Wall clock time and date at job start Wed Apr 1 2020 01:20:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.29957 * 125.30146 * 2 1 4 4 O 1.41880 * 107.41284 * 179.97438 * 3 2 1 5 5 N 1.41877 * 106.38900 * 359.78737 * 4 3 2 6 6 C 1.29958 * 107.41285 * 0.36149 * 5 4 3 7 7 C 1.50694 * 125.30277 * 179.89102 * 6 5 4 8 8 C 1.50698 * 109.47276 * 269.69537 * 7 6 5 9 9 O 1.21274 * 120.00124 * 0.02562 * 8 7 6 10 10 N 1.34783 * 119.99713 * 179.97438 * 8 7 6 11 11 C 1.46497 * 119.99701 * 180.02562 * 10 8 7 12 12 C 1.52998 * 109.47174 * 180.02562 * 11 10 8 13 13 H 1.09002 * 109.47283 * 65.00075 * 12 11 10 14 14 C 1.52998 * 109.47292 * 185.00006 * 12 11 10 15 15 N 1.46496 * 109.47246 * 305.00324 * 12 11 10 16 16 C 1.34777 * 120.00258 * 155.00083 * 15 12 11 17 17 O 1.21279 * 120.00166 * 359.97438 * 16 15 12 18 18 C 1.50706 * 119.99762 * 179.97438 * 16 15 12 19 19 S 1.81003 * 109.46853 * 179.97438 * 18 16 15 20 20 C 1.76196 * 99.99846 * 179.97438 * 19 18 16 21 21 H 1.07998 * 120.00030 * 359.97438 * 20 19 18 22 22 C 1.38802 * 119.99637 * 180.02562 * 20 19 18 23 23 N 1.31628 * 120.00513 * 0.02562 * 22 20 19 24 24 Si 1.86806 * 119.99570 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.47213 * 0.02562 * 24 22 20 26 26 H 1.48506 * 109.46950 * 120.00258 * 24 22 20 27 27 H 1.48503 * 109.47177 * 240.00017 * 24 22 20 28 28 H 1.09004 * 109.47405 * 269.99391 * 1 2 3 29 29 H 1.09003 * 109.47376 * 29.99855 * 1 2 3 30 30 H 1.09006 * 109.46792 * 149.99992 * 1 2 3 31 31 H 1.09007 * 109.46733 * 149.69521 * 7 6 5 32 32 H 1.09006 * 109.47471 * 29.69990 * 7 6 5 33 33 H 0.96998 * 120.00048 * 0.02562 * 10 8 7 34 34 H 1.09001 * 109.46987 * 60.00085 * 11 10 8 35 35 H 1.09006 * 109.47173 * 299.99977 * 11 10 8 36 36 H 1.09002 * 109.47121 * 299.99938 * 14 12 11 37 37 H 1.08994 * 109.47090 * 60.00118 * 14 12 11 38 38 H 1.09001 * 109.47093 * 180.02562 * 14 12 11 39 39 H 0.96999 * 119.99694 * 334.99473 * 15 12 11 40 40 H 1.09000 * 109.47318 * 299.99141 * 18 16 15 41 41 H 1.09000 * 109.47161 * 59.99772 * 18 16 15 42 42 H 0.96995 * 120.00407 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2579 1.0606 0.0000 4 8 3.6081 0.6248 0.0006 5 7 3.5710 -0.7935 0.0060 6 6 2.3213 -1.1498 0.0005 7 6 1.8210 -2.5713 0.0010 8 6 1.6542 -3.0457 -1.4196 9 8 1.9163 -2.3028 -2.3417 10 7 1.2148 -4.2960 -1.6653 11 6 1.0532 -4.7573 -3.0463 12 6 0.5452 -6.2005 -3.0458 13 1 -0.4542 -6.2337 -2.6119 14 6 0.4950 -6.7241 -4.4825 15 7 1.4498 -7.0364 -2.2527 16 6 0.9954 -8.1717 -1.6861 17 8 -0.1626 -8.5011 -1.8323 18 6 1.9263 -9.0318 -0.8707 19 16 1.0259 -10.4733 -0.2483 20 6 2.3159 -11.2792 0.6411 21 1 3.3045 -10.8455 0.6699 22 6 2.0616 -12.4721 1.3037 23 7 0.8571 -13.0015 1.2673 24 14 3.4295 -13.3269 2.2460 25 1 4.6797 -12.5336 2.1321 26 1 3.0469 -13.4444 3.6761 27 1 3.6491 -14.6819 1.6794 28 1 -0.3634 -0.0001 1.0277 29 1 -0.3634 0.8900 -0.5138 30 1 -0.3633 -0.8900 -0.5139 31 1 0.8608 -2.6183 0.5149 32 1 2.5398 -3.2094 0.5152 33 1 1.0056 -4.8902 -0.9278 34 1 2.0135 -4.7099 -3.5599 35 1 0.3342 -4.1196 -3.5607 36 1 -0.1782 -6.1021 -5.0726 37 1 1.4943 -6.6909 -4.9164 38 1 0.1326 -7.7521 -4.4821 39 1 2.3759 -6.7728 -2.1355 40 1 2.7557 -9.3631 -1.4956 41 1 2.3123 -8.4543 -0.0307 42 1 0.6794 -13.8349 1.7307 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001298538155.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:20:03 Heat of formation + Delta-G solvation = 9.035053 kcal Electronic energy + Delta-G solvation = -26236.934790 eV Core-core repulsion = 22154.599180 eV Total energy + Delta-G solvation = -4082.335609 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.119 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.96436 -40.31338 -39.38943 -36.59344 -35.00137 -34.08595 -33.82049 -32.49939 -31.68913 -30.13127 -29.19530 -28.68902 -26.51398 -25.55565 -23.14030 -21.99583 -21.57946 -20.65237 -20.48661 -18.17866 -17.72032 -17.46963 -16.76834 -16.67695 -16.30625 -16.06487 -15.60012 -15.06232 -14.86937 -14.81063 -14.71097 -14.27640 -14.19923 -13.91199 -13.58250 -13.43259 -13.30269 -13.14636 -13.03325 -12.65385 -12.64124 -12.18061 -12.15507 -12.08390 -11.95428 -11.37960 -11.28869 -11.12509 -11.09336 -11.04054 -10.81643 -10.44507 -9.88077 -9.67083 -9.51342 -9.17597 -9.11563 -8.32613 -6.58647 -6.29031 -4.00186 0.13089 1.46545 2.03026 2.18774 2.57293 2.75533 2.88672 2.94431 3.16625 3.22966 3.27018 3.37684 3.57870 3.98083 4.13414 4.20983 4.30513 4.30835 4.57910 4.68423 4.77459 4.80645 4.86970 4.97299 5.03014 5.06719 5.13909 5.21720 5.32144 5.34419 5.44454 5.55324 5.76623 5.80745 5.82248 6.03160 6.06320 6.44008 6.50530 6.90066 7.50619 7.53481 7.61695 8.28266 8.43764 9.16883 10.78340 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.013102 B = 0.002074 C = 0.001878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2136.596356 B =13499.672444 C =14902.417729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.087 3.913 3 N -0.278 5.278 4 O 0.029 5.971 5 N -0.260 5.260 6 C 0.095 3.905 7 C -0.083 4.083 8 C 0.520 3.480 9 O -0.531 6.531 10 N -0.723 5.723 11 C 0.113 3.887 12 C 0.132 3.868 13 H 0.097 0.903 14 C -0.162 4.162 15 N -0.739 5.739 16 C 0.534 3.466 17 O -0.513 6.513 18 C -0.155 4.155 19 S -0.059 6.059 20 C -0.536 4.536 21 H 0.073 0.927 22 C 0.074 3.926 23 N -0.867 5.867 24 Si 0.918 3.082 25 H -0.272 1.272 26 H -0.280 1.280 27 H -0.280 1.280 28 H 0.099 0.901 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.132 0.868 32 H 0.129 0.871 33 H 0.409 0.591 34 H 0.076 0.924 35 H 0.085 0.915 36 H 0.066 0.934 37 H 0.059 0.941 38 H 0.072 0.928 39 H 0.399 0.601 40 H 0.090 0.910 41 H 0.089 0.911 42 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.600 22.546 -4.541 23.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.096 4.096 3 N -0.023 5.023 4 O -0.113 6.113 5 N -0.002 5.002 6 C -0.088 4.088 7 C -0.124 4.124 8 C 0.304 3.696 9 O -0.407 6.407 10 N -0.376 5.376 11 C -0.011 4.011 12 C 0.027 3.973 13 H 0.115 0.885 14 C -0.221 4.221 15 N -0.394 5.394 16 C 0.320 3.680 17 O -0.387 6.387 18 C -0.305 4.305 19 S 0.167 5.833 20 C -0.684 4.684 21 H 0.091 0.909 22 C -0.136 4.136 23 N -0.502 5.502 24 Si 0.745 3.255 25 H -0.196 1.196 26 H -0.205 1.205 27 H -0.205 1.205 28 H 0.117 0.883 29 H 0.111 0.889 30 H 0.111 0.889 31 H 0.150 0.850 32 H 0.148 0.852 33 H 0.244 0.756 34 H 0.095 0.905 35 H 0.103 0.897 36 H 0.085 0.915 37 H 0.078 0.922 38 H 0.091 0.909 39 H 0.233 0.767 40 H 0.108 0.892 41 H 0.108 0.892 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.274 23.222 -5.401 23.950 hybrid contribution 2.084 -0.852 1.129 2.519 sum -0.189 22.370 -4.272 22.775 Atomic orbital electron populations 1.20594 0.84158 1.05574 1.04831 1.24522 1.00336 0.88788 0.95950 1.79930 0.89066 1.19566 1.13775 1.93403 1.20193 1.13193 1.84519 1.79928 1.17334 0.91508 1.11443 1.23733 0.90094 0.97609 0.97400 1.20363 1.05608 0.89400 0.97062 1.20045 0.77289 0.82019 0.90224 1.90792 1.49367 1.54626 1.45906 1.45909 1.67753 1.14164 1.09730 1.21775 1.02623 0.94037 0.82677 1.21142 0.95514 0.87582 0.93098 0.88517 1.22121 1.02429 1.02875 0.94687 1.46178 1.14115 1.24770 1.54381 1.20351 0.88702 0.80307 0.78650 1.90716 1.18189 1.70283 1.59479 1.23547 1.02496 1.02822 1.01684 1.85399 1.15446 1.17781 1.64658 1.22895 0.97672 1.10687 1.37162 0.90868 1.24995 0.96369 0.96182 0.96022 1.70015 1.19950 1.19228 1.41032 0.86121 0.80948 0.79203 0.79254 1.19610 1.20536 1.20537 0.88281 0.88941 0.88896 0.84984 0.85250 0.75559 0.90536 0.89677 0.91468 0.92157 0.90941 0.76697 0.89190 0.89222 0.92181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.35 10.05 36.00 0.36 0.01 16 2 C 0.09 0.71 7.19 -82.38 -0.59 0.12 16 3 N -0.28 -3.09 12.98 33.74 0.44 -2.65 16 4 O 0.03 0.37 13.71 12.02 0.16 0.53 16 5 N -0.26 -3.04 12.98 33.74 0.44 -2.61 16 6 C 0.10 0.83 5.68 -82.38 -0.47 0.36 16 7 C -0.08 -0.42 5.87 -29.04 -0.17 -0.59 16 8 C 0.52 3.95 7.82 -10.98 -0.09 3.86 16 9 O -0.53 -6.31 16.03 5.56 0.09 -6.22 16 10 N -0.72 -4.41 5.39 -60.29 -0.32 -4.73 16 11 C 0.11 0.77 5.23 -4.04 -0.02 0.75 16 12 C 0.13 1.12 2.73 -67.93 -0.19 0.93 16 13 H 0.10 0.95 7.58 -51.93 -0.39 0.56 16 14 C -0.16 -1.39 9.48 37.16 0.35 -1.04 16 15 N -0.74 -7.45 4.52 -53.81 -0.24 -7.70 16 16 C 0.53 8.33 7.81 -10.98 -0.09 8.24 16 17 O -0.51 -10.09 15.52 5.56 0.09 -10.00 16 18 C -0.15 -2.77 6.16 36.01 0.22 -2.55 16 19 S -0.06 -1.51 20.57 -107.50 -2.21 -3.72 16 20 C -0.54 -14.58 9.50 30.94 0.29 -14.29 16 21 H 0.07 1.89 7.80 -52.49 -0.41 1.48 16 22 C 0.07 2.03 5.49 -17.43 -0.10 1.93 16 23 N -0.87 -25.27 13.22 55.49 0.73 -24.54 16 24 Si 0.92 20.71 29.55 -169.99 -5.02 15.69 16 25 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 26 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 27 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 28 H 0.10 0.16 8.14 -51.93 -0.42 -0.26 16 29 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.09 0.23 7.78 -51.93 -0.40 -0.17 16 31 H 0.13 0.16 7.78 -51.93 -0.40 -0.24 16 32 H 0.13 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.41 2.02 8.14 -40.82 -0.33 1.68 16 34 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.40 3.17 8.60 -40.82 -0.35 2.81 16 40 H 0.09 1.52 8.14 -51.92 -0.42 1.10 16 41 H 0.09 1.44 8.14 -51.92 -0.42 1.02 16 42 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 386.23 15.07 5.82 5.82 Total: -1.00 -37.80 386.23 -6.16 -43.96 By element: Atomic # 1 Polarization: 4.09 SS G_CDS: -5.66 Total: -1.57 kcal Atomic # 6 Polarization: -1.79 SS G_CDS: -0.47 Total: -2.26 kcal Atomic # 7 Polarization: -43.27 SS G_CDS: 1.04 Total: -42.23 kcal Atomic # 8 Polarization: -16.03 SS G_CDS: 0.34 Total: -15.69 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Atomic # 16 Polarization: -1.51 SS G_CDS: -2.21 Total: -3.72 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -37.80 -6.16 -43.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001298538155.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.994 kcal (2) G-P(sol) polarization free energy of solvation -37.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.959 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds