Wall clock time and date at job start Wed Apr 1 2020 01:20:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.29958 * 125.30537 * 2 1 4 4 O 1.41877 * 107.41094 * 179.97438 * 3 2 1 5 5 N 1.41874 * 106.39116 * 359.78119 * 4 3 2 6 6 C 1.29950 * 107.41260 * 0.36838 * 5 4 3 7 7 C 1.50706 * 125.30578 * 179.89173 * 6 5 4 8 8 C 1.50703 * 109.47001 * 269.69290 * 7 6 5 9 9 O 1.21281 * 119.99990 * 359.97438 * 8 7 6 10 10 N 1.34772 * 120.00069 * 179.97438 * 8 7 6 11 11 C 1.46496 * 120.00214 * 180.02562 * 10 8 7 12 12 H 1.08995 * 109.47079 * 324.99818 * 11 10 8 13 13 C 1.52997 * 109.47139 * 85.00355 * 11 10 8 14 14 C 1.53003 * 109.47321 * 205.00102 * 11 10 8 15 15 N 1.46499 * 109.46907 * 54.99680 * 14 11 10 16 16 C 1.34773 * 119.99808 * 180.02562 * 15 14 11 17 17 O 1.21286 * 120.00441 * 359.97438 * 16 15 14 18 18 C 1.50707 * 120.00162 * 180.02562 * 16 15 14 19 19 S 1.80995 * 109.47303 * 179.97438 * 18 16 15 20 20 C 1.76194 * 99.99946 * 179.97438 * 19 18 16 21 21 H 1.07998 * 120.00342 * 0.02562 * 20 19 18 22 22 C 1.38805 * 119.99973 * 180.02562 * 20 19 18 23 23 N 1.31629 * 119.99952 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 119.99963 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.47209 * 359.97438 * 24 22 20 26 26 H 1.48506 * 109.47287 * 119.99667 * 24 22 20 27 27 H 1.48503 * 109.47241 * 240.00039 * 24 22 20 28 28 H 1.08998 * 109.47081 * 270.00327 * 1 2 3 29 29 H 1.09007 * 109.46853 * 30.00311 * 1 2 3 30 30 H 1.08993 * 109.46958 * 149.99675 * 1 2 3 31 31 H 1.09000 * 109.46646 * 29.68748 * 7 6 5 32 32 H 1.09000 * 109.47248 * 149.69466 * 7 6 5 33 33 H 0.97000 * 119.99813 * 0.02562 * 10 8 7 34 34 H 1.08999 * 109.47317 * 180.02562 * 13 11 10 35 35 H 1.09002 * 109.46974 * 299.99457 * 13 11 10 36 36 H 1.08995 * 109.47573 * 59.99765 * 13 11 10 37 37 H 1.08991 * 109.47064 * 175.00099 * 14 11 10 38 38 H 1.09004 * 109.46618 * 295.00294 * 14 11 10 39 39 H 0.97001 * 120.00004 * 0.02562 * 15 14 11 40 40 H 1.08995 * 109.46615 * 300.00232 * 18 16 15 41 41 H 1.08999 * 109.46886 * 59.99373 * 18 16 15 42 42 H 0.96999 * 119.99917 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2581 1.0606 0.0000 4 8 3.6082 0.6246 0.0006 5 7 3.5710 -0.7936 0.0062 6 6 2.3213 -1.1499 0.0006 7 6 1.8208 -2.5714 0.0012 8 6 1.6541 -3.0459 -1.4194 9 8 1.9154 -2.3027 -2.3416 10 7 1.2146 -4.2960 -1.6652 11 6 1.0530 -4.7574 -3.0461 12 1 0.7202 -3.9278 -3.6698 13 6 2.3916 -5.2831 -3.5681 14 6 0.0125 -5.8783 -3.0909 15 7 -1.2350 -5.4112 -2.4813 16 6 -2.2991 -6.2350 -2.4084 17 8 -2.2241 -7.3630 -2.8479 18 6 -3.5827 -5.7544 -1.7818 19 16 -4.8135 -7.0804 -1.8347 20 6 -6.1716 -6.2683 -1.0598 21 1 -6.0694 -5.2475 -0.7225 22 6 -7.3731 -6.9406 -0.8830 23 7 -7.4979 -8.1846 -1.2947 24 14 -8.8132 -6.0794 -0.0622 25 1 -8.4184 -4.6957 0.3052 26 1 -9.9631 -6.0339 -1.0008 27 1 -9.2027 -6.8240 1.1622 28 1 -0.3633 0.0001 1.0276 29 1 -0.3633 0.8900 -0.5139 30 1 -0.3633 -0.8899 -0.5139 31 1 2.5397 -3.2094 0.5153 32 1 0.8607 -2.6183 0.5150 33 1 1.0052 -4.8902 -0.9276 34 1 2.2716 -5.6260 -4.5958 35 1 3.1329 -4.4845 -3.5363 36 1 2.7244 -6.1127 -2.9444 37 1 -0.1728 -6.1607 -4.1272 38 1 0.3850 -6.7419 -2.5400 39 1 -1.2951 -4.5090 -2.1302 40 1 -3.3974 -5.4712 -0.7458 41 1 -3.9552 -4.8911 -2.3333 42 1 -8.3374 -8.6545 -1.1708 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001298861992.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:20:25 Heat of formation + Delta-G solvation = 9.340664 kcal Electronic energy + Delta-G solvation = -26410.388191 eV Core-core repulsion = 22328.065834 eV Total energy + Delta-G solvation = -4082.322357 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.119 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.98523 -40.43605 -39.23361 -36.77122 -35.00821 -33.93832 -33.80618 -32.49600 -31.90474 -29.78364 -29.38805 -29.10911 -26.13736 -25.45948 -23.52718 -22.17681 -21.26688 -20.79374 -20.48018 -18.21508 -17.80645 -17.49454 -16.79941 -16.40101 -16.36868 -15.95549 -15.81995 -15.24132 -14.86792 -14.80547 -14.62471 -14.31558 -14.16091 -13.87955 -13.62029 -13.52884 -13.24859 -13.14981 -13.02764 -12.76740 -12.62293 -12.36097 -12.18086 -12.08508 -11.91630 -11.44826 -11.37803 -11.12672 -11.09195 -11.03420 -10.81971 -10.45325 -9.88402 -9.72943 -9.53503 -9.15507 -9.07963 -8.31595 -6.58069 -6.28599 -3.99749 0.11516 1.45165 1.98437 2.16562 2.54092 2.72457 2.91257 2.96275 3.16535 3.22873 3.26698 3.36027 3.58828 3.94605 4.13477 4.15443 4.27909 4.30781 4.54779 4.66855 4.71351 4.83390 4.85416 4.85883 5.03023 5.06958 5.14186 5.22483 5.26706 5.38259 5.42094 5.53981 5.64661 5.77124 5.79841 5.93429 6.02538 6.40470 6.49254 6.85961 7.51222 7.53503 7.58329 8.28316 8.45592 9.17034 10.78823 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.012019 B = 0.002261 C = 0.001939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2329.017047 B =12382.766471 C =14434.851794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.087 3.913 3 N -0.277 5.277 4 O 0.028 5.972 5 N -0.263 5.263 6 C 0.096 3.904 7 C -0.083 4.083 8 C 0.521 3.479 9 O -0.527 6.527 10 N -0.721 5.721 11 C 0.132 3.868 12 H 0.098 0.902 13 C -0.162 4.162 14 C 0.113 3.887 15 N -0.741 5.741 16 C 0.532 3.468 17 O -0.514 6.514 18 C -0.153 4.153 19 S -0.060 6.060 20 C -0.536 4.536 21 H 0.073 0.927 22 C 0.073 3.927 23 N -0.867 5.867 24 Si 0.919 3.081 25 H -0.272 1.272 26 H -0.280 1.280 27 H -0.280 1.280 28 H 0.100 0.900 29 H 0.093 0.907 30 H 0.093 0.907 31 H 0.128 0.872 32 H 0.133 0.867 33 H 0.407 0.593 34 H 0.072 0.928 35 H 0.065 0.935 36 H 0.063 0.937 37 H 0.084 0.916 38 H 0.074 0.926 39 H 0.398 0.602 40 H 0.089 0.911 41 H 0.090 0.910 42 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.061 11.663 3.204 22.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.095 4.095 3 N -0.022 5.022 4 O -0.114 6.114 5 N -0.005 5.005 6 C -0.088 4.088 7 C -0.124 4.124 8 C 0.305 3.695 9 O -0.402 6.402 10 N -0.374 5.374 11 C 0.028 3.972 12 H 0.116 0.884 13 C -0.221 4.221 14 C -0.012 4.012 15 N -0.396 5.396 16 C 0.318 3.682 17 O -0.388 6.388 18 C -0.304 4.304 19 S 0.167 5.833 20 C -0.684 4.684 21 H 0.091 0.909 22 C -0.136 4.136 23 N -0.502 5.502 24 Si 0.745 3.255 25 H -0.196 1.196 26 H -0.205 1.205 27 H -0.206 1.206 28 H 0.118 0.882 29 H 0.111 0.889 30 H 0.112 0.888 31 H 0.146 0.854 32 H 0.151 0.849 33 H 0.242 0.758 34 H 0.091 0.909 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.102 0.898 38 H 0.093 0.907 39 H 0.232 0.768 40 H 0.108 0.892 41 H 0.108 0.892 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 20.465 10.984 1.768 23.294 hybrid contribution -1.652 1.527 1.527 2.720 sum 18.813 12.512 3.295 22.832 Atomic orbital electron populations 1.20616 0.84001 1.05743 1.04937 1.24554 1.00405 0.88732 0.95840 1.79952 0.88968 1.19519 1.13775 1.93400 1.20326 1.13095 1.84543 1.79892 1.17357 0.91650 1.11592 1.23725 0.90107 0.97603 0.97367 1.20372 1.05578 0.89383 0.97074 1.20067 0.77208 0.82010 0.90214 1.90803 1.48916 1.54665 1.45839 1.46048 1.67809 1.14158 1.09420 1.21303 0.95715 0.97453 0.82747 0.88420 1.22111 0.96236 1.01774 1.01947 1.21622 0.83247 0.95974 1.00345 1.45989 1.12398 1.17232 1.63986 1.20345 0.84236 0.85156 0.78475 1.90723 1.83011 1.19080 1.45983 1.23526 0.97278 1.06650 1.02954 1.85437 1.04521 1.14245 1.79140 1.22887 0.98557 1.01766 1.45174 0.90868 1.25002 0.98287 0.94938 0.95387 1.70021 1.26285 1.09916 1.43982 0.86114 0.81085 0.79325 0.78943 1.19606 1.20547 1.20557 0.88205 0.88857 0.88795 0.85432 0.84890 0.75784 0.90860 0.91592 0.91830 0.89800 0.90734 0.76824 0.89233 0.89216 0.92180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.40 10.05 36.01 0.36 -0.04 16 2 C 0.09 0.71 7.19 -82.38 -0.59 0.12 16 3 N -0.28 -3.07 12.98 33.74 0.44 -2.63 16 4 O 0.03 0.35 13.71 12.02 0.16 0.52 16 5 N -0.26 -2.91 12.98 33.74 0.44 -2.48 16 6 C 0.10 0.78 5.68 -82.38 -0.47 0.31 16 7 C -0.08 -0.34 5.87 -29.03 -0.17 -0.51 16 8 C 0.52 3.50 7.79 -10.99 -0.09 3.42 16 9 O -0.53 -5.92 15.70 5.56 0.09 -5.84 16 10 N -0.72 -3.65 4.52 -53.81 -0.24 -3.89 16 11 C 0.13 0.88 2.73 -67.93 -0.19 0.69 16 12 H 0.10 0.78 7.58 -51.93 -0.39 0.39 16 13 C -0.16 -1.03 9.48 37.16 0.35 -0.68 16 14 C 0.11 0.96 5.23 -4.04 -0.02 0.94 16 15 N -0.74 -7.63 5.39 -60.29 -0.32 -7.96 16 16 C 0.53 8.59 7.85 -10.98 -0.09 8.50 16 17 O -0.51 -10.55 15.86 5.55 0.09 -10.47 16 18 C -0.15 -2.76 6.16 36.01 0.22 -2.54 16 19 S -0.06 -1.54 20.57 -107.50 -2.21 -3.75 16 20 C -0.54 -14.52 9.50 30.94 0.29 -14.23 16 21 H 0.07 1.87 7.80 -52.49 -0.41 1.46 16 22 C 0.07 2.01 5.49 -17.43 -0.10 1.91 16 23 N -0.87 -25.30 13.22 55.49 0.73 -24.57 16 24 Si 0.92 20.56 29.55 -169.99 -5.02 15.54 16 25 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 26 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 27 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 28 H 0.10 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.09 0.41 8.14 -51.92 -0.42 -0.01 16 30 H 0.09 0.27 7.77 -51.93 -0.40 -0.13 16 31 H 0.13 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.13 0.07 7.77 -51.93 -0.40 -0.34 16 33 H 0.41 1.24 8.60 -40.82 -0.35 0.89 16 34 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 35 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 37 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.40 3.08 8.14 -40.82 -0.33 2.75 16 40 H 0.09 1.43 8.14 -51.92 -0.42 1.01 16 41 H 0.09 1.50 8.14 -51.92 -0.42 1.08 16 42 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 386.22 15.07 5.82 5.82 Total: -1.00 -38.33 386.22 -6.16 -44.49 By element: Atomic # 1 Polarization: 2.96 SS G_CDS: -5.66 Total: -2.69 kcal Atomic # 6 Polarization: -1.62 SS G_CDS: -0.47 Total: -2.10 kcal Atomic # 7 Polarization: -42.57 SS G_CDS: 1.04 Total: -41.53 kcal Atomic # 8 Polarization: -16.13 SS G_CDS: 0.34 Total: -15.79 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Atomic # 16 Polarization: -1.54 SS G_CDS: -2.21 Total: -3.75 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -38.33 -6.16 -44.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001298861992.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.835 kcal (2) G-P(sol) polarization free energy of solvation -38.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.495 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds