Wall clock time and date at job start Wed Apr 1 2020 01:00:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.33387 * 125.20287 * 2 1 4 4 C 1.38427 * 114.91991 * 179.75128 * 3 2 1 5 5 C 1.50701 * 122.53601 * 180.22725 * 4 3 2 6 6 N 1.46897 * 109.47368 * 90.00297 * 5 4 3 7 7 C 1.46906 * 110.99986 * 66.04247 * 6 5 4 8 8 C 1.46896 * 110.99948 * 189.99617 * 6 5 4 9 9 C 1.53011 * 109.47047 * 169.99889 * 8 6 5 10 10 N 1.46499 * 109.46905 * 179.97438 * 9 8 6 11 11 C 1.46505 * 119.99572 * 90.00473 * 10 9 8 12 12 C 1.34771 * 120.00229 * 269.99676 * 10 9 8 13 13 O 1.21285 * 119.99689 * 0.02562 * 12 10 9 14 14 C 1.50702 * 120.00083 * 180.02562 * 12 10 9 15 15 S 1.81002 * 109.47110 * 180.02562 * 14 12 10 16 16 C 1.76196 * 100.00036 * 180.02562 * 15 14 12 17 17 H 1.08004 * 120.00197 * 0.02562 * 16 15 14 18 18 C 1.38800 * 120.00010 * 180.02562 * 16 15 14 19 19 N 1.31629 * 120.00063 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99767 * 180.02562 * 18 16 15 21 21 H 1.48493 * 109.47596 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.47559 * 120.00056 * 20 18 16 23 23 H 1.48500 * 109.46932 * 239.99772 * 20 18 16 24 24 C 1.33381 * 114.92374 * 0.25034 * 4 3 2 25 25 S 1.75886 * 125.20508 * 180.13454 * 2 1 3 26 26 H 1.08999 * 109.46692 * 90.00514 * 1 2 3 27 27 H 1.09004 * 109.46845 * 210.00031 * 1 2 3 28 28 H 1.08991 * 109.47544 * 330.00173 * 1 2 3 29 29 H 1.08002 * 122.54190 * 0.02679 * 3 2 1 30 30 H 1.09004 * 109.47116 * 210.00086 * 5 4 3 31 31 H 1.08997 * 109.47111 * 329.99678 * 5 4 3 32 32 H 1.08994 * 109.47217 * 60.00139 * 7 6 5 33 33 H 1.09004 * 109.47143 * 180.02562 * 7 6 5 34 34 H 1.08998 * 109.46829 * 300.00195 * 7 6 5 35 35 H 1.08997 * 109.47451 * 289.99905 * 8 6 5 36 36 H 1.09004 * 109.47411 * 50.00149 * 8 6 5 37 37 H 1.08997 * 109.47008 * 300.00287 * 9 8 6 38 38 H 1.09004 * 109.46802 * 59.99888 * 9 8 6 39 39 H 1.08997 * 109.47290 * 90.00068 * 11 10 9 40 40 H 1.09002 * 109.46649 * 209.99443 * 11 10 9 41 41 H 1.08996 * 109.47328 * 329.98998 * 11 10 9 42 42 H 1.08999 * 109.47150 * 300.00392 * 14 12 10 43 43 H 1.08998 * 109.47142 * 60.00363 * 14 12 10 44 44 H 0.96999 * 120.00060 * 180.02562 * 19 18 16 45 45 H 1.07994 * 125.20771 * 180.02562 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2759 1.0899 0.0000 4 6 3.6379 0.8428 0.0054 5 6 4.6622 1.9482 0.0114 6 7 4.9892 2.3055 1.3982 7 6 5.6681 1.1962 2.0815 8 6 5.7991 3.5299 1.4494 9 6 5.9095 4.0081 2.8987 10 7 6.7177 5.2289 2.9498 11 6 6.0743 6.5391 2.8243 12 6 8.0531 5.1467 3.1124 13 8 8.5857 4.0620 3.2160 14 6 8.8844 6.4026 3.1656 15 16 10.6262 5.9641 3.3891 16 6 11.3455 7.5724 3.4169 17 1 10.7192 8.4459 3.3111 18 6 12.7169 7.7167 3.5747 19 7 13.4801 6.6521 3.7041 20 14 13.4792 9.4217 3.6048 21 1 12.4140 10.4433 3.4414 22 1 14.1721 9.6315 4.9014 23 1 14.4580 9.5460 2.4948 24 6 3.9751 -0.4477 0.0046 25 16 2.5210 -1.4372 -0.0034 26 1 -0.3633 -0.0001 -1.0277 27 1 -0.3633 -0.8900 0.5139 28 1 -0.3634 0.8899 0.5137 29 1 1.8669 2.0895 0.0004 30 1 5.5642 1.6105 -0.4991 31 1 4.2586 2.8203 -0.5030 32 1 6.5920 0.9563 1.5553 33 1 5.8984 1.4873 3.1064 34 1 5.0172 0.3219 2.0899 35 1 6.7953 3.3233 1.0582 36 1 5.3253 4.3045 0.8464 37 1 4.9134 4.2147 3.2900 38 1 6.3833 3.2335 3.5018 39 1 5.7930 6.9019 3.8129 40 1 6.7683 7.2420 2.3633 41 1 5.1831 6.4483 2.2034 42 1 8.7661 6.9563 2.2342 43 1 8.5551 7.0212 4.0004 44 1 14.4385 6.7529 3.8147 45 1 4.9862 -0.8271 0.0087 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319978356.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:00:10 Heat of formation + Delta-G solvation = 4.616607 kcal Electronic energy + Delta-G solvation = -24184.123929 eV Core-core repulsion = 20647.889936 eV Total energy + Delta-G solvation = -3536.233993 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 342.118 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.67452 -39.06140 -36.98527 -35.18101 -32.63168 -32.43589 -30.61726 -28.46039 -27.97454 -27.05909 -26.50451 -25.51884 -24.46981 -21.98699 -21.09854 -19.30054 -19.04358 -17.67828 -17.34349 -16.74681 -16.19793 -15.86621 -15.48719 -15.22055 -14.90283 -14.80942 -14.23383 -14.12833 -13.82125 -13.56919 -13.51787 -13.17415 -12.94806 -12.82812 -12.78686 -12.54430 -12.36517 -12.33304 -12.15816 -11.98007 -11.79787 -11.69989 -11.49478 -11.07863 -11.02350 -10.94345 -10.89262 -10.74375 -9.80179 -9.38003 -9.08081 -8.87899 -8.71513 -8.63425 -8.38928 -8.22755 -6.50791 -6.22465 -3.92950 0.71133 1.35040 1.70685 2.36876 2.92908 3.05014 3.20848 3.25442 3.30449 3.57797 4.01867 4.19620 4.40657 4.70843 4.77830 4.86940 4.92535 5.00158 5.09747 5.12607 5.13123 5.14595 5.16401 5.27806 5.31894 5.39513 5.44036 5.50728 5.52392 5.55111 5.58846 5.70976 5.80602 5.84179 5.85755 5.91015 6.02084 6.12743 6.13263 6.24214 6.57612 6.81362 6.89325 7.53493 7.59339 8.34710 8.55666 9.22998 10.85037 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.031250 B = 0.001718 C = 0.001667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.795134 B =16295.545609 C =16790.178849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.182 4.182 3 C -0.121 4.121 4 C -0.084 4.084 5 C 0.112 3.888 6 N -0.533 5.533 7 C 0.017 3.983 8 C 0.040 3.960 9 C 0.122 3.878 10 N -0.625 5.625 11 C 0.081 3.919 12 C 0.532 3.468 13 O -0.516 6.516 14 C -0.150 4.150 15 S -0.063 6.063 16 C -0.534 4.534 17 H 0.073 0.927 18 C 0.073 3.927 19 N -0.867 5.867 20 Si 0.919 3.081 21 H -0.272 1.272 22 H -0.280 1.280 23 H -0.280 1.280 24 C -0.210 4.210 25 S 0.087 5.913 26 H 0.073 0.927 27 H 0.067 0.933 28 H 0.076 0.924 29 H 0.139 0.861 30 H 0.045 0.955 31 H 0.084 0.916 32 H 0.029 0.971 33 H 0.073 0.927 34 H 0.069 0.931 35 H 0.043 0.957 36 H 0.074 0.926 37 H 0.081 0.919 38 H 0.084 0.916 39 H 0.055 0.945 40 H 0.074 0.926 41 H 0.068 0.932 42 H 0.089 0.911 43 H 0.089 0.911 44 H 0.268 0.732 45 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.056 -10.686 -8.055 30.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.299 4.299 3 C -0.151 4.151 4 C -0.097 4.097 5 C -0.018 4.018 6 N -0.257 5.257 7 C -0.131 4.131 8 C -0.089 4.089 9 C -0.001 4.001 10 N -0.361 5.361 11 C -0.063 4.063 12 C 0.320 3.680 13 O -0.390 6.390 14 C -0.300 4.300 15 S 0.164 5.836 16 C -0.683 4.683 17 H 0.091 0.909 18 C -0.136 4.136 19 N -0.503 5.503 20 Si 0.745 3.255 21 H -0.196 1.196 22 H -0.206 1.206 23 H -0.206 1.206 24 C -0.346 4.346 25 S 0.351 5.649 26 H 0.091 0.909 27 H 0.086 0.914 28 H 0.095 0.905 29 H 0.157 0.843 30 H 0.063 0.937 31 H 0.102 0.898 32 H 0.048 0.952 33 H 0.092 0.908 34 H 0.088 0.912 35 H 0.062 0.938 36 H 0.092 0.908 37 H 0.099 0.901 38 H 0.102 0.898 39 H 0.074 0.926 40 H 0.093 0.907 41 H 0.087 0.913 42 H 0.107 0.893 43 H 0.108 0.892 44 H 0.078 0.922 45 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -26.802 -13.837 -7.629 31.113 hybrid contribution 0.990 3.721 -0.538 3.887 sum -25.811 -10.116 -8.167 28.901 Atomic orbital electron populations 1.20321 0.87885 1.03164 1.02636 1.24436 0.99898 0.95621 1.09945 1.19923 0.92193 0.99293 1.03646 1.18723 0.94552 0.93792 1.02609 1.20757 0.95550 0.95858 0.89608 1.61935 1.44911 1.04182 1.14700 1.22524 0.96865 0.94101 0.99588 1.22501 0.96318 0.91761 0.98323 1.21313 0.95458 0.87404 0.95957 1.47850 1.06858 1.06802 1.74599 1.21774 0.98413 0.84472 1.01612 1.20373 0.81312 0.91174 0.75145 1.90689 1.70911 1.29560 1.47834 1.23556 1.03747 0.98005 1.04737 1.85394 0.91364 1.11761 1.95119 1.22902 0.95075 0.92426 1.57853 0.90883 1.24995 0.96079 0.97979 0.94554 1.70028 1.05439 1.28596 1.46217 0.86116 0.79034 0.82428 0.77914 1.19609 1.20553 1.20580 1.25465 1.01769 0.96226 1.11151 1.84232 0.97053 1.09826 1.73790 0.90855 0.91409 0.90481 0.84312 0.93730 0.89810 0.95248 0.90811 0.91206 0.93840 0.90768 0.90091 0.89773 0.92644 0.90703 0.91347 0.89279 0.89241 0.92244 0.82126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.44 10.38 36.00 0.37 -0.07 16 2 C -0.18 -1.44 6.51 -36.00 -0.23 -1.68 16 3 C -0.12 -1.03 9.85 -41.21 -0.41 -1.44 16 4 C -0.08 -0.77 4.79 -106.25 -0.51 -1.28 16 5 C 0.11 1.05 5.23 -4.98 -0.03 1.02 16 6 N -0.53 -5.61 4.75 -244.36 -1.16 -6.78 16 7 C 0.02 0.19 9.01 60.07 0.54 0.73 16 8 C 0.04 0.46 5.28 -3.82 -0.02 0.44 16 9 C 0.12 1.51 5.34 -4.04 -0.02 1.49 16 10 N -0.62 -8.79 2.87 -181.56 -0.52 -9.31 16 11 C 0.08 0.83 10.24 59.85 0.61 1.44 16 12 C 0.53 10.12 7.69 -10.99 -0.08 10.03 16 13 O -0.52 -11.73 15.44 5.55 0.09 -11.65 16 14 C -0.15 -3.05 4.71 36.01 0.17 -2.88 16 15 S -0.06 -1.72 20.57 -107.50 -2.21 -3.93 16 16 C -0.53 -15.22 9.50 30.94 0.29 -14.93 16 17 H 0.07 1.97 7.80 -52.48 -0.41 1.56 16 18 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 19 N -0.87 -26.18 13.22 55.49 0.73 -25.45 16 20 Si 0.92 21.38 29.55 -169.99 -5.02 16.36 16 21 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 22 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 23 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 24 C -0.21 -1.84 9.36 29.04 0.27 -1.57 16 25 S 0.09 0.70 23.33 -107.50 -2.51 -1.81 16 26 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 29 H 0.14 1.04 8.06 -52.49 -0.42 0.61 16 30 H 0.04 0.43 8.10 -51.93 -0.42 0.01 16 31 H 0.08 0.70 7.92 -51.93 -0.41 0.29 16 32 H 0.03 0.34 8.14 -51.93 -0.42 -0.09 16 33 H 0.07 0.84 6.30 -51.93 -0.33 0.51 16 34 H 0.07 0.70 6.23 -51.93 -0.32 0.38 16 35 H 0.04 0.62 8.12 -51.93 -0.42 0.19 16 36 H 0.07 0.76 7.93 -51.93 -0.41 0.35 16 37 H 0.08 0.84 8.07 -51.93 -0.42 0.42 16 38 H 0.08 1.21 5.75 -51.93 -0.30 0.91 16 39 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.07 0.78 6.44 -51.93 -0.33 0.45 16 41 H 0.07 0.53 8.07 -51.93 -0.42 0.11 16 42 H 0.09 1.67 7.40 -51.92 -0.38 1.29 16 43 H 0.09 1.70 8.11 -51.92 -0.42 1.27 16 44 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 45 H 0.16 1.26 8.06 -52.49 -0.42 0.84 16 LS Contribution 395.83 15.07 5.97 5.97 Total: -1.00 -34.05 395.83 -10.87 -44.92 By element: Atomic # 1 Polarization: 5.46 SS G_CDS: -7.10 Total: -1.63 kcal Atomic # 6 Polarization: -7.56 SS G_CDS: 0.87 Total: -6.69 kcal Atomic # 7 Polarization: -40.58 SS G_CDS: -0.95 Total: -41.53 kcal Atomic # 8 Polarization: -11.73 SS G_CDS: 0.09 Total: -11.65 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 16 Polarization: -1.02 SS G_CDS: -4.72 Total: -5.74 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -34.05 -10.87 -44.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319978356.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.536 kcal (2) G-P(sol) polarization free energy of solvation -34.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.920 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds