Wall clock time and date at job start Wed Apr 1 2020 01:47:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47021 * 2 1 4 4 H 1.09002 * 109.46901 * 305.00289 * 3 2 1 5 5 C 1.52998 * 109.47292 * 185.00123 * 3 2 1 6 6 N 1.46497 * 109.47174 * 185.00006 * 5 3 2 7 7 C 1.34783 * 119.99701 * 180.02562 * 6 5 3 8 8 O 1.21274 * 120.00162 * 359.97438 * 7 6 5 9 9 C 1.50698 * 119.99713 * 180.02562 * 7 6 5 10 10 S 1.80999 * 109.47092 * 179.97438 * 9 7 6 11 11 C 1.76200 * 99.99889 * 179.97438 * 10 9 7 12 12 H 1.08000 * 120.00431 * 0.02562 * 11 10 9 13 13 C 1.38802 * 119.99582 * 179.97438 * 11 10 9 14 14 N 1.31627 * 120.00397 * 0.02562 * 13 11 10 15 15 Si 1.86810 * 119.99656 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47017 * 90.00005 * 15 13 11 17 17 H 1.48502 * 109.46770 * 210.00202 * 15 13 11 18 18 H 1.48500 * 109.46853 * 329.99950 * 15 13 11 19 19 N 1.46496 * 109.47234 * 64.99798 * 3 2 1 20 20 C 1.34777 * 120.00258 * 275.00436 * 19 3 2 21 21 O 1.21498 * 120.00013 * 359.97438 * 20 19 3 22 22 C 1.48276 * 120.00029 * 180.02562 * 20 19 3 23 23 N 1.31611 * 128.71337 * 359.66848 * 22 20 19 24 24 O 1.20904 * 109.17866 * 179.86385 * 23 22 20 25 25 N 1.20835 * 115.90869 * 0.45736 * 24 23 22 26 26 C 1.30650 * 109.62097 * 359.72026 * 25 24 23 27 27 C 1.50698 * 128.64299 * 180.02562 * 26 25 24 28 28 H 1.09007 * 109.46942 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47425 * 299.99831 * 1 2 3 30 30 H 1.09004 * 109.47481 * 60.00160 * 1 2 3 31 31 H 1.09004 * 109.46916 * 240.00416 * 2 1 3 32 32 H 1.08993 * 109.47354 * 120.00295 * 2 1 3 33 33 H 1.09001 * 109.47146 * 304.99888 * 5 3 2 34 34 H 1.09006 * 109.46999 * 64.99987 * 5 3 2 35 35 H 0.96998 * 120.00251 * 0.02562 * 6 5 3 36 36 H 1.09007 * 109.47252 * 299.99643 * 9 7 6 37 37 H 1.09006 * 109.47240 * 59.99352 * 9 7 6 38 38 H 0.96997 * 119.99887 * 180.02562 * 14 13 11 39 39 H 0.96999 * 119.99694 * 94.99826 * 19 3 2 40 40 H 1.08999 * 109.46638 * 269.97631 * 27 26 25 41 41 H 1.08997 * 109.46922 * 29.96875 * 27 26 25 42 42 H 1.08998 * 109.47466 * 149.97167 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 3.5648 1.4444 -0.1257 6 7 4.0629 2.8168 -0.0060 7 6 5.3856 3.0631 -0.0869 8 8 6.1633 2.1485 -0.2584 9 6 5.8981 4.4748 0.0369 10 16 7.7019 4.4771 -0.1120 11 6 8.0213 6.2010 0.0637 12 1 7.2026 6.8895 0.2125 13 6 9.3252 6.6740 0.0118 14 7 10.3231 5.8349 -0.1691 15 14 9.6638 8.5016 0.1989 16 1 9.8678 8.8228 1.6343 17 1 10.8848 8.8596 -0.5669 18 1 8.5081 9.2749 -0.3222 19 7 1.6524 2.0975 1.2517 20 6 0.4350 2.6643 1.3669 21 8 -0.3408 2.6325 0.4324 22 6 0.0430 3.3278 2.6337 23 7 0.7374 3.4575 3.7441 24 8 0.0781 4.0636 4.5564 25 7 -1.0264 4.3968 4.1971 26 6 -1.2255 4.0021 2.9677 27 6 -2.4470 4.1896 2.1053 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5138 0.8899 33 1 3.9954 0.8312 0.6659 34 1 3.8498 1.0377 -1.0961 35 1 3.4409 3.5483 0.1316 36 1 5.4671 5.0886 -0.7542 37 1 5.6134 4.8810 1.0076 38 1 11.2342 6.1654 -0.2049 39 1 2.2719 2.1231 1.9977 40 1 -3.1229 3.3458 2.2443 41 1 -2.9541 5.1118 2.3891 42 1 -2.1477 4.2469 1.0588 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001285037920.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:47:09 Heat of formation + Delta-G solvation = 33.212589 kcal Electronic energy + Delta-G solvation = -26874.446022 eV Core-core repulsion = 22793.158829 eV Total energy + Delta-G solvation = -4081.287193 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.119 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -47.32434 -40.69961 -39.20450 -36.98721 -35.62530 -35.19493 -33.93941 -32.84048 -32.45203 -30.25667 -29.87013 -28.12277 -26.22641 -25.50390 -23.59067 -23.10381 -21.99065 -21.07525 -20.38260 -19.48682 -18.96418 -17.92641 -17.58685 -17.04983 -16.40697 -16.05634 -15.81382 -15.27160 -14.93600 -14.82329 -14.49820 -14.09586 -14.01889 -13.96886 -13.79931 -13.68002 -13.43889 -13.03930 -12.67815 -12.50563 -12.46391 -12.32543 -11.97715 -11.85630 -11.63738 -11.51761 -11.26101 -11.08143 -11.04828 -10.82865 -10.78368 -10.77368 -9.85133 -9.70015 -9.48389 -9.10656 -9.03798 -8.27719 -6.53253 -6.24082 -3.95003 0.27909 0.85388 2.10218 2.41711 2.88052 2.93278 2.97021 3.00444 3.21080 3.25720 3.29499 3.39039 3.63008 4.16340 4.18149 4.21268 4.35239 4.55968 4.62821 4.67734 4.94829 4.98973 5.04254 5.10387 5.11291 5.14114 5.33882 5.40003 5.47614 5.52953 5.61416 5.66208 5.71966 5.82940 5.90103 6.03872 6.08897 6.43883 6.76267 7.41884 7.54811 7.57764 7.98265 8.32864 8.49648 9.21424 10.83341 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.011646 B = 0.002485 C = 0.002143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2403.771665 B =11263.062226 C =13063.143329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.133 4.133 3 C 0.135 3.865 4 H 0.103 0.897 5 C 0.112 3.888 6 N -0.741 5.741 7 C 0.533 3.467 8 O -0.514 6.514 9 C -0.154 4.154 10 S -0.059 6.059 11 C -0.536 4.536 12 H 0.072 0.928 13 C 0.074 3.926 14 N -0.867 5.867 15 Si 0.919 3.081 16 H -0.277 1.277 17 H -0.282 1.282 18 H -0.272 1.272 19 N -0.705 5.705 20 C 0.610 3.390 21 O -0.504 6.504 22 C -0.049 4.049 23 N -0.316 5.316 24 O 0.346 5.654 25 N -0.356 5.356 26 C 0.062 3.938 27 C -0.076 4.076 28 H 0.050 0.950 29 H 0.052 0.948 30 H 0.063 0.937 31 H 0.082 0.918 32 H 0.069 0.931 33 H 0.075 0.925 34 H 0.087 0.913 35 H 0.398 0.602 36 H 0.090 0.910 37 H 0.089 0.911 38 H 0.269 0.731 39 H 0.411 0.589 40 H 0.093 0.907 41 H 0.088 0.912 42 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.857 -8.291 4.163 28.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.172 4.172 3 C 0.031 3.969 4 H 0.121 0.879 5 C -0.012 4.012 6 N -0.397 5.397 7 C 0.320 3.680 8 O -0.388 6.388 9 C -0.305 4.305 10 S 0.168 5.832 11 C -0.684 4.684 12 H 0.091 0.909 13 C -0.136 4.136 14 N -0.503 5.503 15 Si 0.745 3.255 16 H -0.202 1.202 17 H -0.207 1.207 18 H -0.197 1.197 19 N -0.358 5.358 20 C 0.393 3.607 21 O -0.377 6.377 22 C -0.214 4.214 23 N -0.035 5.035 24 O 0.120 5.880 25 N -0.082 5.082 26 C -0.104 4.104 27 C -0.134 4.134 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.082 0.918 31 H 0.100 0.900 32 H 0.088 0.912 33 H 0.093 0.907 34 H 0.105 0.895 35 H 0.232 0.768 36 H 0.108 0.892 37 H 0.108 0.892 38 H 0.079 0.921 39 H 0.247 0.753 40 H 0.112 0.888 41 H 0.107 0.893 42 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -25.432 -9.684 4.201 27.535 hybrid contribution -0.897 2.425 0.110 2.587 sum -26.328 -7.260 4.311 27.649 Atomic orbital electron populations 1.21804 0.94529 1.01078 1.02832 1.21916 0.97228 0.94695 1.03392 1.21517 0.94258 0.94585 0.86554 0.87903 1.21610 0.90858 0.84958 1.03803 1.46000 1.07960 1.08702 1.77016 1.20323 0.81242 0.91192 0.75290 1.90712 1.55358 1.46131 1.46569 1.23537 1.06971 0.95070 1.04911 1.85386 0.91811 1.11038 1.94963 1.22859 0.95456 0.92377 1.57731 0.90943 1.24993 0.95060 0.98986 0.94516 1.70011 0.99502 1.34600 1.46155 0.86167 0.77994 0.82969 0.78372 1.20239 1.20720 1.19692 1.45956 1.15687 1.56382 1.17793 1.16358 0.82508 0.78054 0.83822 1.90845 1.51014 1.58256 1.37584 1.26064 0.93188 1.05965 0.96207 1.75409 1.19689 1.08486 0.99931 1.85097 1.17522 1.49647 1.35758 1.75101 1.00221 1.18839 1.14006 1.26266 0.97565 0.95617 0.90906 1.20359 0.90509 1.04004 0.98485 0.93089 0.92923 0.91816 0.89992 0.91181 0.90667 0.89469 0.76814 0.89212 0.89243 0.92149 0.75275 0.88810 0.89330 0.87882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 8.51 37.16 0.32 -0.75 16 2 C -0.13 -0.88 5.61 -26.73 -0.15 -1.03 16 3 C 0.13 1.00 2.42 -67.93 -0.16 0.84 16 4 H 0.10 0.83 7.58 -51.93 -0.39 0.43 16 5 C 0.11 1.08 5.23 -4.04 -0.02 1.06 16 6 N -0.74 -8.93 5.39 -60.29 -0.32 -9.25 16 7 C 0.53 9.41 7.85 -10.98 -0.09 9.33 16 8 O -0.51 -11.10 15.86 5.56 0.09 -11.01 16 9 C -0.15 -3.04 6.16 36.00 0.22 -2.82 16 10 S -0.06 -1.57 20.57 -107.50 -2.21 -3.78 16 11 C -0.54 -15.17 9.50 30.94 0.29 -14.88 16 12 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 13 C 0.07 2.10 5.50 -17.43 -0.10 2.00 16 14 N -0.87 -26.02 13.22 55.49 0.73 -25.29 16 15 Si 0.92 21.34 29.55 -169.99 -5.02 16.31 16 16 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 17 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 18 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 19 N -0.71 -5.39 4.47 -54.62 -0.24 -5.63 16 20 C 0.61 5.35 6.41 -12.13 -0.08 5.27 16 21 O -0.50 -5.03 13.09 5.37 0.07 -4.96 16 22 C -0.05 -0.43 7.56 -80.06 -0.61 -1.04 16 23 N -0.32 -2.97 12.13 33.50 0.41 -2.56 16 24 O 0.35 3.23 11.65 27.27 0.32 3.55 16 25 N -0.36 -3.27 12.22 33.76 0.41 -2.86 16 26 C 0.06 0.51 7.79 -79.33 -0.62 -0.11 16 27 C -0.08 -0.41 10.22 36.00 0.37 -0.04 16 28 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 29 H 0.05 0.45 5.64 -51.93 -0.29 0.15 16 30 H 0.06 0.52 7.85 -51.93 -0.41 0.11 16 31 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.40 4.03 8.14 -40.82 -0.33 3.70 16 36 H 0.09 1.64 8.14 -51.91 -0.42 1.22 16 37 H 0.09 1.63 8.14 -51.91 -0.42 1.21 16 38 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 39 H 0.41 3.06 8.46 -40.82 -0.35 2.72 16 40 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.10 0.58 7.31 -51.93 -0.38 0.20 16 LS Contribution 376.60 15.07 5.68 5.68 Total: -1.00 -34.32 376.60 -6.22 -40.54 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: -5.50 Total: 1.41 kcal Atomic # 6 Polarization: -1.55 SS G_CDS: -0.62 Total: -2.16 kcal Atomic # 7 Polarization: -46.57 SS G_CDS: 0.98 Total: -45.59 kcal Atomic # 8 Polarization: -12.89 SS G_CDS: 0.48 Total: -12.41 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.31 kcal Atomic # 16 Polarization: -1.57 SS G_CDS: -2.21 Total: -3.78 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -34.32 -6.22 -40.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001285037920.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.754 kcal (2) G-P(sol) polarization free energy of solvation -34.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.541 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds