Wall clock time and date at job start Wed Apr 1 2020 00:36:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86800 * 120.00233 * 2 1 4 4 H 1.48510 * 109.47082 * 270.00186 * 3 2 1 5 5 H 1.48504 * 109.47159 * 29.99847 * 3 2 1 6 6 H 1.48489 * 109.47333 * 150.00090 * 3 2 1 7 7 C 1.38798 * 119.99781 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00371 * 0.02562 * 7 2 1 9 9 S 1.76203 * 119.99832 * 179.72124 * 7 2 1 10 10 C 1.81004 * 99.99907 * 180.27629 * 9 7 2 11 11 C 1.50699 * 109.46742 * 180.02562 * 10 9 7 12 12 O 1.21276 * 120.00732 * 0.02562 * 11 10 9 13 13 N 1.34778 * 119.99778 * 179.97438 * 11 10 9 14 14 C 1.47160 * 120.98137 * 359.72590 * 13 11 10 15 15 C 1.52882 * 108.60408 * 230.49585 * 14 13 11 16 16 O 1.42957 * 109.30117 * 307.93483 * 15 14 13 17 17 C 1.42960 * 114.16727 * 62.44451 * 16 15 14 18 18 H 1.09003 * 109.54980 * 57.37600 * 17 16 15 19 19 C 1.53002 * 109.51125 * 177.49656 * 17 16 15 20 20 N 1.46900 * 109.47255 * 299.74855 * 19 17 16 21 21 C 1.46897 * 110.99768 * 180.02562 * 20 19 17 22 22 C 1.50707 * 109.46994 * 180.02562 * 21 20 19 23 23 C 1.40895 * 125.30153 * 95.00012 * 22 21 20 24 24 N 1.29950 * 109.39155 * 179.97438 * 23 22 21 25 25 O 1.41868 * 107.41477 * 359.97438 * 24 23 22 26 26 N 1.29949 * 125.30888 * 274.69535 * 22 21 20 27 27 C 1.47155 * 120.98584 * 179.97438 * 13 11 10 28 28 H 0.97000 * 119.99427 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.47255 * 300.00302 * 10 9 7 30 30 H 1.09001 * 109.46783 * 60.00610 * 10 9 7 31 31 H 1.08997 * 109.67795 * 350.27369 * 14 13 11 32 32 H 1.08997 * 109.67946 * 110.83212 * 14 13 11 33 33 H 1.09003 * 109.57948 * 187.92076 * 15 14 13 34 34 H 1.09004 * 109.36846 * 67.81771 * 15 14 13 35 35 H 1.08998 * 109.47262 * 59.75093 * 19 17 16 36 36 H 1.09007 * 109.47070 * 179.75389 * 19 17 16 37 37 H 1.00905 * 110.99736 * 56.04612 * 20 19 17 38 38 H 1.08995 * 109.47352 * 300.00150 * 21 20 19 39 39 H 1.08997 * 109.47218 * 60.00241 * 21 20 19 40 40 H 1.08001 * 125.30531 * 359.97438 * 23 22 21 41 41 H 1.08997 * 109.68332 * 249.17320 * 27 13 11 42 42 H 1.09003 * 109.67765 * 9.69066 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4979 2.0464 -1.4002 5 1 1.4478 2.6527 0.7000 6 1 3.5479 1.4401 0.7000 7 6 2.0103 -1.2020 0.0005 8 1 1.4703 -2.1374 0.0005 9 16 3.7723 -1.2021 -0.0069 10 6 4.0865 -2.9846 -0.0117 11 6 5.5729 -3.2326 -0.0178 12 8 6.3440 -2.2965 -0.0183 13 7 6.0456 -4.4947 -0.0216 14 6 5.1297 -5.6466 -0.0139 15 6 5.5569 -6.6019 1.1007 16 8 6.9486 -6.8977 0.9619 17 6 7.8046 -5.7602 1.0930 18 1 7.6362 -5.2865 2.0601 19 6 9.2649 -6.2050 0.9893 20 7 9.5629 -7.1616 2.0635 21 6 10.9598 -7.6110 1.9956 22 6 11.2275 -8.5894 3.1102 23 6 11.1556 -9.9920 2.9971 24 7 11.4452 -10.5326 4.1428 25 8 11.7198 -9.4789 5.0522 26 7 11.5661 -8.2712 4.3238 27 6 7.4927 -4.7618 -0.0281 28 1 -0.4849 0.8401 -0.0004 29 1 3.6473 -3.4334 0.8793 30 1 3.6399 -3.4299 -0.9007 31 1 4.1110 -5.3043 0.1680 32 1 5.1790 -6.1612 -0.9735 33 1 4.9800 -7.5242 1.0323 34 1 5.3794 -6.1315 2.0678 35 1 9.4322 -6.6802 0.0227 36 1 9.9169 -5.3366 1.0849 37 1 8.9286 -7.9458 2.0355 38 1 11.1393 -8.0958 1.0361 39 1 11.6232 -6.7522 2.0984 40 1 10.8997 -10.5334 2.0984 41 1 7.7834 -5.1859 -0.9892 42 1 8.0380 -3.8338 0.1436 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001280557981.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:36:40 Heat of formation + Delta-G solvation = -1.567912 kcal Electronic energy + Delta-G solvation = -26345.277506 eV Core-core repulsion = 22262.482117 eV Total energy + Delta-G solvation = -4082.795388 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.119 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.40221 -41.42238 -39.55223 -37.47637 -35.82282 -34.68010 -34.61340 -33.76501 -32.81693 -31.07686 -29.47924 -27.97143 -27.62925 -25.42511 -24.36776 -24.08022 -22.37648 -21.91255 -20.68668 -19.63105 -18.39497 -18.18083 -17.76388 -17.36260 -17.12239 -17.07475 -16.91500 -16.67706 -16.14541 -15.88009 -15.76884 -15.51795 -15.25813 -14.94050 -14.80552 -14.75532 -14.65097 -13.94781 -13.64213 -13.46602 -13.31893 -13.07715 -13.02486 -12.80734 -12.78419 -12.66370 -12.51581 -12.26273 -12.23137 -11.94542 -11.89041 -11.73574 -11.21140 -11.17824 -10.94708 -10.54168 -9.66447 -9.47386 -9.01923 -8.52438 -6.23727 -0.49041 0.94179 1.02308 1.30511 1.43071 1.45491 1.51473 1.56135 1.93934 2.16134 2.23865 2.63753 2.70388 2.85925 2.86274 3.22551 3.47176 3.81021 3.83841 3.93440 3.97432 4.07389 4.11740 4.13148 4.25891 4.32871 4.40228 4.43222 4.49565 4.58772 4.67319 4.68589 4.73440 4.80471 4.90611 4.99164 5.34342 5.69810 5.81220 5.87863 6.09180 6.10377 6.12477 6.33947 6.92803 6.99300 8.59696 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.027151 B = 0.001779 C = 0.001756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.034974 B =15735.228768 C =15937.664634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.047 3.953 3 Si 0.913 3.087 4 H -0.262 1.262 5 H -0.260 1.260 6 H -0.238 1.238 7 C -0.528 4.528 8 H 0.064 0.936 9 S -0.177 6.177 10 C -0.107 4.107 11 C 0.536 3.464 12 O -0.559 6.559 13 N -0.612 5.612 14 C 0.065 3.935 15 C 0.053 3.947 16 O -0.376 6.376 17 C 0.087 3.913 18 H 0.052 0.948 19 C 0.081 3.919 20 N -0.698 5.698 21 C 0.125 3.875 22 C 0.087 3.913 23 C 0.081 3.919 24 N -0.304 5.304 25 O -0.027 6.027 26 N -0.290 5.290 27 C 0.084 3.916 28 H 0.277 0.723 29 H 0.112 0.888 30 H 0.113 0.887 31 H 0.099 0.901 32 H 0.099 0.901 33 H 0.138 0.862 34 H 0.047 0.953 35 H 0.072 0.928 36 H 0.099 0.901 37 H 0.358 0.642 38 H 0.113 0.887 39 H 0.103 0.897 40 H 0.265 0.735 41 H 0.096 0.904 42 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.625 -23.303 -1.808 31.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.159 4.159 3 Si 0.735 3.265 4 H -0.187 1.187 5 H -0.184 1.184 6 H -0.162 1.162 7 C -0.676 4.676 8 H 0.082 0.918 9 S 0.050 5.950 10 C -0.258 4.258 11 C 0.324 3.676 12 O -0.437 6.437 13 N -0.347 5.347 14 C -0.058 4.058 15 C -0.024 4.024 16 O -0.294 6.294 17 C 0.027 3.973 18 H 0.070 0.930 19 C -0.048 4.048 20 N -0.332 5.332 21 C -0.004 4.004 22 C -0.097 4.097 23 C -0.123 4.123 24 N -0.051 5.051 25 O -0.160 6.160 26 N -0.036 5.036 27 C -0.038 4.038 28 H 0.086 0.914 29 H 0.130 0.870 30 H 0.132 0.868 31 H 0.118 0.882 32 H 0.117 0.883 33 H 0.155 0.845 34 H 0.066 0.934 35 H 0.090 0.910 36 H 0.117 0.883 37 H 0.177 0.823 38 H 0.131 0.869 39 H 0.121 0.879 40 H 0.281 0.719 41 H 0.114 0.886 42 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 23.184 -21.673 0.084 31.737 hybrid contribution -1.733 -0.368 -1.124 2.099 sum 21.451 -22.041 -1.040 30.774 Atomic orbital electron populations 1.70012 1.07231 1.29006 1.49029 1.25539 0.95264 1.02178 0.92910 0.85890 0.80665 0.79739 0.80222 1.18653 1.18387 1.16179 1.22436 0.90069 0.96736 1.58336 0.91767 1.84748 1.06666 1.06027 1.97566 1.23272 0.95723 0.99637 1.07130 1.20023 0.89612 0.82782 0.75203 1.90679 1.59219 1.43232 1.50614 1.48093 1.08003 1.04982 1.73581 1.22687 0.94409 0.86607 1.02051 1.22986 0.82276 1.00647 0.96492 1.87855 1.16482 1.31982 1.93126 1.22433 0.91525 0.86634 0.96672 0.93013 1.21871 0.92043 0.97281 0.93628 1.60222 1.03204 1.20548 1.49270 1.20718 0.91349 0.95991 0.92344 1.25134 0.94957 0.95440 0.94190 1.26926 0.93775 0.92316 0.99270 1.79910 1.12828 1.11046 1.01287 1.93418 1.81934 1.07902 1.32729 1.79991 1.13110 1.04515 1.06008 1.22354 0.80291 1.00531 1.00674 0.91366 0.87018 0.86844 0.88226 0.88295 0.84467 0.93415 0.91009 0.88314 0.82288 0.86915 0.87883 0.71934 0.88605 0.89500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.91 13.97 21.65 0.30 -54.61 16 2 C 0.05 2.70 5.50 84.86 0.47 3.17 16 3 Si 0.91 44.46 27.73 68.60 1.90 46.36 16 4 H -0.26 -12.43 7.11 99.48 0.71 -11.72 16 5 H -0.26 -11.88 7.11 99.48 0.71 -11.18 16 6 H -0.24 -11.59 6.74 99.48 0.67 -10.92 16 7 C -0.53 -30.17 10.04 67.95 0.68 -29.49 16 8 H 0.06 3.85 8.03 -2.91 -0.02 3.82 16 9 S -0.18 -8.77 18.55 -56.49 -1.05 -9.82 16 10 C -0.11 -3.90 4.53 71.24 0.32 -3.58 16 11 C 0.54 17.97 7.73 87.66 0.68 18.65 16 12 O -0.56 -23.20 15.33 -3.02 -0.05 -23.25 16 13 N -0.61 -14.15 3.03 -818.06 -2.47 -16.62 16 14 C 0.06 1.02 6.51 86.21 0.56 1.58 16 15 C 0.05 0.67 6.97 71.94 0.50 1.17 16 16 O -0.38 -4.94 9.73 -148.98 -1.45 -6.39 16 17 C 0.09 1.22 3.05 30.71 0.09 1.31 16 18 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 19 C 0.08 0.63 5.42 86.30 0.47 1.10 16 20 N -0.70 -5.77 6.49 -517.93 -3.36 -9.13 16 21 C 0.13 0.50 6.23 85.56 0.53 1.04 16 22 C 0.09 0.86 6.70 43.49 0.29 1.15 16 23 C 0.08 0.52 11.90 85.62 1.02 1.54 16 24 N -0.30 -4.92 12.98 -56.80 -0.74 -5.66 16 25 O -0.03 -0.61 13.71 70.19 0.96 0.36 16 26 N -0.29 -5.58 12.98 -47.15 -0.61 -6.19 16 27 C 0.08 1.52 5.93 86.36 0.51 2.03 16 28 H 0.28 15.38 8.31 -92.71 -0.77 14.61 16 29 H 0.11 3.74 7.65 -2.40 -0.02 3.72 16 30 H 0.11 3.77 8.03 -2.39 -0.02 3.75 16 31 H 0.10 1.61 6.05 -2.39 -0.01 1.60 16 32 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.14 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.05 0.73 8.14 -2.38 -0.02 0.71 16 35 H 0.07 0.26 8.14 -2.39 -0.02 0.24 16 36 H 0.10 0.72 8.14 -2.38 -0.02 0.70 16 37 H 0.36 2.69 8.12 -89.69 -0.73 1.96 16 38 H 0.11 -0.43 8.14 -2.39 -0.02 -0.45 16 39 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 40 H 0.27 -1.47 8.06 -2.91 -0.02 -1.49 16 41 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 42 H 0.09 1.91 7.08 -2.39 -0.02 1.89 16 Total: -1.00 -82.95 370.59 -0.14 -83.08 By element: Atomic # 1 Polarization: 1.90 SS G_CDS: 0.29 Total: 2.19 kcal Atomic # 6 Polarization: -6.45 SS G_CDS: 6.13 Total: -0.32 kcal Atomic # 7 Polarization: -85.33 SS G_CDS: -6.88 Total: -92.22 kcal Atomic # 8 Polarization: -28.75 SS G_CDS: -0.53 Total: -29.28 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 1.90 Total: 46.36 kcal Atomic # 16 Polarization: -8.77 SS G_CDS: -1.05 Total: -9.82 kcal Total: -82.95 -0.14 -83.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001280557981.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.515 kcal (2) G-P(sol) polarization free energy of solvation -82.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds