Wall clock time and date at job start Wed Apr 1 2020 00:26:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30738 * 1 3 3 Si 1.86797 * 120.00245 * 2 1 4 4 H 1.48497 * 109.47454 * 272.44069 * 3 2 1 5 5 H 1.48498 * 109.47115 * 32.44690 * 3 2 1 6 6 H 1.48504 * 109.47119 * 152.44191 * 3 2 1 7 7 C 1.40030 * 119.99569 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00196 * 347.68979 * 7 2 1 9 9 C 1.41550 * 119.99710 * 167.68642 * 7 2 1 10 10 C 1.41161 * 120.99606 * 149.46937 * 9 7 2 11 11 C 1.36593 * 119.12702 * 180.02562 * 10 9 7 12 12 N 1.32061 * 121.25926 * 359.74660 * 11 10 9 13 13 C 1.32493 * 122.23120 * 0.52804 * 12 11 10 14 14 N 1.39453 * 119.64933 * 179.75094 * 13 12 11 15 15 C 1.34774 * 120.00418 * 4.94821 * 14 13 12 16 16 O 1.21582 * 119.99740 * 355.14828 * 15 14 13 17 17 N 1.34775 * 120.00387 * 174.86847 * 15 14 13 18 18 C 1.46500 * 120.00306 * 180.27505 * 17 15 14 19 19 C 1.52994 * 109.47343 * 180.02562 * 18 17 15 20 20 C 1.52995 * 109.47271 * 180.02562 * 19 18 17 21 21 C 1.53002 * 109.47567 * 179.97438 * 20 19 18 22 22 S 1.81397 * 109.47403 * 179.97438 * 21 20 19 23 23 N 1.65605 * 104.44950 * 180.02562 * 22 21 20 24 24 O 1.42100 * 110.54540 * 291.62866 * 22 21 20 25 25 O 1.42104 * 110.54225 * 68.37942 * 22 21 20 26 26 C 1.38642 * 120.69900 * 359.47163 * 13 12 11 27 27 H 0.97009 * 120.00025 * 359.97438 * 1 2 3 28 28 H 1.08007 * 120.43759 * 359.97438 * 10 9 7 29 29 H 1.08000 * 119.36513 * 180.02562 * 11 10 9 30 30 H 0.97006 * 119.99785 * 184.94843 * 14 13 12 31 31 H 0.96998 * 120.00133 * 0.27704 * 17 15 14 32 32 H 1.09003 * 109.47170 * 300.00293 * 18 17 15 33 33 H 1.09011 * 109.46823 * 60.00092 * 18 17 15 34 34 H 1.09003 * 109.46977 * 300.00104 * 19 18 17 35 35 H 1.08997 * 109.47302 * 60.00192 * 19 18 17 36 36 H 1.08995 * 109.47392 * 300.00144 * 20 19 18 37 37 H 1.09010 * 109.47408 * 59.99929 * 20 19 18 38 38 H 1.08995 * 109.47141 * 300.00614 * 21 20 19 39 39 H 1.09004 * 109.46279 * 60.00046 * 21 20 19 40 40 H 0.97004 * 119.99802 * 0.02562 * 23 22 21 41 41 H 0.96995 * 120.00100 * 180.02562 * 23 22 21 42 42 H 1.08002 * 120.66286 * 180.27631 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 2.4374 2.0762 -1.3987 5 1 1.4658 2.6371 0.7512 6 1 3.5639 1.4257 0.6478 7 6 2.0074 -1.2128 -0.0005 8 1 1.4860 -2.1374 0.1985 9 6 3.3985 -1.2268 -0.2620 10 6 4.2368 -2.2050 0.3150 11 6 5.5740 -2.1825 0.0371 12 7 6.0924 -1.2682 -0.7625 13 6 5.3550 -0.3234 -1.3274 14 7 5.9596 0.6187 -2.1590 15 6 7.2675 0.5072 -2.4646 16 8 7.9409 -0.3623 -1.9461 17 7 7.8277 1.3559 -3.3490 18 6 9.2480 1.2309 -3.6857 19 6 9.6274 2.3078 -4.7041 20 6 11.1105 2.1768 -5.0562 21 6 11.4899 3.2533 -6.0752 22 16 13.2486 3.0984 -6.4920 23 7 13.5214 4.3087 -7.5889 24 8 14.0579 3.4474 -5.3774 25 8 13.4844 1.9028 -7.2229 26 6 3.9878 -0.2649 -1.1050 27 1 -0.4850 0.8401 0.0004 28 1 3.8265 -2.9609 0.9683 29 1 6.2188 -2.9294 0.4761 30 1 5.4388 1.3543 -2.5176 31 1 7.2905 2.0496 -3.7627 32 1 9.8476 1.3566 -2.7841 33 1 9.4349 0.2452 -4.1120 34 1 9.0279 2.1825 -5.6058 35 1 9.4406 3.2932 -4.2776 36 1 11.7104 2.3018 -4.1548 37 1 11.2971 1.1912 -5.4830 38 1 10.8901 3.1279 -6.9765 39 1 11.3034 4.2389 -5.6487 40 1 12.7959 4.8957 -7.8539 41 1 14.4065 4.4307 -7.9664 42 1 3.3866 0.5028 -1.5693 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001311074651.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:26:08 Heat of formation + Delta-G solvation = -105.004703 kcal Electronic energy + Delta-G solvation = -26058.062110 eV Core-core repulsion = 21970.781366 eV Total energy + Delta-G solvation = -4087.280744 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.119 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.53984 -40.02852 -38.02678 -37.39521 -36.94099 -36.09632 -35.55421 -34.83231 -33.97716 -33.18774 -31.13077 -29.71108 -27.90711 -25.28991 -24.19077 -23.22043 -22.51895 -21.65977 -20.32042 -19.79649 -19.42853 -18.48972 -18.15038 -17.96873 -17.35666 -17.31370 -16.77840 -16.48878 -16.27950 -16.16912 -16.04976 -15.92796 -15.16724 -14.87202 -14.83502 -14.72749 -14.24462 -13.76432 -13.53679 -13.43796 -13.17686 -13.11799 -13.01718 -12.77754 -12.75132 -12.62234 -12.60641 -12.31241 -11.83488 -11.71697 -11.61621 -11.51780 -11.35092 -11.22602 -11.14301 -10.15297 -10.06081 -9.68997 -8.97851 -8.93528 -6.72667 -0.68452 0.60996 0.77373 1.23432 1.40907 1.49059 1.54947 2.02456 2.10623 2.21330 2.71292 2.75168 3.12855 3.46817 3.49563 3.53868 3.90977 3.99084 4.10748 4.20849 4.26260 4.45221 4.60038 4.65519 4.66006 4.67044 4.72047 4.77317 4.90445 5.12803 5.18439 5.20933 5.30823 5.32222 5.50001 5.52654 5.68718 5.86713 6.12130 6.29125 6.40926 6.52952 6.69123 6.94197 7.53787 7.77188 8.12288 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.025884 B = 0.001722 C = 0.001646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.483146 B =16255.050335 C =17007.079567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.837 5.837 2 C 0.049 3.951 3 Si 0.971 3.029 4 H -0.240 1.240 5 H -0.279 1.279 6 H -0.263 1.263 7 C -0.469 4.469 8 H 0.065 0.935 9 C 0.114 3.886 10 C -0.282 4.282 11 C 0.129 3.871 12 N -0.573 5.573 13 C 0.383 3.617 14 N -0.664 5.664 15 C 0.687 3.313 16 O -0.577 6.577 17 N -0.728 5.728 18 C 0.130 3.870 19 C -0.109 4.109 20 C -0.126 4.126 21 C -0.593 4.593 22 S 2.617 3.383 23 N -1.240 6.240 24 O -1.013 7.013 25 O -1.013 7.013 26 C -0.326 4.326 27 H 0.298 0.702 28 H 0.120 0.880 29 H 0.157 0.843 30 H 0.423 0.577 31 H 0.414 0.586 32 H 0.055 0.945 33 H 0.054 0.946 34 H 0.095 0.905 35 H 0.096 0.904 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.170 0.830 39 H 0.170 0.830 40 H 0.428 0.572 41 H 0.423 0.577 42 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.599 17.009 -17.184 30.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.463 5.463 2 C -0.167 4.167 3 Si 0.794 3.206 4 H -0.165 1.165 5 H -0.206 1.206 6 H -0.187 1.187 7 C -0.499 4.499 8 H 0.083 0.917 9 C 0.106 3.894 10 C -0.305 4.305 11 C -0.023 4.023 12 N -0.292 5.292 13 C 0.153 3.847 14 N -0.313 5.313 15 C 0.387 3.613 16 O -0.451 6.451 17 N -0.387 5.387 18 C 0.005 3.995 19 C -0.148 4.148 20 C -0.166 4.166 21 C -0.726 4.726 22 S 2.713 3.287 23 N -0.918 5.918 24 O -1.002 7.002 25 O -1.002 7.002 26 C -0.352 4.352 27 H 0.109 0.891 28 H 0.138 0.862 29 H 0.175 0.825 30 H 0.261 0.739 31 H 0.250 0.750 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.114 0.886 35 H 0.115 0.885 36 H 0.100 0.900 37 H 0.100 0.900 38 H 0.188 0.812 39 H 0.188 0.812 40 H 0.258 0.742 41 H 0.253 0.747 42 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 20.601 15.516 -16.501 30.617 hybrid contribution -2.055 1.275 -0.176 2.424 sum 18.546 16.791 -16.677 30.067 Atomic orbital electron populations 1.69632 1.09107 1.31938 1.35613 1.26880 0.95488 1.04341 0.90033 0.85433 0.78809 0.76018 0.80356 1.16509 1.20551 1.18707 1.19490 0.91713 0.95514 1.43225 0.91654 1.17892 0.93172 0.90540 0.87801 1.21882 0.94689 1.05609 1.08352 1.22087 0.92981 0.94687 0.92534 1.67457 1.38822 1.07096 1.15868 1.17971 0.87815 0.88957 0.89961 1.42507 1.09820 1.28986 1.50032 1.16284 0.81499 0.82755 0.80787 1.91004 1.61514 1.36928 1.55686 1.44953 1.12139 1.35737 1.45826 1.21348 0.79174 1.00108 0.98829 1.21664 0.94997 0.98977 0.99166 1.21337 0.98400 0.98137 0.98687 1.30164 1.21202 1.10192 1.11029 1.04270 0.78110 0.73034 0.73299 1.52784 1.22000 1.52557 1.64435 1.93574 1.67749 1.83550 1.55335 1.93575 1.85441 1.49031 1.72177 1.21272 0.93240 1.08951 1.11747 0.89107 0.86162 0.82548 0.73946 0.74954 0.92641 0.92747 0.88607 0.88518 0.89972 0.90026 0.81238 0.81212 0.74209 0.74702 0.86227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -43.15 13.92 21.84 0.30 -42.84 16 2 C 0.05 2.49 5.48 85.29 0.47 2.96 16 3 Si 0.97 39.59 24.42 68.60 1.68 41.26 16 4 H -0.24 -8.54 6.67 99.48 0.66 -7.88 16 5 H -0.28 -10.71 7.11 99.48 0.71 -10.01 16 6 H -0.26 -11.46 6.65 99.48 0.66 -10.80 16 7 C -0.47 -25.22 9.67 23.52 0.23 -24.99 16 8 H 0.07 3.77 8.06 -2.91 -0.02 3.75 16 9 C 0.11 5.76 5.17 -21.11 -0.11 5.65 16 10 C -0.28 -13.20 9.85 22.60 0.22 -12.98 16 11 C 0.13 5.78 11.10 84.27 0.94 6.71 16 12 N -0.57 -27.50 7.85 -194.28 -1.53 -29.02 16 13 C 0.38 17.05 7.42 132.76 0.99 18.03 16 14 N -0.66 -22.77 5.40 -322.37 -1.74 -24.51 16 15 C 0.69 23.26 8.52 179.06 1.53 24.78 16 16 O -0.58 -25.54 14.60 -3.98 -0.06 -25.60 16 17 N -0.73 -15.05 5.56 -478.54 -2.66 -17.72 16 18 C 0.13 2.29 5.67 86.38 0.49 2.78 16 19 C -0.11 -0.78 5.33 30.59 0.16 -0.62 16 20 C -0.13 -0.96 5.22 30.59 0.16 -0.80 16 21 C -0.59 -0.79 6.09 71.98 0.44 -0.35 16 22 S 2.62 25.47 5.97 -56.49 -0.34 25.13 16 23 N -1.24 -3.18 9.43 37.02 0.35 -2.83 16 24 O -1.01 -19.60 18.10 -127.65 -2.31 -21.91 16 25 O -1.01 -19.68 18.10 -127.65 -2.31 -21.99 16 26 C -0.33 -15.02 6.95 23.00 0.16 -14.86 16 27 H 0.30 13.64 8.29 -92.70 -0.77 12.87 16 28 H 0.12 5.23 8.06 -2.91 -0.02 5.21 16 29 H 0.16 5.96 8.06 -2.91 -0.02 5.94 16 30 H 0.42 10.71 8.72 -92.70 -0.81 9.90 16 31 H 0.41 5.08 8.49 -92.71 -0.79 4.29 16 32 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.05 1.14 8.14 -2.38 -0.02 1.12 16 34 H 0.10 0.37 8.14 -2.39 -0.02 0.35 16 35 H 0.10 0.35 8.14 -2.39 -0.02 0.33 16 36 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.08 0.73 8.14 -2.38 -0.02 0.71 16 38 H 0.17 -0.74 8.14 -2.39 -0.02 -0.76 16 39 H 0.17 -0.76 8.14 -2.39 -0.02 -0.78 16 40 H 0.43 -2.05 8.83 -96.74 -0.85 -2.90 16 41 H 0.42 1.04 8.96 -96.75 -0.87 0.17 16 42 H 0.12 5.09 4.43 -2.91 -0.01 5.08 16 Total: -1.00 -90.06 367.30 -5.24 -95.30 By element: Atomic # 1 Polarization: 20.70 SS G_CDS: -2.29 Total: 18.41 kcal Atomic # 6 Polarization: 0.65 SS G_CDS: 5.67 Total: 6.32 kcal Atomic # 7 Polarization: -111.64 SS G_CDS: -5.27 Total: -116.92 kcal Atomic # 8 Polarization: -64.83 SS G_CDS: -4.68 Total: -69.51 kcal Atomic # 14 Polarization: 39.59 SS G_CDS: 1.68 Total: 41.26 kcal Atomic # 16 Polarization: 25.47 SS G_CDS: -0.34 Total: 25.13 kcal Total: -90.06 -5.24 -95.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001311074651.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.708 kcal (2) G-P(sol) polarization free energy of solvation -90.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds