Wall clock time and date at job start Wed Apr 1 2020 01:20:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.29957 * 125.30146 * 2 1 4 4 O 1.41880 * 107.41284 * 179.97438 * 3 2 1 5 5 N 1.41877 * 106.38900 * 359.78737 * 4 3 2 6 6 C 1.29958 * 107.41285 * 0.36149 * 5 4 3 7 7 C 1.50694 * 125.30277 * 179.89102 * 6 5 4 8 8 C 1.50698 * 109.47276 * 269.69537 * 7 6 5 9 9 O 1.21274 * 120.00124 * 0.02562 * 8 7 6 10 10 N 1.34783 * 119.99713 * 179.97438 * 8 7 6 11 11 C 1.46497 * 119.99701 * 180.02562 * 10 8 7 12 12 C 1.52998 * 109.47174 * 180.02562 * 11 10 8 13 13 H 1.09002 * 109.47283 * 65.00075 * 12 11 10 14 14 C 1.52998 * 109.47292 * 185.00006 * 12 11 10 15 15 N 1.46496 * 109.47246 * 305.00324 * 12 11 10 16 16 C 1.34777 * 120.00258 * 155.00083 * 15 12 11 17 17 O 1.21279 * 120.00166 * 359.97438 * 16 15 12 18 18 C 1.50706 * 119.99762 * 179.97438 * 16 15 12 19 19 S 1.81003 * 109.46853 * 179.97438 * 18 16 15 20 20 C 1.76196 * 99.99846 * 179.97438 * 19 18 16 21 21 H 1.07998 * 120.00030 * 359.97438 * 20 19 18 22 22 C 1.38802 * 119.99637 * 180.02562 * 20 19 18 23 23 N 1.31628 * 120.00513 * 0.02562 * 22 20 19 24 24 Si 1.86806 * 119.99570 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.47213 * 0.02562 * 24 22 20 26 26 H 1.48506 * 109.46950 * 120.00258 * 24 22 20 27 27 H 1.48503 * 109.47177 * 240.00017 * 24 22 20 28 28 H 1.09004 * 109.47405 * 269.99391 * 1 2 3 29 29 H 1.09003 * 109.47376 * 29.99855 * 1 2 3 30 30 H 1.09006 * 109.46792 * 149.99992 * 1 2 3 31 31 H 1.09007 * 109.46733 * 149.69521 * 7 6 5 32 32 H 1.09006 * 109.47471 * 29.69990 * 7 6 5 33 33 H 0.96998 * 120.00048 * 0.02562 * 10 8 7 34 34 H 1.09001 * 109.46987 * 60.00085 * 11 10 8 35 35 H 1.09006 * 109.47173 * 299.99977 * 11 10 8 36 36 H 1.09002 * 109.47121 * 299.99938 * 14 12 11 37 37 H 1.08994 * 109.47090 * 60.00118 * 14 12 11 38 38 H 1.09001 * 109.47093 * 180.02562 * 14 12 11 39 39 H 0.96999 * 119.99694 * 334.99473 * 15 12 11 40 40 H 1.09000 * 109.47318 * 299.99141 * 18 16 15 41 41 H 1.09000 * 109.47161 * 59.99772 * 18 16 15 42 42 H 0.96995 * 120.00407 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2579 1.0606 0.0000 4 8 3.6081 0.6248 0.0006 5 7 3.5710 -0.7935 0.0060 6 6 2.3213 -1.1498 0.0005 7 6 1.8210 -2.5713 0.0010 8 6 1.6542 -3.0457 -1.4196 9 8 1.9163 -2.3028 -2.3417 10 7 1.2148 -4.2960 -1.6653 11 6 1.0532 -4.7573 -3.0463 12 6 0.5452 -6.2005 -3.0458 13 1 -0.4542 -6.2337 -2.6119 14 6 0.4950 -6.7241 -4.4825 15 7 1.4498 -7.0364 -2.2527 16 6 0.9954 -8.1717 -1.6861 17 8 -0.1626 -8.5011 -1.8323 18 6 1.9263 -9.0318 -0.8707 19 16 1.0259 -10.4733 -0.2483 20 6 2.3159 -11.2792 0.6411 21 1 3.3045 -10.8455 0.6699 22 6 2.0616 -12.4721 1.3037 23 7 0.8571 -13.0015 1.2673 24 14 3.4295 -13.3269 2.2460 25 1 4.6797 -12.5336 2.1321 26 1 3.0469 -13.4444 3.6761 27 1 3.6491 -14.6819 1.6794 28 1 -0.3634 -0.0001 1.0277 29 1 -0.3634 0.8900 -0.5138 30 1 -0.3633 -0.8900 -0.5139 31 1 0.8608 -2.6183 0.5149 32 1 2.5398 -3.2094 0.5152 33 1 1.0056 -4.8902 -0.9278 34 1 2.0135 -4.7099 -3.5599 35 1 0.3342 -4.1196 -3.5607 36 1 -0.1782 -6.1021 -5.0726 37 1 1.4943 -6.6909 -4.9164 38 1 0.1326 -7.7521 -4.4821 39 1 2.3759 -6.7728 -2.1355 40 1 2.7557 -9.3631 -1.4956 41 1 2.3123 -8.4543 -0.0307 42 1 0.6794 -13.8349 1.7307 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001298538155.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:20:02 Heat of formation + Delta-G solvation = -21.370475 kcal Electronic energy + Delta-G solvation = -26238.253272 eV Core-core repulsion = 22154.599180 eV Total energy + Delta-G solvation = -4083.654092 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.119 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.63703 -41.09413 -40.40900 -37.48746 -35.65216 -34.87477 -34.55774 -34.48063 -32.69771 -30.78176 -29.93510 -29.63818 -27.62982 -27.14349 -23.80628 -22.85315 -22.18563 -21.57902 -21.23457 -19.84969 -18.55857 -18.08449 -17.91070 -17.46069 -17.04274 -16.86072 -16.81037 -16.42012 -16.31284 -15.86345 -15.39094 -15.29485 -14.88496 -14.71921 -14.55593 -14.24842 -14.09592 -13.98542 -13.88064 -13.65110 -13.26392 -13.13481 -13.11418 -12.95080 -12.90322 -12.87411 -12.61579 -12.55693 -12.14494 -12.02505 -11.68078 -11.67782 -11.13901 -11.10692 -10.89891 -10.22709 -10.21254 -10.14256 -8.61855 -8.32940 -6.09112 -0.57235 0.86281 1.30175 1.42199 1.45696 1.47425 1.49874 1.59900 1.66407 1.97471 2.14529 2.27889 2.34268 2.79489 3.01679 3.35121 3.45431 3.59829 3.76117 3.90573 4.02602 4.09226 4.15430 4.28739 4.36462 4.38501 4.50310 4.57930 4.61197 4.63228 4.71588 4.74963 4.77849 5.03793 5.08966 5.22514 5.36823 5.45090 5.51505 5.80779 6.22319 6.38176 6.51998 7.08144 7.09597 7.28598 8.76051 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.013102 B = 0.002074 C = 0.001878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2136.596356 B =13499.672444 C =14902.417729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.098 3.902 3 N -0.309 5.309 4 O -0.019 6.019 5 N -0.293 5.293 6 C 0.105 3.895 7 C -0.081 4.081 8 C 0.525 3.475 9 O -0.577 6.577 10 N -0.712 5.712 11 C 0.122 3.878 12 C 0.138 3.862 13 H 0.088 0.912 14 C -0.161 4.161 15 N -0.711 5.711 16 C 0.541 3.459 17 O -0.558 6.558 18 C -0.133 4.133 19 S -0.147 6.147 20 C -0.544 4.544 21 H 0.082 0.918 22 C 0.014 3.986 23 N -0.910 5.910 24 Si 0.994 3.006 25 H -0.258 1.258 26 H -0.274 1.274 27 H -0.277 1.277 28 H 0.129 0.871 29 H 0.094 0.906 30 H 0.113 0.887 31 H 0.179 0.821 32 H 0.149 0.851 33 H 0.418 0.582 34 H 0.078 0.922 35 H 0.094 0.906 36 H 0.087 0.913 37 H 0.070 0.930 38 H 0.041 0.959 39 H 0.414 0.586 40 H 0.104 0.896 41 H 0.114 0.886 42 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.277 23.024 -4.074 23.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.085 4.085 3 N -0.059 5.059 4 O -0.152 6.152 5 N -0.039 5.039 6 C -0.079 4.079 7 C -0.121 4.121 8 C 0.310 3.690 9 O -0.457 6.457 10 N -0.364 5.364 11 C -0.002 4.002 12 C 0.033 3.967 13 H 0.106 0.894 14 C -0.220 4.220 15 N -0.366 5.366 16 C 0.327 3.673 17 O -0.436 6.436 18 C -0.284 4.284 19 S 0.080 5.920 20 C -0.692 4.692 21 H 0.100 0.900 22 C -0.191 4.191 23 N -0.547 5.547 24 Si 0.816 3.184 25 H -0.181 1.181 26 H -0.200 1.200 27 H -0.203 1.203 28 H 0.147 0.853 29 H 0.112 0.888 30 H 0.131 0.869 31 H 0.197 0.803 32 H 0.167 0.833 33 H 0.255 0.745 34 H 0.096 0.904 35 H 0.112 0.888 36 H 0.106 0.894 37 H 0.089 0.911 38 H 0.060 0.940 39 H 0.251 0.749 40 H 0.122 0.878 41 H 0.132 0.868 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.881 23.751 -4.937 24.332 hybrid contribution 1.892 -0.950 0.885 2.295 sum 0.011 22.801 -4.052 23.158 Atomic orbital electron populations 1.20904 0.80732 1.06650 1.06954 1.25305 1.02167 0.87905 0.93115 1.79897 0.88687 1.21015 1.16272 1.93365 1.21721 1.14067 1.86058 1.79870 1.19321 0.91094 1.13586 1.24385 0.89318 0.99389 0.94822 1.20644 1.08425 0.87136 0.95910 1.20345 0.76261 0.81732 0.90640 1.90794 1.51521 1.55870 1.47495 1.45816 1.66975 1.13906 1.09752 1.21654 1.02837 0.92496 0.83226 1.21199 0.94718 0.88153 0.92610 0.89411 1.22097 1.03459 1.01396 0.95012 1.45881 1.15100 1.22875 1.52766 1.19928 0.87523 0.81240 0.78617 1.90714 1.19881 1.71662 1.61295 1.23403 1.02094 0.99980 1.02927 1.85543 1.18443 1.22456 1.65581 1.23232 0.97990 1.11011 1.36936 0.90014 1.26060 0.98899 0.97048 0.97062 1.70171 1.22344 1.19834 1.42335 0.84970 0.77935 0.77856 0.77600 1.18120 1.19979 1.20252 0.85334 0.88765 0.86876 0.80339 0.83304 0.74512 0.90407 0.88796 0.89425 0.91116 0.93978 0.74875 0.87793 0.86754 0.92073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.41 10.05 71.23 0.72 0.31 16 2 C 0.10 1.46 7.19 43.49 0.31 1.77 16 3 N -0.31 -6.98 12.98 -47.16 -0.61 -7.59 16 4 O -0.02 -0.52 13.71 70.16 0.96 0.45 16 5 N -0.29 -6.89 12.98 -47.16 -0.61 -7.51 16 6 C 0.11 1.65 5.68 43.49 0.25 1.89 16 7 C -0.08 -0.51 5.87 29.10 0.17 -0.34 16 8 C 0.52 6.32 7.82 87.66 0.69 7.01 16 9 O -0.58 -12.60 16.03 -3.01 -0.05 -12.65 16 10 N -0.71 -6.14 5.39 -463.06 -2.50 -8.64 16 11 C 0.12 1.28 5.23 86.38 0.45 1.73 16 12 C 0.14 2.00 2.73 44.99 0.12 2.12 16 13 H 0.09 1.54 7.58 -2.39 -0.02 1.52 16 14 C -0.16 -2.46 9.48 71.98 0.68 -1.77 16 15 N -0.71 -12.44 4.52 -442.54 -2.00 -14.44 16 16 C 0.54 16.06 7.81 87.66 0.68 16.74 16 17 O -0.56 -21.86 15.52 -3.03 -0.05 -21.91 16 18 C -0.13 -4.53 6.16 71.24 0.44 -4.09 16 19 S -0.15 -7.57 20.57 -56.49 -1.16 -8.73 16 20 C -0.54 -29.43 9.50 67.96 0.65 -28.78 16 21 H 0.08 4.11 7.80 -2.91 -0.02 4.09 16 22 C 0.01 0.78 5.49 84.86 0.47 1.24 16 23 N -0.91 -53.91 13.22 21.65 0.29 -53.62 16 24 Si 0.99 42.02 29.55 68.60 2.03 44.05 16 25 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16 26 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 27 H -0.28 -11.49 7.11 99.48 0.71 -10.78 16 28 H 0.13 -0.13 8.14 -2.38 -0.02 -0.14 16 29 H 0.09 0.44 8.14 -2.39 -0.02 0.43 16 30 H 0.11 0.07 7.78 -2.38 -0.02 0.05 16 31 H 0.18 -0.54 7.78 -2.38 -0.02 -0.56 16 32 H 0.15 0.47 8.14 -2.38 -0.02 0.45 16 33 H 0.42 2.41 8.14 -92.71 -0.75 1.65 16 34 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.09 0.94 8.14 -2.38 -0.02 0.92 16 36 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 39 H 0.41 5.05 8.60 -92.71 -0.80 4.25 16 40 H 0.10 3.28 8.14 -2.39 -0.02 3.26 16 41 H 0.11 3.35 8.14 -2.40 -0.02 3.33 16 42 H 0.27 14.87 8.31 -92.71 -0.77 14.10 16 Total: -1.00 -88.03 386.23 1.45 -86.58 By element: Atomic # 1 Polarization: 6.67 SS G_CDS: -0.47 Total: 6.19 kcal Atomic # 6 Polarization: -7.80 SS G_CDS: 5.62 Total: -2.18 kcal Atomic # 7 Polarization: -86.36 SS G_CDS: -5.43 Total: -91.80 kcal Atomic # 8 Polarization: -34.98 SS G_CDS: 0.87 Total: -34.11 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 2.03 Total: 44.05 kcal Atomic # 16 Polarization: -7.57 SS G_CDS: -1.16 Total: -8.73 kcal Total: -88.03 1.45 -86.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001298538155.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.208 kcal (2) G-P(sol) polarization free energy of solvation -88.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds