.70808 5.83073 5.99834 6.03524 6.23576 6.32382 6.50971 7.16653 7.29004 7.38091 7.42689 7.55842 7.76146 8.07765 8.08499 8.62519 9.18929 9.55932 10.07470 10.76769 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.013583 B = 0.002504 C = 0.002211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2060.832492 B =11178.233701 C =12660.499270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.021 3.979 3 Si 0.929 3.071 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.298 4.298 8 H 0.103 0.897 9 N -0.566 5.566 10 C 0.443 3.557 11 O -0.582 6.582 12 C 0.055 3.945 13 N -0.657 5.657 14 C 0.058 3.942 15 C 0.115 3.885 16 N -0.594 5.594 17 C 0.114 3.886 18 C 0.059 3.941 19 O -0.558 6.558 20 C 0.599 3.401 21 O -0.524 6.524 22 C 0.002 3.998 23 C -0.226 4.226 24 S 0.195 5.805 25 C 0.009 3.991 26 N -0.418 5.418 27 H 0.271 0.729 28 H 0.392 0.608 29 H 0.040 0.960 30 H 0.084 0.916 31 H 0.344 0.656 32 H 0.014 0.986 33 H 0.080 0.920 34 H 0.112 0.888 35 H 0.067 0.933 36 H 0.093 0.907 37 H 0.092 0.908 38 H 0.053 0.947 39 H 0.047 0.953 40 H 0.373 0.627 41 H 0.185 0.815 42 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.605 -21.796 3.507 22.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.180 4.180 3 Si 0.756 3.244 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.427 4.427 8 H 0.121 0.879 9 N -0.203 5.203 10 C 0.228 3.772 11 O -0.466 6.466 12 C -0.078 4.078 13 N -0.289 5.289 14 C -0.073 4.073 15 C -0.008 4.008 16 N -0.326 5.326 17 C -0.009 4.009 18 C -0.020 4.020 19 O -0.362 6.362 20 C 0.384 3.616 21 O -0.400 6.400 22 C -0.133 4.133 23 C -0.368 4.368 24 S 0.450 5.550 25 C -0.290 4.290 26 N -0.132 5.132 27 H 0.080 0.920 28 H 0.225 0.775 29 H 0.057 0.943 30 H 0.102 0.898 31 H 0.163 0.837 32 H 0.033 0.967 33 H 0.098 0.902 34 H 0.130 0.870 35 H 0.085 0.915 36 H 0.111 0.889 37 H 0.110 0.890 38 H 0.071 0.929 39 H 0.065 0.935 40 H 0.219 0.781 41 H 0.203 0.797 42 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 1.679 -21.579 5.059 22.228 hybrid contribution -0.221 0.382 -2.141 2.186 sum 1.458 -21.197 2.918 21.447 Atomic orbital electron populations 1.69620 1.05943 1.28006 1.50831 1.25259 0.95623 0.99708 0.97436 0.85810 0.79715 0.81198 0.77687 1.19216 1.20808 1.20768 1.19747 0.93369 0.82240 1.47365 0.87890 1.41880 1.09195 1.04638 1.64538 1.19832 0.88378 0.84707 0.84258 1.90518 1.13740 1.87092 1.55290 1.21625 0.94312 0.90920 1.00967 1.59904 1.18654 0.99576 1.50797 1.22241 0.95934 0.89008 1.00068 1.21783 0.94558 0.80353 1.04114 1.47578 1.58063 1.21619 1.05330 1.21568 0.97899 0.96011 0.85427 1.22599 0.98022 0.89679 0.91670 1.86680 1.52533 1.45816 1.51132 1.17059 0.77967 0.84457 0.82089 1.90807 1.44658 1.18246 1.86269 1.20565 1.06744 0.91241 0.94761 1.26571 1.07222 1.06858 0.96187 1.82987 1.57024 1.02959 1.12059 1.28781 1.04197 1.05581 0.90471 1.67495 1.13488 1.08481 1.23785 0.91959 0.77509 0.94252 0.89825 0.83689 0.96746 0.90189 0.86975 0.91476 0.88882 0.89032 0.92855 0.93458 0.78135 0.79738 0.77523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.51 13.05 55.50 0.72 -23.79 16 2 C 0.02 0.56 5.50 -17.47 -0.10 0.47 16 3 Si 0.93 20.92 29.55 -169.99 -5.02 15.90 16 4 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 5 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 6 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 7 C -0.30 -8.25 9.68 -14.93 -0.14 -8.39 16 8 H 0.10 3.00 7.16 -52.48 -0.38 2.62 16 9 N -0.57 -14.25 5.29 -10.96 -0.06 -14.31 16 10 C 0.44 10.32 7.82 -10.98 -0.09 10.24 16 11 O -0.58 -15.54 15.78 5.55 0.09 -15.45 16 12 C 0.05 0.96 6.17 -4.97 -0.03 0.93 16 13 N -0.66 -10.43 6.13 -115.06 -0.70 -11.13 16 14 C 0.06 0.77 5.37 -3.83 -0.02 0.75 16 15 C 0.11 1.37 5.23 -4.04 -0.02 1.35 16 16 N -0.59 -7.18 2.43 -175.01 -0.43 -7.60 16 17 C 0.11 1.14 5.82 -4.04 -0.02 1.12 16 18 C 0.06 0.51 7.38 37.16 0.27 0.78 16 19 O -0.56 -5.93 12.97 -35.26 -0.46 -6.39 16 20 C 0.60 8.44 7.42 -12.59 -0.09 8.35 16 21 O -0.52 -8.62 15.82 5.21 0.08 -8.54 16 22 C 0.00 0.02 6.35 -84.53 -0.54 -0.51 16 23 C -0.23 -2.36 10.62 29.65 0.31 -2.05 16 24 S 0.19 1.54 22.97 -107.50 -2.47 -0.93 16 25 C 0.01 0.09 12.17 51.43 0.63 0.72 16 26 N -0.42 -5.14 4.92 -12.36 -0.06 -5.20 16 27 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 28 H 0.39 9.49 7.90 -40.82 -0.32 9.17 16 29 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 31 H 0.34 5.56 8.43 -39.29 -0.33 5.23 16 32 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 33 H 0.08 1.15 6.41 -51.93 -0.33 0.82 16 34 H 0.11 1.49 5.67 -51.93 -0.29 1.20 16 35 H 0.07 0.70 8.05 -51.93 -0.42 0.29 16 36 H 0.09 1.06 7.32 -51.93 -0.38 0.68 16 37 H 0.09 0.71 8.12 -51.93 -0.42 0.29 16 38 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.37 2.25 9.12 45.56 0.42 2.66 16 41 H 0.19 1.76 8.04 -52.49 -0.42 1.34 16 42 H 0.21 1.77 8.06 -52.48 -0.42 1.35 16 LS Contribution 373.04 15.07 5.62 5.62 Total: -1.00 -35.26 373.04 -7.07 -42.34 By element: Atomic # 1 Polarization: 20.29 SS G_CDS: -4.55 Total: 15.74 kcal Atomic # 6 Polarization: 13.58 SS G_CDS: 0.16 Total: 13.75 kcal Atomic # 7 Polarization: -61.51 SS G_CDS: -0.53 Total: -62.04 kcal Atomic # 8 Polarization: -30.09 SS G_CDS: -0.29 Total: -30.38 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Atomic # 16 Polarization: 1.54 SS G_CDS: -2.47 Total: -0.93 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -35.26 -7.07 -42.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279672227.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.583 kcal (2) G-P(sol) polarization free energy of solvation -35.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds