Wall clock time and date at job start Wed Apr 1 2020 00:30:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31404 * 1 3 3 Si 1.86796 * 120.00455 * 2 1 4 4 H 1.48492 * 109.47612 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46852 * 300.00225 * 3 2 1 6 6 H 1.48498 * 109.46800 * 59.99606 * 3 2 1 7 7 C 1.38955 * 119.99628 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99905 * 179.97438 * 7 2 1 9 9 N 1.37095 * 120.00537 * 0.02562 * 7 2 1 10 10 C 1.34769 * 120.00289 * 180.02562 * 9 7 2 11 11 O 1.21291 * 120.00213 * 359.97438 * 10 9 7 12 12 C 1.50708 * 119.99874 * 179.97438 * 10 9 7 13 13 N 1.46897 * 109.46919 * 179.97438 * 12 10 9 14 14 C 1.46902 * 110.99998 * 180.02562 * 13 12 10 15 15 C 1.52992 * 109.47126 * 180.02562 * 14 13 12 16 16 N 1.46507 * 109.47337 * 180.02562 * 15 14 13 17 17 C 1.46499 * 119.99848 * 93.34020 * 16 15 14 18 18 C 1.53002 * 109.46842 * 83.97471 * 17 16 15 19 19 O 1.42894 * 109.47405 * 64.99218 * 18 17 16 20 20 C 1.34776 * 119.99619 * 273.35159 * 16 15 14 21 21 O 1.21638 * 119.99683 * 185.38825 * 20 16 15 22 22 C 1.47265 * 120.00189 * 5.38325 * 20 16 15 23 23 C 1.35209 * 123.13711 * 185.73206 * 22 20 16 24 24 S 1.70942 * 108.82324 * 179.87060 * 23 22 20 25 25 C 1.70772 * 91.12895 * 0.32938 * 24 23 22 26 26 N 1.28644 * 110.56229 * 359.80418 * 25 24 23 27 27 H 0.97000 * 119.99802 * 0.02562 * 1 2 3 28 28 H 0.97000 * 119.99192 * 0.02562 * 9 7 2 29 29 H 1.09002 * 109.46886 * 60.00101 * 12 10 9 30 30 H 1.08992 * 109.46978 * 300.00298 * 12 10 9 31 31 H 1.00902 * 111.00190 * 303.95213 * 13 12 10 32 32 H 1.09001 * 109.46737 * 59.99939 * 14 13 12 33 33 H 1.09002 * 109.46748 * 300.00078 * 14 13 12 34 34 H 1.08993 * 109.47660 * 59.99966 * 15 14 13 35 35 H 1.09002 * 109.47215 * 299.99601 * 15 14 13 36 36 H 1.09002 * 109.46893 * 203.96153 * 17 16 15 37 37 H 1.08997 * 109.47889 * 323.96897 * 17 16 15 38 38 H 1.09000 * 109.47146 * 184.99879 * 18 17 16 39 39 H 1.09006 * 109.46976 * 304.99610 * 18 17 16 40 40 H 0.96701 * 114.00058 * 180.02562 * 19 18 17 41 41 H 1.07997 * 125.59121 * 0.02562 * 23 22 20 42 42 H 1.08004 * 124.72191 * 179.83929 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2481 1.6176 0.0000 4 1 3.7081 1.3463 0.0006 5 1 1.8894 2.3963 -1.2125 6 1 1.8893 2.3963 1.2125 7 6 2.0087 -1.2034 -0.0005 8 1 3.0888 -1.2035 -0.0010 9 7 1.3233 -2.3907 -0.0016 10 6 1.9971 -3.5579 -0.0016 11 8 3.2100 -3.5580 -0.0011 12 6 1.2435 -4.8630 -0.0022 13 7 2.1981 -5.9796 -0.0027 14 6 1.4978 -7.2709 -0.0039 15 6 2.5226 -8.4068 -0.0037 16 7 1.8242 -9.6947 -0.0055 17 6 1.5414 -10.3728 -1.2730 18 6 2.7683 -11.1784 -1.7052 19 8 3.0078 -12.2246 -0.7618 20 6 1.4418 -10.2555 1.1589 21 8 0.9506 -11.3682 1.1655 22 6 1.6188 -9.5211 2.4230 23 6 1.3632 -10.0635 3.6349 24 16 1.6942 -8.8986 4.8414 25 6 2.1451 -7.7523 3.6586 26 7 2.0413 -8.2553 2.4791 27 1 -0.4850 0.8401 -0.0004 28 1 0.3533 -2.3906 -0.0024 29 1 0.6172 -4.9205 -0.8925 30 1 0.6165 -4.9209 0.8875 31 1 2.8330 -5.9122 -0.7840 32 1 0.8732 -7.3446 -0.8941 33 1 0.8726 -7.3459 0.8859 34 1 3.1469 -8.3330 0.8867 35 1 3.1481 -8.3320 -0.8932 36 1 0.6928 -11.0446 -1.1441 37 1 1.3056 -9.6319 -2.0368 38 1 2.5907 -11.6106 -2.6899 39 1 3.6374 -10.5218 -1.7480 40 1 3.7730 -12.7769 -0.9729 41 1 1.0104 -11.0687 3.8118 42 1 2.4725 -6.7453 3.8711 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001279672227.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:30:07 Heat of formation + Delta-G solvation = -76.389847 kcal Electronic energy + Delta-G solvation = -27341.460796 eV Core-core repulsion = 23255.420885 eV Total energy + Delta-G solvation = -4086.039911 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.119 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.74111 -40.10466 -39.70015 -38.02224 -37.32780 -36.07184 -35.47852 -33.23658 -31.78549 -31.26793 -29.79832 -27.57107 -26.86770 -25.60933 -24.31506 -23.40296 -22.17772 -21.08436 -20.20126 -19.88917 -19.29421 -18.46526 -17.87481 -17.80282 -17.09459 -17.00735 -16.52508 -16.47690 -16.25701 -15.84788 -15.42662 -15.26020 -15.08524 -14.89669 -14.74833 -14.40522 -14.23404 -14.01525 -13.82551 -13.56568 -13.33179 -13.12081 -12.92174 -12.78482 -12.69540 -12.37739 -12.28798 -12.09868 -12.05822 -11.48508 -11.21251 -10.89152 -10.60147 -10.44834 -10.32590 -9.98707 -9.97171 -9.66207 -9.22506 -8.44400 -5.92754 -0.40879 0.39456 0.71002 1.02069 1.38383 1.43716 1.57822 1.93670 2.08748 2.30950 2.33943 2.95262 3.20788 3.23431 3.41749 3.64321 3.91112 4.07689 4.15356 4.21047 4.23769 4.32582 4.35606 4.40231 4.49458 4.52543 4.56603 4.62203 4.67048 4.78958 4.89550 5.01822 5.27233 5.43790 5.60387 5.91892 6.12752 6.24770 6.50613 6.55520 6.62871 6.91798 7.11079 7.15525 7.59627 8.14606 8.73384 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.013583 B = 0.002504 C = 0.002211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2060.832492 B =11178.233701 C =12660.499270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.014 4.014 3 Si 0.992 3.008 4 H -0.272 1.272 5 H -0.272 1.272 6 H -0.272 1.272 7 C -0.330 4.330 8 H 0.080 0.920 9 N -0.575 5.575 10 C 0.443 3.557 11 O -0.618 6.618 12 C 0.070 3.930 13 N -0.663 5.663 14 C 0.069 3.931 15 C 0.124 3.876 16 N -0.590 5.590 17 C 0.105 3.895 18 C 0.060 3.940 19 O -0.587 6.587 20 C 0.591 3.409 21 O -0.560 6.560 22 C -0.024 4.024 23 C -0.237 4.237 24 S 0.282 5.718 25 C -0.012 4.012 26 N -0.439 5.439 27 H 0.277 0.723 28 H 0.395 0.605 29 H 0.060 0.940 30 H 0.097 0.903 31 H 0.343 0.657 32 H 0.025 0.975 33 H 0.070 0.930 34 H 0.100 0.900 35 H 0.084 0.916 36 H 0.075 0.925 37 H 0.116 0.884 38 H 0.078 0.922 39 H 0.055 0.945 40 H 0.390 0.610 41 H 0.190 0.810 42 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.586 -21.608 3.722 21.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.214 4.214 3 Si 0.816 3.184 4 H -0.196 1.196 5 H -0.198 1.198 6 H -0.197 1.197 7 C -0.459 4.459 8 H 0.098 0.902 9 N -0.213 5.213 10 C 0.230 3.770 11 O -0.505 6.505 12 C -0.063 4.063 13 N -0.296 5.296 14 C -0.061 4.061 15 C 0.001 3.999 16 N -0.321 5.321 17 C -0.017 4.017 18 C -0.018 4.018 19 O -0.395 6.395 20 C 0.377 3.623 21 O -0.438 6.438 22 C -0.160 4.160 23 C -0.380 4.380 24 S 0.538 5.462 25 C -0.311 4.311 26 N -0.154 5.154 27 H 0.086 0.914 28 H 0.229 0.771 29 H 0.078 0.922 30 H 0.115 0.885 31 H 0.162 0.838 32 H 0.043 0.957 33 H 0.088 0.912 34 H 0.118 0.882 35 H 0.102 0.898 36 H 0.093 0.907 37 H 0.134 0.866 38 H 0.096 0.904 39 H 0.073 0.927 40 H 0.238 0.762 41 H 0.207 0.793 42 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 1.655 -21.396 5.267 22.097 hybrid contribution -0.208 0.262 -2.127 2.154 sum 1.447 -21.134 3.139 21.415 Atomic orbital electron populations 1.69681 1.06872 1.29152 1.50663 1.26031 0.96509 1.02413 0.96431 0.84879 0.78122 0.77172 0.78234 1.19647 1.19752 1.19706 1.19701 0.92699 0.83960 1.49562 0.90200 1.41948 1.09296 1.04769 1.65266 1.20786 0.88219 0.85960 0.82011 1.90491 1.15659 1.87907 1.56401 1.21453 0.93985 0.88317 1.02498 1.59865 1.18655 1.00063 1.50988 1.22146 0.95999 0.87912 1.00013 1.21650 0.94097 0.79813 1.04369 1.47642 1.57331 1.21436 1.05648 1.21813 0.98162 0.96560 0.85139 1.22658 0.97462 0.89420 0.92262 1.86638 1.53789 1.46686 1.52351 1.17386 0.77553 0.84256 0.83074 1.90771 1.46490 1.19698 1.86878 1.20508 1.08779 0.91844 0.94843 1.26856 1.06433 1.07871 0.96859 1.82653 1.54473 1.00054 1.09046 1.29029 1.04324 1.06677 0.91053 1.67470 1.14284 1.08480 1.25184 0.91392 0.77117 0.92208 0.88529 0.83812 0.95675 0.91158 0.88207 0.89755 0.90654 0.86594 0.90358 0.92722 0.76185 0.79324 0.76563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.53 13.05 21.66 0.28 -49.25 16 2 C -0.01 -0.76 5.50 84.93 0.47 -0.30 16 3 Si 0.99 42.48 29.55 68.60 2.03 44.51 16 4 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 5 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 6 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 7 C -0.33 -18.49 9.68 84.04 0.81 -17.67 16 8 H 0.08 4.78 7.16 -2.91 -0.02 4.76 16 9 N -0.58 -29.15 5.29 -306.98 -1.62 -30.78 16 10 C 0.44 20.60 7.82 87.66 0.69 21.29 16 11 O -0.62 -33.32 15.78 -3.07 -0.05 -33.37 16 12 C 0.07 2.38 6.17 85.56 0.53 2.91 16 13 N -0.66 -20.24 6.13 -517.94 -3.17 -23.42 16 14 C 0.07 1.73 5.37 86.30 0.46 2.20 16 15 C 0.12 2.82 5.23 86.38 0.45 3.27 16 16 N -0.59 -13.97 2.43 -825.86 -2.01 -15.98 16 17 C 0.11 2.02 5.82 86.38 0.50 2.52 16 18 C 0.06 0.96 7.38 71.98 0.53 1.49 16 19 O -0.59 -12.25 12.97 -148.95 -1.93 -14.18 16 20 C 0.59 16.85 7.42 86.62 0.64 17.49 16 21 O -0.56 -18.94 15.82 -4.12 -0.07 -19.00 16 22 C -0.02 -0.62 6.35 40.56 0.26 -0.36 16 23 C -0.24 -4.80 10.62 67.12 0.71 -4.09 16 24 S 0.28 3.93 22.97 -56.49 -1.30 2.63 16 25 C -0.01 -0.23 12.17 130.71 1.59 1.36 16 26 N -0.44 -10.58 4.92 -193.02 -0.95 -11.53 16 27 H 0.28 13.89 8.31 -92.71 -0.77 13.11 16 28 H 0.40 19.15 7.90 -92.71 -0.73 18.42 16 29 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.10 3.07 8.14 -2.39 -0.02 3.05 16 31 H 0.34 10.68 8.43 -89.69 -0.76 9.93 16 32 H 0.03 0.58 8.14 -2.39 -0.02 0.57 16 33 H 0.07 1.95 6.41 -2.39 -0.02 1.93 16 34 H 0.10 2.61 5.67 -2.39 -0.01 2.60 16 35 H 0.08 1.62 8.05 -2.39 -0.02 1.60 16 36 H 0.07 1.73 7.32 -2.39 -0.02 1.71 16 37 H 0.12 1.58 8.12 -2.39 -0.02 1.56 16 38 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.05 0.78 8.14 -2.38 -0.02 0.76 16 40 H 0.39 4.47 9.12 -74.06 -0.68 3.80 16 41 H 0.19 3.54 8.04 -2.91 -0.02 3.51 16 42 H 0.22 3.48 8.06 -2.91 -0.02 3.45 16 Total: -1.00 -76.62 373.04 -2.21 -78.83 By element: Atomic # 1 Polarization: 42.51 SS G_CDS: -1.06 Total: 41.44 kcal Atomic # 6 Polarization: 22.45 SS G_CDS: 7.65 Total: 30.10 kcal Atomic # 7 Polarization: -123.48 SS G_CDS: -7.47 Total: -130.95 kcal Atomic # 8 Polarization: -64.51 SS G_CDS: -2.04 Total: -66.55 kcal Atomic # 14 Polarization: 42.48 SS G_CDS: 2.03 Total: 44.51 kcal Atomic # 16 Polarization: 3.93 SS G_CDS: -1.30 Total: 2.63 kcal Total: -76.62 -2.21 -78.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279672227.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.437 kcal (2) G-P(sol) polarization free energy of solvation -76.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds