Wall clock time and date at job start Wed Apr 1 2020 01:47:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47021 * 2 1 4 4 H 1.09002 * 109.46901 * 305.00289 * 3 2 1 5 5 C 1.52998 * 109.47292 * 185.00123 * 3 2 1 6 6 N 1.46497 * 109.47174 * 185.00006 * 5 3 2 7 7 C 1.34783 * 119.99701 * 180.02562 * 6 5 3 8 8 O 1.21274 * 120.00162 * 359.97438 * 7 6 5 9 9 C 1.50698 * 119.99713 * 180.02562 * 7 6 5 10 10 S 1.80999 * 109.47092 * 179.97438 * 9 7 6 11 11 C 1.76200 * 99.99889 * 179.97438 * 10 9 7 12 12 H 1.08000 * 120.00431 * 0.02562 * 11 10 9 13 13 C 1.38802 * 119.99582 * 179.97438 * 11 10 9 14 14 N 1.31627 * 120.00397 * 0.02562 * 13 11 10 15 15 Si 1.86810 * 119.99656 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47017 * 90.00005 * 15 13 11 17 17 H 1.48502 * 109.46770 * 210.00202 * 15 13 11 18 18 H 1.48500 * 109.46853 * 329.99950 * 15 13 11 19 19 N 1.46496 * 109.47234 * 64.99798 * 3 2 1 20 20 C 1.34777 * 120.00258 * 275.00436 * 19 3 2 21 21 O 1.21498 * 120.00013 * 359.97438 * 20 19 3 22 22 C 1.48276 * 120.00029 * 180.02562 * 20 19 3 23 23 N 1.31611 * 128.71337 * 359.66848 * 22 20 19 24 24 O 1.20904 * 109.17866 * 179.86385 * 23 22 20 25 25 N 1.20835 * 115.90869 * 0.45736 * 24 23 22 26 26 C 1.30650 * 109.62097 * 359.72026 * 25 24 23 27 27 C 1.50698 * 128.64299 * 180.02562 * 26 25 24 28 28 H 1.09007 * 109.46942 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47425 * 299.99831 * 1 2 3 30 30 H 1.09004 * 109.47481 * 60.00160 * 1 2 3 31 31 H 1.09004 * 109.46916 * 240.00416 * 2 1 3 32 32 H 1.08993 * 109.47354 * 120.00295 * 2 1 3 33 33 H 1.09001 * 109.47146 * 304.99888 * 5 3 2 34 34 H 1.09006 * 109.46999 * 64.99987 * 5 3 2 35 35 H 0.96998 * 120.00251 * 0.02562 * 6 5 3 36 36 H 1.09007 * 109.47252 * 299.99643 * 9 7 6 37 37 H 1.09006 * 109.47240 * 59.99352 * 9 7 6 38 38 H 0.96997 * 119.99887 * 180.02562 * 14 13 11 39 39 H 0.96999 * 119.99694 * 94.99826 * 19 3 2 40 40 H 1.08999 * 109.46638 * 269.97631 * 27 26 25 41 41 H 1.08997 * 109.46922 * 29.96875 * 27 26 25 42 42 H 1.08998 * 109.47466 * 149.97167 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 3.5648 1.4444 -0.1257 6 7 4.0629 2.8168 -0.0060 7 6 5.3856 3.0631 -0.0869 8 8 6.1633 2.1485 -0.2584 9 6 5.8981 4.4748 0.0369 10 16 7.7019 4.4771 -0.1120 11 6 8.0213 6.2010 0.0637 12 1 7.2026 6.8895 0.2125 13 6 9.3252 6.6740 0.0118 14 7 10.3231 5.8349 -0.1691 15 14 9.6638 8.5016 0.1989 16 1 9.8678 8.8228 1.6343 17 1 10.8848 8.8596 -0.5669 18 1 8.5081 9.2749 -0.3222 19 7 1.6524 2.0975 1.2517 20 6 0.4350 2.6643 1.3669 21 8 -0.3408 2.6325 0.4324 22 6 0.0430 3.3278 2.6337 23 7 0.7374 3.4575 3.7441 24 8 0.0781 4.0636 4.5564 25 7 -1.0264 4.3968 4.1971 26 6 -1.2255 4.0021 2.9677 27 6 -2.4470 4.1896 2.1053 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5138 0.8899 33 1 3.9954 0.8312 0.6659 34 1 3.8498 1.0377 -1.0961 35 1 3.4409 3.5483 0.1316 36 1 5.4671 5.0886 -0.7542 37 1 5.6134 4.8810 1.0076 38 1 11.2342 6.1654 -0.2049 39 1 2.2719 2.1231 1.9977 40 1 -3.1229 3.3458 2.2443 41 1 -2.9541 5.1118 2.3891 42 1 -2.1477 4.2469 1.0588 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001285037920.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:47:08 Heat of formation + Delta-G solvation = 7.853184 kcal Electronic energy + Delta-G solvation = -26875.545688 eV Core-core repulsion = 22793.158829 eV Total energy + Delta-G solvation = -4082.386859 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.119 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -47.99272 -41.45351 -40.48747 -37.81782 -36.27051 -35.87818 -35.05023 -34.59155 -33.46275 -31.50288 -30.45172 -29.14759 -27.67109 -26.91672 -24.39819 -23.73756 -22.66783 -21.82000 -21.57855 -20.16722 -19.97859 -19.52720 -18.31223 -17.94647 -17.66779 -17.13392 -16.88607 -16.63587 -16.51434 -15.85701 -15.63553 -15.09963 -14.87744 -14.66398 -14.52851 -14.46999 -14.44206 -14.29395 -14.04156 -13.51515 -13.17729 -13.08564 -13.04106 -12.94507 -12.89841 -12.66149 -12.55516 -12.33221 -12.19813 -11.85835 -11.73610 -11.49642 -11.40024 -11.15306 -11.01830 -10.33118 -10.29217 -10.19295 -8.67211 -8.35801 -6.13487 -0.41647 0.21453 1.25245 1.41525 1.41660 1.46530 1.56306 1.58346 1.73186 2.18673 2.25844 2.27723 2.32215 2.74713 2.98468 3.30170 3.45136 3.56480 3.69330 3.86664 3.99111 4.05284 4.08475 4.26335 4.37591 4.47628 4.48927 4.59067 4.62977 4.70748 4.75384 4.91285 4.98188 5.08614 5.12828 5.28429 5.34952 5.40924 5.45675 6.09350 6.18717 6.38838 6.74470 7.05835 7.17462 7.30159 8.73311 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.011646 B = 0.002485 C = 0.002143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2403.771665 B =11263.062226 C =13063.143329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.130 4.130 3 C 0.147 3.853 4 H 0.104 0.896 5 C 0.113 3.887 6 N -0.715 5.715 7 C 0.538 3.462 8 O -0.558 6.558 9 C -0.133 4.133 10 S -0.146 6.146 11 C -0.547 4.547 12 H 0.081 0.919 13 C 0.014 3.986 14 N -0.910 5.910 15 Si 0.997 3.003 16 H -0.268 1.268 17 H -0.277 1.277 18 H -0.259 1.259 19 N -0.700 5.700 20 C 0.613 3.387 21 O -0.515 6.515 22 C -0.055 4.055 23 N -0.322 5.322 24 O 0.338 5.662 25 N -0.368 5.368 26 C 0.066 3.934 27 C -0.075 4.075 28 H 0.058 0.942 29 H 0.040 0.960 30 H 0.055 0.945 31 H 0.094 0.906 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.089 0.911 35 H 0.411 0.589 36 H 0.107 0.893 37 H 0.107 0.893 38 H 0.271 0.729 39 H 0.413 0.587 40 H 0.108 0.892 41 H 0.102 0.898 42 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.913 -7.477 4.175 30.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.169 4.169 3 C 0.043 3.957 4 H 0.122 0.878 5 C -0.010 4.010 6 N -0.369 5.369 7 C 0.323 3.677 8 O -0.436 6.436 9 C -0.284 4.284 10 S 0.081 5.919 11 C -0.695 4.695 12 H 0.099 0.901 13 C -0.191 4.191 14 N -0.547 5.547 15 Si 0.819 3.181 16 H -0.193 1.193 17 H -0.202 1.202 18 H -0.183 1.183 19 N -0.353 5.353 20 C 0.396 3.604 21 O -0.389 6.389 22 C -0.221 4.221 23 N -0.042 5.042 24 O 0.114 5.886 25 N -0.095 5.095 26 C -0.100 4.100 27 C -0.133 4.133 28 H 0.077 0.923 29 H 0.059 0.941 30 H 0.075 0.925 31 H 0.113 0.887 32 H 0.093 0.907 33 H 0.095 0.905 34 H 0.107 0.893 35 H 0.247 0.753 36 H 0.125 0.875 37 H 0.125 0.875 38 H 0.080 0.920 39 H 0.250 0.750 40 H 0.127 0.873 41 H 0.121 0.879 42 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -27.537 -8.873 4.231 29.239 hybrid contribution -0.407 2.090 0.105 2.132 sum -27.945 -6.783 4.336 29.081 Atomic orbital electron populations 1.21745 0.94866 1.01333 1.01858 1.21907 0.96731 0.93928 1.04315 1.21419 0.92440 0.95390 0.86438 0.87839 1.21766 0.92135 0.83104 1.04043 1.45720 1.06075 1.10483 1.74669 1.19950 0.82669 0.89716 0.75334 1.90705 1.56899 1.46886 1.49121 1.23388 1.01237 0.97268 1.06508 1.85522 0.99168 1.11825 1.95344 1.23195 0.96123 0.92602 1.57599 0.90096 1.26104 0.94744 1.04375 0.93837 1.70170 1.00032 1.37125 1.47332 0.84977 0.78173 0.76321 0.78663 1.19330 1.20236 1.18304 1.45933 1.15453 1.56057 1.17887 1.16312 0.82567 0.77922 0.83586 1.90844 1.51370 1.58791 1.37914 1.26181 0.93604 1.06160 0.96148 1.75383 1.20006 1.08665 1.00178 1.85087 1.17708 1.49927 1.35885 1.75099 1.00265 1.19528 1.14618 1.26741 0.98012 0.94539 0.90726 1.20511 0.89675 1.05326 0.97769 0.92257 0.94069 0.92540 0.88726 0.90677 0.90538 0.89257 0.75280 0.87477 0.87475 0.91957 0.75017 0.87331 0.87949 0.87989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 8.51 71.98 0.61 -1.20 16 2 C -0.13 -1.42 5.61 30.59 0.17 -1.25 16 3 C 0.15 1.88 2.42 44.99 0.11 1.98 16 4 H 0.10 1.41 7.58 -2.39 -0.02 1.39 16 5 C 0.11 1.96 5.23 86.38 0.45 2.41 16 6 N -0.72 -15.85 5.39 -463.06 -2.50 -18.35 16 7 C 0.54 18.49 7.85 87.66 0.69 19.18 16 8 O -0.56 -24.23 15.86 -3.01 -0.05 -24.27 16 9 C -0.13 -5.11 6.16 71.24 0.44 -4.67 16 10 S -0.15 -7.96 20.57 -56.49 -1.16 -9.12 16 11 C -0.55 -31.06 9.50 67.95 0.65 -30.41 16 12 H 0.08 4.28 7.80 -2.91 -0.02 4.26 16 13 C 0.01 0.81 5.50 84.86 0.47 1.28 16 14 N -0.91 -55.58 13.22 21.65 0.29 -55.29 16 15 Si 1.00 43.45 29.55 68.60 2.03 45.47 16 16 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 17 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 18 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 19 N -0.70 -9.41 4.47 -445.01 -1.99 -11.39 16 20 C 0.61 9.76 6.41 86.91 0.56 10.31 16 21 O -0.52 -9.39 13.09 -3.71 -0.05 -9.44 16 22 C -0.06 -0.92 7.56 44.29 0.34 -0.58 16 23 N -0.32 -5.78 12.13 -52.02 -0.63 -6.41 16 24 O 0.34 6.11 11.65 140.85 1.64 7.75 16 25 N -0.37 -6.41 12.22 -51.78 -0.63 -7.04 16 26 C 0.07 0.99 7.79 45.18 0.35 1.34 16 27 C -0.08 -0.66 10.22 71.24 0.73 0.06 16 28 H 0.06 0.66 8.14 -2.38 -0.02 0.65 16 29 H 0.04 0.63 5.64 -2.39 -0.01 0.61 16 30 H 0.06 0.81 7.85 -2.38 -0.02 0.80 16 31 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.09 1.61 8.14 -2.38 -0.02 1.59 16 35 H 0.41 7.26 8.14 -92.71 -0.75 6.51 16 36 H 0.11 3.75 8.14 -2.39 -0.02 3.73 16 37 H 0.11 3.74 8.14 -2.39 -0.02 3.72 16 38 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 39 H 0.41 5.42 8.46 -92.71 -0.78 4.63 16 40 H 0.11 0.66 8.14 -2.39 -0.02 0.64 16 41 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 42 H 0.10 0.96 7.31 -2.39 -0.02 0.94 16 Total: -1.00 -75.56 376.60 2.05 -73.51 By element: Atomic # 1 Polarization: 16.58 SS G_CDS: -0.45 Total: 16.13 kcal Atomic # 6 Polarization: -7.10 SS G_CDS: 5.56 Total: -1.54 kcal Atomic # 7 Polarization: -93.03 SS G_CDS: -5.46 Total: -98.49 kcal Atomic # 8 Polarization: -27.50 SS G_CDS: 1.54 Total: -25.95 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.47 kcal Atomic # 16 Polarization: -7.96 SS G_CDS: -1.16 Total: -9.12 kcal Total: -75.56 2.05 -73.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001285037920.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.362 kcal (2) G-P(sol) polarization free energy of solvation -75.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.509 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds