Wall clock time and date at job start Wed Apr 1 2020 00:26:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30738 * 1 3 3 Si 1.86797 * 120.00245 * 2 1 4 4 H 1.48497 * 109.47454 * 272.44069 * 3 2 1 5 5 H 1.48498 * 109.47115 * 32.44690 * 3 2 1 6 6 H 1.48504 * 109.47119 * 152.44191 * 3 2 1 7 7 C 1.40030 * 119.99569 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00196 * 347.68979 * 7 2 1 9 9 C 1.41550 * 119.99710 * 167.68642 * 7 2 1 10 10 C 1.41161 * 120.99606 * 149.46937 * 9 7 2 11 11 C 1.36593 * 119.12702 * 180.02562 * 10 9 7 12 12 N 1.32061 * 121.25926 * 359.74660 * 11 10 9 13 13 C 1.32493 * 122.23120 * 0.52804 * 12 11 10 14 14 N 1.39453 * 119.64933 * 179.75094 * 13 12 11 15 15 C 1.34774 * 120.00418 * 4.94821 * 14 13 12 16 16 O 1.21582 * 119.99740 * 355.14828 * 15 14 13 17 17 N 1.34775 * 120.00387 * 174.86847 * 15 14 13 18 18 C 1.46500 * 120.00306 * 180.27505 * 17 15 14 19 19 C 1.52994 * 109.47343 * 180.02562 * 18 17 15 20 20 C 1.52995 * 109.47271 * 180.02562 * 19 18 17 21 21 C 1.53002 * 109.47567 * 179.97438 * 20 19 18 22 22 S 1.81397 * 109.47403 * 179.97438 * 21 20 19 23 23 N 1.65605 * 104.44950 * 180.02562 * 22 21 20 24 24 O 1.42100 * 110.54540 * 291.62866 * 22 21 20 25 25 O 1.42104 * 110.54225 * 68.37942 * 22 21 20 26 26 C 1.38642 * 120.69900 * 359.47163 * 13 12 11 27 27 H 0.97009 * 120.00025 * 359.97438 * 1 2 3 28 28 H 1.08007 * 120.43759 * 359.97438 * 10 9 7 29 29 H 1.08000 * 119.36513 * 180.02562 * 11 10 9 30 30 H 0.97006 * 119.99785 * 184.94843 * 14 13 12 31 31 H 0.96998 * 120.00133 * 0.27704 * 17 15 14 32 32 H 1.09003 * 109.47170 * 300.00293 * 18 17 15 33 33 H 1.09011 * 109.46823 * 60.00092 * 18 17 15 34 34 H 1.09003 * 109.46977 * 300.00104 * 19 18 17 35 35 H 1.08997 * 109.47302 * 60.00192 * 19 18 17 36 36 H 1.08995 * 109.47392 * 300.00144 * 20 19 18 37 37 H 1.09010 * 109.47408 * 59.99929 * 20 19 18 38 38 H 1.08995 * 109.47141 * 300.00614 * 21 20 19 39 39 H 1.09004 * 109.46279 * 60.00046 * 21 20 19 40 40 H 0.97004 * 119.99802 * 0.02562 * 23 22 21 41 41 H 0.96995 * 120.00100 * 180.02562 * 23 22 21 42 42 H 1.08002 * 120.66286 * 180.27631 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 2.4374 2.0762 -1.3987 5 1 1.4658 2.6371 0.7512 6 1 3.5639 1.4257 0.6478 7 6 2.0074 -1.2128 -0.0005 8 1 1.4860 -2.1374 0.1985 9 6 3.3985 -1.2268 -0.2620 10 6 4.2368 -2.2050 0.3150 11 6 5.5740 -2.1825 0.0371 12 7 6.0924 -1.2682 -0.7625 13 6 5.3550 -0.3234 -1.3274 14 7 5.9596 0.6187 -2.1590 15 6 7.2675 0.5072 -2.4646 16 8 7.9409 -0.3623 -1.9461 17 7 7.8277 1.3559 -3.3490 18 6 9.2480 1.2309 -3.6857 19 6 9.6274 2.3078 -4.7041 20 6 11.1105 2.1768 -5.0562 21 6 11.4899 3.2533 -6.0752 22 16 13.2486 3.0984 -6.4920 23 7 13.5214 4.3087 -7.5889 24 8 14.0579 3.4474 -5.3774 25 8 13.4844 1.9028 -7.2229 26 6 3.9878 -0.2649 -1.1050 27 1 -0.4850 0.8401 0.0004 28 1 3.8265 -2.9609 0.9683 29 1 6.2188 -2.9294 0.4761 30 1 5.4388 1.3543 -2.5176 31 1 7.2905 2.0496 -3.7627 32 1 9.8476 1.3566 -2.7841 33 1 9.4349 0.2452 -4.1120 34 1 9.0279 2.1825 -5.6058 35 1 9.4406 3.2932 -4.2776 36 1 11.7104 2.3018 -4.1548 37 1 11.2971 1.1912 -5.4830 38 1 10.8901 3.1279 -6.9765 39 1 11.3034 4.2389 -5.6487 40 1 12.7959 4.8957 -7.8539 41 1 14.4065 4.4307 -7.9664 42 1 3.3866 0.5028 -1.5693 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001311074651.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:26:09 Heat of formation + Delta-G solvation = -69.991056 kcal Electronic energy + Delta-G solvation = -26056.543804 eV Core-core repulsion = 21970.781366 eV Total energy + Delta-G solvation = -4085.762439 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.119 amu Computer time = 2.44 seconds Orbital eigenvalues (eV) -40.04476 -38.41175 -37.46346 -36.64956 -36.36960 -34.45079 -33.95810 -33.75218 -33.72383 -31.30887 -29.99927 -28.50272 -26.02176 -24.51321 -22.38388 -22.08862 -21.65793 -20.12038 -19.91807 -18.42305 -18.04433 -17.79378 -17.71397 -16.87302 -16.43588 -15.97543 -15.82444 -15.67030 -15.12858 -14.96822 -14.67649 -14.20949 -13.98178 -13.80501 -13.26037 -13.16658 -12.96255 -12.91990 -12.80282 -12.62453 -12.55478 -12.41362 -12.19100 -11.79579 -11.62739 -11.28201 -11.10395 -10.99861 -10.98429 -10.85205 -10.68876 -10.07782 -9.95034 -9.71572 -9.39906 -8.98118 -8.22830 -7.88979 -7.26857 -7.06042 -4.75381 -0.30157 2.33073 2.38931 2.61650 2.79306 2.97343 3.10503 3.13230 3.22084 3.67215 3.72067 3.84067 3.86211 4.26221 4.29927 4.53864 4.58892 4.66166 4.71561 4.97773 5.16497 5.18488 5.39061 5.39898 5.43323 5.65001 5.73561 5.81467 6.22576 6.33215 6.38898 6.45898 6.52038 6.55261 6.90937 7.02203 7.17404 7.27512 7.63250 7.92344 8.16129 8.20662 8.42746 8.63973 8.95831 9.46855 9.95539 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.025884 B = 0.001722 C = 0.001646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.483146 B =16255.050335 C =17007.079567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.804 5.804 2 C 0.084 3.916 3 Si 0.919 3.081 4 H -0.272 1.272 5 H -0.292 1.292 6 H -0.244 1.244 7 C -0.437 4.437 8 H 0.096 0.904 9 C 0.129 3.871 10 C -0.270 4.270 11 C 0.129 3.871 12 N -0.552 5.552 13 C 0.386 3.614 14 N -0.673 5.673 15 C 0.692 3.308 16 O -0.527 6.527 17 N -0.755 5.755 18 C 0.137 3.863 19 C -0.122 4.122 20 C -0.111 4.111 21 C -0.619 4.619 22 S 2.612 3.388 23 N -1.254 6.254 24 O -0.962 6.962 25 O -0.961 6.961 26 C -0.323 4.323 27 H 0.287 0.713 28 H 0.110 0.890 29 H 0.129 0.871 30 H 0.403 0.597 31 H 0.392 0.608 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.137 0.863 39 H 0.137 0.863 40 H 0.412 0.588 41 H 0.420 0.580 42 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.209 13.903 -15.354 27.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.429 5.429 2 C -0.136 4.136 3 Si 0.746 3.254 4 H -0.198 1.198 5 H -0.220 1.220 6 H -0.168 1.168 7 C -0.468 4.468 8 H 0.114 0.886 9 C 0.121 3.879 10 C -0.294 4.294 11 C -0.022 4.022 12 N -0.272 5.272 13 C 0.157 3.843 14 N -0.320 5.320 15 C 0.391 3.609 16 O -0.397 6.397 17 N -0.413 5.413 18 C 0.012 3.988 19 C -0.161 4.161 20 C -0.151 4.151 21 C -0.749 4.749 22 S 2.704 3.296 23 N -0.927 5.927 24 O -0.951 6.951 25 O -0.951 6.951 26 C -0.349 4.349 27 H 0.098 0.902 28 H 0.128 0.872 29 H 0.147 0.853 30 H 0.238 0.762 31 H 0.225 0.775 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.094 0.906 35 H 0.093 0.907 36 H 0.106 0.894 37 H 0.106 0.894 38 H 0.155 0.845 39 H 0.155 0.845 40 H 0.238 0.762 41 H 0.249 0.751 42 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 20.199 12.338 -14.586 27.803 hybrid contribution -1.973 2.286 -0.723 3.105 sum 18.226 14.624 -15.309 27.936 Atomic orbital electron populations 1.69614 1.08032 1.30446 1.34781 1.26185 0.94834 1.01808 0.90773 0.86210 0.81007 0.79418 0.78723 1.19846 1.21961 1.16780 1.19510 0.90826 0.95785 1.40663 0.88639 1.17699 0.93431 0.89426 0.87359 1.21695 0.94328 1.05432 1.07949 1.21640 0.92857 0.94557 0.93168 1.67317 1.38077 1.06419 1.15377 1.17755 0.87781 0.88734 0.90009 1.42634 1.09267 1.29307 1.50833 1.16051 0.82018 0.82503 0.80339 1.91035 1.60500 1.34541 1.53611 1.45161 1.11283 1.36904 1.47969 1.21139 0.80746 0.98859 0.98061 1.21728 0.94899 0.99801 0.99721 1.21234 0.98494 0.97317 0.98008 1.30399 1.25061 1.09315 1.10115 1.04800 0.76930 0.73681 0.74145 1.53161 1.21123 1.53114 1.65258 1.93632 1.64865 1.83043 1.53547 1.93633 1.83771 1.46366 1.71294 1.21191 0.92714 1.08967 1.11991 0.90232 0.87172 0.85321 0.76229 0.77529 0.91361 0.91318 0.90645 0.90672 0.89450 0.89434 0.84461 0.84484 0.76230 0.75052 0.87477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.58 13.92 55.55 0.77 -19.81 16 2 C 0.08 2.12 5.48 -17.35 -0.10 2.02 16 3 Si 0.92 19.91 24.42 -169.99 -4.15 15.76 16 4 H -0.27 -5.48 6.67 56.52 0.38 -5.10 16 5 H -0.29 -6.12 7.11 56.52 0.40 -5.72 16 6 H -0.24 -5.57 6.65 56.52 0.38 -5.19 16 7 C -0.44 -11.46 9.67 -37.65 -0.36 -11.82 16 8 H 0.10 2.61 8.06 -52.49 -0.42 2.18 16 9 C 0.13 3.24 5.17 -106.55 -0.55 2.69 16 10 C -0.27 -6.30 9.85 -39.07 -0.38 -6.69 16 11 C 0.13 2.94 11.10 -18.05 -0.20 2.74 16 12 N -0.55 -13.49 7.85 -12.76 -0.10 -13.59 16 13 C 0.39 8.85 7.42 -154.68 -1.15 7.71 16 14 N -0.67 -12.34 5.40 -15.87 -0.09 -12.42 16 15 C 0.69 12.37 8.52 -86.92 -0.74 11.63 16 16 O -0.53 -11.83 14.60 5.29 0.08 -11.75 16 17 N -0.75 -8.96 5.56 -65.23 -0.36 -9.32 16 18 C 0.14 1.36 5.67 -4.05 -0.02 1.34 16 19 C -0.12 -0.69 5.33 -26.74 -0.14 -0.83 16 20 C -0.11 -0.57 5.22 -26.73 -0.14 -0.71 16 21 C -0.62 -1.62 6.09 37.16 0.23 -1.40 16 22 S 2.61 14.15 5.97 -107.50 -0.64 13.51 16 23 N -1.25 -2.81 9.43 60.35 0.57 -2.24 16 24 O -0.96 -9.32 18.10 -57.54 -1.04 -10.36 16 25 O -0.96 -9.34 18.10 -57.54 -1.04 -10.38 16 26 C -0.32 -7.61 6.95 -38.46 -0.27 -7.88 16 27 H 0.29 6.62 8.29 -40.82 -0.34 6.28 16 28 H 0.11 2.36 8.06 -52.48 -0.42 1.93 16 29 H 0.13 2.53 8.06 -52.49 -0.42 2.11 16 30 H 0.40 5.82 8.72 -40.82 -0.36 5.47 16 31 H 0.39 3.29 8.49 -40.82 -0.35 2.94 16 32 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.07 0.76 8.14 -51.92 -0.42 0.33 16 34 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 36 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.09 0.45 8.14 -51.92 -0.42 0.03 16 38 H 0.14 0.07 8.14 -51.93 -0.42 -0.35 16 39 H 0.14 0.07 8.14 -51.92 -0.42 -0.35 16 40 H 0.41 -0.35 8.83 -34.47 -0.30 -0.65 16 41 H 0.42 0.78 8.96 -34.47 -0.31 0.47 16 42 H 0.11 2.41 4.43 -52.49 -0.23 2.17 16 LS Contribution 367.30 15.07 5.54 5.54 Total: -1.00 -39.85 367.30 -9.68 -49.54 By element: Atomic # 1 Polarization: 12.13 SS G_CDS: -5.38 Total: 6.74 kcal Atomic # 6 Polarization: 2.62 SS G_CDS: -3.83 Total: -1.21 kcal Atomic # 7 Polarization: -58.17 SS G_CDS: 0.79 Total: -57.38 kcal Atomic # 8 Polarization: -30.49 SS G_CDS: -2.01 Total: -32.49 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -4.15 Total: 15.76 kcal Atomic # 16 Polarization: 14.15 SS G_CDS: -0.64 Total: 13.51 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -39.85 -9.68 -49.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001311074651.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.454 kcal (2) G-P(sol) polarization free energy of solvation -39.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.44 seconds