Wall clock time and date at job start Wed Apr 1 2020 01:20:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.29958 * 125.30537 * 2 1 4 4 O 1.41877 * 107.41094 * 179.97438 * 3 2 1 5 5 N 1.41874 * 106.39116 * 359.78119 * 4 3 2 6 6 C 1.29950 * 107.41260 * 0.36838 * 5 4 3 7 7 C 1.50706 * 125.30578 * 179.89173 * 6 5 4 8 8 C 1.50703 * 109.47001 * 269.69290 * 7 6 5 9 9 O 1.21281 * 119.99990 * 359.97438 * 8 7 6 10 10 N 1.34772 * 120.00069 * 179.97438 * 8 7 6 11 11 C 1.46496 * 120.00214 * 180.02562 * 10 8 7 12 12 H 1.08995 * 109.47079 * 324.99818 * 11 10 8 13 13 C 1.52997 * 109.47139 * 85.00355 * 11 10 8 14 14 C 1.53003 * 109.47321 * 205.00102 * 11 10 8 15 15 N 1.46499 * 109.46907 * 54.99680 * 14 11 10 16 16 C 1.34773 * 119.99808 * 180.02562 * 15 14 11 17 17 O 1.21286 * 120.00441 * 359.97438 * 16 15 14 18 18 C 1.50707 * 120.00162 * 180.02562 * 16 15 14 19 19 S 1.80995 * 109.47303 * 179.97438 * 18 16 15 20 20 C 1.76194 * 99.99946 * 179.97438 * 19 18 16 21 21 H 1.07998 * 120.00342 * 0.02562 * 20 19 18 22 22 C 1.38805 * 119.99973 * 180.02562 * 20 19 18 23 23 N 1.31629 * 119.99952 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 119.99963 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.47209 * 359.97438 * 24 22 20 26 26 H 1.48506 * 109.47287 * 119.99667 * 24 22 20 27 27 H 1.48503 * 109.47241 * 240.00039 * 24 22 20 28 28 H 1.08998 * 109.47081 * 270.00327 * 1 2 3 29 29 H 1.09007 * 109.46853 * 30.00311 * 1 2 3 30 30 H 1.08993 * 109.46958 * 149.99675 * 1 2 3 31 31 H 1.09000 * 109.46646 * 29.68748 * 7 6 5 32 32 H 1.09000 * 109.47248 * 149.69466 * 7 6 5 33 33 H 0.97000 * 119.99813 * 0.02562 * 10 8 7 34 34 H 1.08999 * 109.47317 * 180.02562 * 13 11 10 35 35 H 1.09002 * 109.46974 * 299.99457 * 13 11 10 36 36 H 1.08995 * 109.47573 * 59.99765 * 13 11 10 37 37 H 1.08991 * 109.47064 * 175.00099 * 14 11 10 38 38 H 1.09004 * 109.46618 * 295.00294 * 14 11 10 39 39 H 0.97001 * 120.00004 * 0.02562 * 15 14 11 40 40 H 1.08995 * 109.46615 * 300.00232 * 18 16 15 41 41 H 1.08999 * 109.46886 * 59.99373 * 18 16 15 42 42 H 0.96999 * 119.99917 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2581 1.0606 0.0000 4 8 3.6082 0.6246 0.0006 5 7 3.5710 -0.7936 0.0062 6 6 2.3213 -1.1499 0.0006 7 6 1.8208 -2.5714 0.0012 8 6 1.6541 -3.0459 -1.4194 9 8 1.9154 -2.3027 -2.3416 10 7 1.2146 -4.2960 -1.6652 11 6 1.0530 -4.7574 -3.0461 12 1 0.7202 -3.9278 -3.6698 13 6 2.3916 -5.2831 -3.5681 14 6 0.0125 -5.8783 -3.0909 15 7 -1.2350 -5.4112 -2.4813 16 6 -2.2991 -6.2350 -2.4084 17 8 -2.2241 -7.3630 -2.8479 18 6 -3.5827 -5.7544 -1.7818 19 16 -4.8135 -7.0804 -1.8347 20 6 -6.1716 -6.2683 -1.0598 21 1 -6.0694 -5.2475 -0.7225 22 6 -7.3731 -6.9406 -0.8830 23 7 -7.4979 -8.1846 -1.2947 24 14 -8.8132 -6.0794 -0.0622 25 1 -8.4184 -4.6957 0.3052 26 1 -9.9631 -6.0339 -1.0008 27 1 -9.2027 -6.8240 1.1622 28 1 -0.3633 0.0001 1.0276 29 1 -0.3633 0.8900 -0.5139 30 1 -0.3633 -0.8899 -0.5139 31 1 2.5397 -3.2094 0.5153 32 1 0.8607 -2.6183 0.5150 33 1 1.0052 -4.8902 -0.9276 34 1 2.2716 -5.6260 -4.5958 35 1 3.1329 -4.4845 -3.5363 36 1 2.7244 -6.1127 -2.9444 37 1 -0.1728 -6.1607 -4.1272 38 1 0.3850 -6.7419 -2.5400 39 1 -1.2951 -4.5090 -2.1302 40 1 -3.3974 -5.4712 -0.7458 41 1 -3.9552 -4.8911 -2.3333 42 1 -8.3374 -8.6545 -1.1708 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001298861992.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:20:24 Heat of formation + Delta-G solvation = -21.680753 kcal Electronic energy + Delta-G solvation = -26411.733380 eV Core-core repulsion = 22328.065834 eV Total energy + Delta-G solvation = -4083.667547 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.119 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.63151 -41.11446 -40.35567 -37.55076 -35.63783 -34.83226 -34.53582 -34.48735 -32.61079 -30.87483 -30.08656 -29.57099 -27.69709 -26.79097 -24.16746 -22.77755 -21.87730 -21.67980 -21.33913 -19.81950 -18.59375 -18.14350 -17.70325 -17.50298 -17.13042 -16.83925 -16.69980 -16.48787 -16.34967 -15.79277 -15.40964 -15.25740 -14.88795 -14.74925 -14.50185 -14.23840 -14.15081 -13.99478 -13.82863 -13.63712 -13.21901 -13.13966 -13.10843 -12.97545 -12.88366 -12.86766 -12.60192 -12.54154 -12.14171 -12.04484 -11.67036 -11.66102 -11.12131 -11.05725 -10.93208 -10.24957 -10.20027 -10.10340 -8.60930 -8.30866 -6.07556 -0.56334 0.87176 1.31969 1.44634 1.46601 1.48833 1.52323 1.61724 1.67693 1.98027 2.14167 2.29838 2.35637 2.80278 3.04005 3.37311 3.46048 3.58973 3.78744 3.92055 4.01725 4.09805 4.16451 4.27320 4.38794 4.39230 4.51369 4.59657 4.61636 4.64428 4.72431 4.74221 4.80371 4.98820 5.10895 5.25029 5.38401 5.45897 5.47211 5.81733 6.24402 6.42693 6.52832 7.11477 7.12755 7.29145 8.78267 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.012019 B = 0.002261 C = 0.001939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2329.017047 B =12382.766471 C =14434.851794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.098 3.902 3 N -0.311 5.311 4 O -0.020 6.020 5 N -0.293 5.293 6 C 0.107 3.893 7 C -0.079 4.079 8 C 0.525 3.475 9 O -0.576 6.576 10 N -0.707 5.707 11 C 0.145 3.855 12 H 0.088 0.912 13 C -0.159 4.159 14 C 0.116 3.884 15 N -0.711 5.711 16 C 0.536 3.464 17 O -0.564 6.564 18 C -0.129 4.129 19 S -0.156 6.156 20 C -0.541 4.541 21 H 0.085 0.915 22 C 0.012 3.988 23 N -0.912 5.912 24 Si 0.996 3.004 25 H -0.253 1.253 26 H -0.279 1.279 27 H -0.276 1.276 28 H 0.128 0.872 29 H 0.090 0.910 30 H 0.115 0.885 31 H 0.152 0.848 32 H 0.181 0.819 33 H 0.421 0.579 34 H 0.077 0.923 35 H 0.051 0.949 36 H 0.074 0.926 37 H 0.076 0.924 38 H 0.080 0.920 39 H 0.415 0.585 40 H 0.117 0.883 41 H 0.107 0.893 42 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.324 12.515 4.775 22.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.085 4.085 3 N -0.060 5.060 4 O -0.153 6.153 5 N -0.039 5.039 6 C -0.078 4.078 7 C -0.120 4.120 8 C 0.311 3.689 9 O -0.455 6.455 10 N -0.361 5.361 11 C 0.039 3.961 12 H 0.106 0.894 13 C -0.217 4.217 14 C -0.008 4.008 15 N -0.365 5.365 16 C 0.322 3.678 17 O -0.442 6.442 18 C -0.281 4.281 19 S 0.072 5.928 20 C -0.688 4.688 21 H 0.103 0.897 22 C -0.193 4.193 23 N -0.549 5.549 24 Si 0.818 3.182 25 H -0.177 1.177 26 H -0.204 1.204 27 H -0.202 1.202 28 H 0.146 0.854 29 H 0.109 0.891 30 H 0.134 0.866 31 H 0.170 0.830 32 H 0.199 0.801 33 H 0.259 0.741 34 H 0.095 0.905 35 H 0.070 0.930 36 H 0.093 0.907 37 H 0.094 0.906 38 H 0.098 0.902 39 H 0.252 0.748 40 H 0.136 0.864 41 H 0.126 0.874 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 19.804 11.896 3.370 23.347 hybrid contribution -1.363 1.244 0.990 2.094 sum 18.441 13.140 4.360 23.060 Atomic orbital electron populations 1.20911 0.80890 1.06680 1.06951 1.25300 1.02083 0.88037 0.93115 1.79915 0.88736 1.21070 1.16265 1.93363 1.21682 1.14157 1.86087 1.79843 1.19308 0.91049 1.13681 1.24407 0.89238 0.99446 0.94706 1.20670 1.08584 0.86926 0.95783 1.20410 0.76118 0.81728 0.90672 1.90808 1.51101 1.56032 1.47545 1.45902 1.67039 1.13952 1.09223 1.21068 0.95134 0.96282 0.83570 0.89403 1.22072 0.95485 1.01590 1.02588 1.21695 0.82424 0.96818 0.99832 1.45651 1.11426 1.17131 1.62327 1.20026 0.84786 0.84881 0.78121 1.90720 1.83795 1.21332 1.48391 1.23373 0.95736 1.03666 1.05286 1.85639 1.07884 1.19694 1.79625 1.23233 0.98848 1.02135 1.44626 0.89656 1.26103 1.01559 0.95598 0.96018 1.70188 1.27137 1.11852 1.45736 0.84939 0.76845 0.78771 0.77608 1.17690 1.20423 1.20152 0.85361 0.89100 0.86632 0.82981 0.80126 0.74072 0.90452 0.92998 0.90717 0.90598 0.90184 0.74760 0.86450 0.87441 0.92147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.48 10.05 71.24 0.72 0.23 16 2 C 0.10 1.43 7.19 43.49 0.31 1.75 16 3 N -0.31 -7.00 12.98 -47.15 -0.61 -7.61 16 4 O -0.02 -0.53 13.71 70.17 0.96 0.43 16 5 N -0.29 -6.51 12.98 -47.15 -0.61 -7.13 16 6 C 0.11 1.54 5.68 43.49 0.25 1.78 16 7 C -0.08 -0.33 5.87 29.10 0.17 -0.16 16 8 C 0.52 5.37 7.79 87.66 0.68 6.05 16 9 O -0.58 -11.98 15.70 -3.03 -0.05 -12.03 16 10 N -0.71 -4.53 4.52 -442.55 -2.00 -6.53 16 11 C 0.14 1.54 2.73 44.99 0.12 1.66 16 12 H 0.09 1.21 7.58 -2.39 -0.02 1.19 16 13 C -0.16 -1.71 9.48 71.98 0.68 -1.03 16 14 C 0.12 1.67 5.23 86.38 0.45 2.13 16 15 N -0.71 -12.27 5.39 -463.06 -2.49 -14.76 16 16 C 0.54 16.16 7.85 87.66 0.69 16.85 16 17 O -0.56 -22.87 15.86 -3.05 -0.05 -22.92 16 18 C -0.13 -4.34 6.16 71.24 0.44 -3.90 16 19 S -0.16 -8.00 20.57 -56.49 -1.16 -9.16 16 20 C -0.54 -28.86 9.50 67.96 0.65 -28.21 16 21 H 0.09 4.17 7.80 -2.91 -0.02 4.15 16 22 C 0.01 0.64 5.49 84.86 0.47 1.11 16 23 N -0.91 -54.02 13.22 21.65 0.29 -53.74 16 24 Si 1.00 41.37 29.55 68.60 2.03 43.40 16 25 H -0.25 -9.65 7.11 99.48 0.71 -8.95 16 26 H -0.28 -11.41 7.11 99.48 0.71 -10.70 16 27 H -0.28 -11.19 7.11 99.48 0.71 -10.48 16 28 H 0.13 -0.01 8.14 -2.39 -0.02 -0.03 16 29 H 0.09 0.57 8.14 -2.38 -0.02 0.55 16 30 H 0.12 0.11 7.77 -2.39 -0.02 0.09 16 31 H 0.15 0.00 8.14 -2.39 -0.02 -0.02 16 32 H 0.18 -0.97 7.77 -2.39 -0.02 -0.99 16 33 H 0.42 0.55 8.60 -92.71 -0.80 -0.25 16 34 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 36 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 37 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.42 4.53 8.14 -92.71 -0.75 3.77 16 40 H 0.12 3.30 8.14 -2.40 -0.02 3.28 16 41 H 0.11 3.25 8.14 -2.40 -0.02 3.23 16 42 H 0.27 14.84 8.31 -92.71 -0.77 14.07 16 Total: -1.00 -89.78 386.22 1.45 -88.33 By element: Atomic # 1 Polarization: 3.93 SS G_CDS: -0.47 Total: 3.45 kcal Atomic # 6 Polarization: -7.37 SS G_CDS: 5.62 Total: -1.74 kcal Atomic # 7 Polarization: -84.34 SS G_CDS: -5.43 Total: -89.77 kcal Atomic # 8 Polarization: -35.38 SS G_CDS: 0.87 Total: -34.51 kcal Atomic # 14 Polarization: 41.37 SS G_CDS: 2.03 Total: 43.40 kcal Atomic # 16 Polarization: -8.00 SS G_CDS: -1.16 Total: -9.16 kcal Total: -89.78 1.45 -88.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001298861992.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.654 kcal (2) G-P(sol) polarization free energy of solvation -89.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds