Wall clock time and date at job start Wed Apr 1 2020 01:00:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.33387 * 125.20287 * 2 1 4 4 C 1.38427 * 114.91991 * 179.75128 * 3 2 1 5 5 C 1.50701 * 122.53601 * 180.22725 * 4 3 2 6 6 N 1.46897 * 109.47368 * 90.00297 * 5 4 3 7 7 C 1.46906 * 110.99986 * 66.04247 * 6 5 4 8 8 C 1.46896 * 110.99948 * 189.99617 * 6 5 4 9 9 C 1.53011 * 109.47047 * 169.99889 * 8 6 5 10 10 N 1.46499 * 109.46905 * 179.97438 * 9 8 6 11 11 C 1.46505 * 119.99572 * 90.00473 * 10 9 8 12 12 C 1.34771 * 120.00229 * 269.99676 * 10 9 8 13 13 O 1.21285 * 119.99689 * 0.02562 * 12 10 9 14 14 C 1.50702 * 120.00083 * 180.02562 * 12 10 9 15 15 S 1.81002 * 109.47110 * 180.02562 * 14 12 10 16 16 C 1.76196 * 100.00036 * 180.02562 * 15 14 12 17 17 H 1.08004 * 120.00197 * 0.02562 * 16 15 14 18 18 C 1.38800 * 120.00010 * 180.02562 * 16 15 14 19 19 N 1.31629 * 120.00063 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99767 * 180.02562 * 18 16 15 21 21 H 1.48493 * 109.47596 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.47559 * 120.00056 * 20 18 16 23 23 H 1.48500 * 109.46932 * 239.99772 * 20 18 16 24 24 C 1.33381 * 114.92374 * 0.25034 * 4 3 2 25 25 S 1.75886 * 125.20508 * 180.13454 * 2 1 3 26 26 H 1.08999 * 109.46692 * 90.00514 * 1 2 3 27 27 H 1.09004 * 109.46845 * 210.00031 * 1 2 3 28 28 H 1.08991 * 109.47544 * 330.00173 * 1 2 3 29 29 H 1.08002 * 122.54190 * 0.02679 * 3 2 1 30 30 H 1.09004 * 109.47116 * 210.00086 * 5 4 3 31 31 H 1.08997 * 109.47111 * 329.99678 * 5 4 3 32 32 H 1.08994 * 109.47217 * 60.00139 * 7 6 5 33 33 H 1.09004 * 109.47143 * 180.02562 * 7 6 5 34 34 H 1.08998 * 109.46829 * 300.00195 * 7 6 5 35 35 H 1.08997 * 109.47451 * 289.99905 * 8 6 5 36 36 H 1.09004 * 109.47411 * 50.00149 * 8 6 5 37 37 H 1.08997 * 109.47008 * 300.00287 * 9 8 6 38 38 H 1.09004 * 109.46802 * 59.99888 * 9 8 6 39 39 H 1.08997 * 109.47290 * 90.00068 * 11 10 9 40 40 H 1.09002 * 109.46649 * 209.99443 * 11 10 9 41 41 H 1.08996 * 109.47328 * 329.98998 * 11 10 9 42 42 H 1.08999 * 109.47150 * 300.00392 * 14 12 10 43 43 H 1.08998 * 109.47142 * 60.00363 * 14 12 10 44 44 H 0.96999 * 120.00060 * 180.02562 * 19 18 16 45 45 H 1.07994 * 125.20771 * 180.02562 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2759 1.0899 0.0000 4 6 3.6379 0.8428 0.0054 5 6 4.6622 1.9482 0.0114 6 7 4.9892 2.3055 1.3982 7 6 5.6681 1.1962 2.0815 8 6 5.7991 3.5299 1.4494 9 6 5.9095 4.0081 2.8987 10 7 6.7177 5.2289 2.9498 11 6 6.0743 6.5391 2.8243 12 6 8.0531 5.1467 3.1124 13 8 8.5857 4.0620 3.2160 14 6 8.8844 6.4026 3.1656 15 16 10.6262 5.9641 3.3891 16 6 11.3455 7.5724 3.4169 17 1 10.7192 8.4459 3.3111 18 6 12.7169 7.7167 3.5747 19 7 13.4801 6.6521 3.7041 20 14 13.4792 9.4217 3.6048 21 1 12.4140 10.4433 3.4414 22 1 14.1721 9.6315 4.9014 23 1 14.4580 9.5460 2.4948 24 6 3.9751 -0.4477 0.0046 25 16 2.5210 -1.4372 -0.0034 26 1 -0.3633 -0.0001 -1.0277 27 1 -0.3633 -0.8900 0.5139 28 1 -0.3634 0.8899 0.5137 29 1 1.8669 2.0895 0.0004 30 1 5.5642 1.6105 -0.4991 31 1 4.2586 2.8203 -0.5030 32 1 6.5920 0.9563 1.5553 33 1 5.8984 1.4873 3.1064 34 1 5.0172 0.3219 2.0899 35 1 6.7953 3.3233 1.0582 36 1 5.3253 4.3045 0.8464 37 1 4.9134 4.2147 3.2900 38 1 6.3833 3.2335 3.5018 39 1 5.7930 6.9019 3.8129 40 1 6.7683 7.2420 2.3633 41 1 5.1831 6.4483 2.2034 42 1 8.7661 6.9563 2.2342 43 1 8.5551 7.0212 4.0004 44 1 14.4385 6.7529 3.8147 45 1 4.9862 -0.8271 0.0087 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319978356.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:00:09 Heat of formation + Delta-G solvation = -16.698895 kcal Electronic energy + Delta-G solvation = -24185.048239 eV Core-core repulsion = 20647.889936 eV Total energy + Delta-G solvation = -3537.158303 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 342.118 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.94277 -39.88919 -37.88374 -36.39036 -34.59206 -33.28349 -31.81413 -29.68484 -28.82747 -27.71855 -27.69528 -27.36134 -25.47340 -22.83926 -21.88873 -20.60662 -19.83720 -19.51997 -18.11856 -17.98676 -17.37808 -16.93154 -16.88445 -16.50381 -16.22452 -16.03989 -15.54707 -15.07113 -14.70921 -14.64664 -14.36958 -14.29515 -14.09952 -14.06695 -13.58893 -13.53076 -13.41758 -13.23223 -13.16000 -13.00378 -12.91306 -12.79630 -12.71395 -12.59885 -12.42599 -12.23354 -11.88700 -11.68602 -11.57758 -11.16465 -10.91263 -10.26815 -9.75700 -9.55858 -9.42758 -9.22105 -8.68228 -8.35410 -6.13787 0.07248 0.73261 1.07244 1.25398 1.41123 1.45450 1.55335 1.57406 1.71971 2.11734 2.26951 2.98907 3.09456 3.27922 3.71541 3.78097 3.97020 4.03364 4.12508 4.22012 4.25907 4.35178 4.36838 4.42995 4.48678 4.49507 4.54896 4.61031 4.64097 4.71116 4.77377 4.79005 4.81632 4.91641 4.97198 5.04234 5.13161 5.24716 5.41442 5.47281 5.53736 5.60624 5.94849 5.96274 6.19328 6.27672 7.05946 7.14167 8.74132 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.031250 B = 0.001718 C = 0.001667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.795134 B =16295.545609 C =16790.178849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.182 4.182 3 C -0.134 4.134 4 C -0.090 4.090 5 C 0.113 3.887 6 N -0.527 5.527 7 C 0.022 3.978 8 C 0.050 3.950 9 C 0.123 3.877 10 N -0.610 5.610 11 C 0.071 3.929 12 C 0.529 3.471 13 O -0.566 6.566 14 C -0.123 4.123 15 S -0.156 6.156 16 C -0.544 4.544 17 H 0.084 0.916 18 C 0.013 3.987 19 N -0.912 5.912 20 Si 1.000 3.000 21 H -0.255 1.255 22 H -0.274 1.274 23 H -0.274 1.274 24 C -0.224 4.224 25 S 0.088 5.912 26 H 0.084 0.916 27 H 0.073 0.927 28 H 0.087 0.913 29 H 0.151 0.849 30 H 0.036 0.964 31 H 0.098 0.902 32 H 0.015 0.985 33 H 0.065 0.935 34 H 0.078 0.922 35 H 0.010 0.990 36 H 0.096 0.904 37 H 0.112 0.888 38 H 0.059 0.941 39 H 0.071 0.929 40 H 0.074 0.926 41 H 0.102 0.898 42 H 0.108 0.892 43 H 0.107 0.893 44 H 0.271 0.729 45 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.874 -8.562 -8.571 32.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.299 4.299 3 C -0.164 4.164 4 C -0.103 4.103 5 C -0.016 4.016 6 N -0.251 5.251 7 C -0.127 4.127 8 C -0.080 4.080 9 C 0.000 4.000 10 N -0.344 5.344 11 C -0.071 4.071 12 C 0.316 3.684 13 O -0.444 6.444 14 C -0.274 4.274 15 S 0.071 5.929 16 C -0.692 4.692 17 H 0.102 0.898 18 C -0.192 4.192 19 N -0.549 5.549 20 Si 0.821 3.179 21 H -0.179 1.179 22 H -0.199 1.199 23 H -0.200 1.200 24 C -0.360 4.360 25 S 0.352 5.648 26 H 0.102 0.898 27 H 0.092 0.908 28 H 0.106 0.894 29 H 0.169 0.831 30 H 0.055 0.945 31 H 0.117 0.883 32 H 0.034 0.966 33 H 0.084 0.916 34 H 0.096 0.904 35 H 0.028 0.972 36 H 0.115 0.885 37 H 0.130 0.870 38 H 0.078 0.922 39 H 0.090 0.910 40 H 0.093 0.907 41 H 0.121 0.879 42 H 0.127 0.873 43 H 0.125 0.875 44 H 0.080 0.920 45 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -29.687 -11.696 -8.157 32.934 hybrid contribution 1.690 2.993 -0.403 3.461 sum -27.997 -8.703 -8.559 30.543 Atomic orbital electron populations 1.20426 0.86087 1.03985 1.03587 1.24812 1.01149 0.95127 1.08818 1.20071 0.91890 1.00113 1.04280 1.18785 0.94920 0.93667 1.02976 1.20790 0.95444 0.96659 0.88755 1.61976 1.43976 1.03649 1.15522 1.22464 0.96509 0.94672 0.99010 1.22387 0.94994 0.92816 0.97763 1.21429 0.96016 0.86167 0.96346 1.47838 1.05169 1.09123 1.72273 1.22125 0.99378 0.82156 1.03429 1.20194 0.82971 0.89816 0.75387 1.90676 1.72323 1.30841 1.50558 1.23374 0.98590 0.99098 1.06319 1.85597 0.97993 1.13711 1.95558 1.23232 0.95755 0.92426 1.57800 0.89828 1.26144 0.96608 1.02711 0.93741 1.70195 1.05866 1.31443 1.47350 0.84892 0.78199 0.76704 0.78072 1.17881 1.19949 1.19965 1.25595 1.02304 0.96568 1.11563 1.84217 0.96841 1.10104 1.73623 0.89762 0.90819 0.89417 0.83119 0.94527 0.88347 0.96650 0.91605 0.90362 0.97166 0.88531 0.86955 0.92230 0.90998 0.90686 0.87903 0.87340 0.87456 0.92017 0.82001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.70 10.38 71.24 0.74 0.04 16 2 C -0.18 -2.57 6.51 24.59 0.16 -2.41 16 3 C -0.13 -2.06 9.85 21.22 0.21 -1.85 16 4 C -0.09 -1.57 4.79 -20.92 -0.10 -1.67 16 5 C 0.11 2.00 5.23 85.56 0.45 2.45 16 6 N -0.53 -10.61 4.75 -927.03 -4.41 -15.02 16 7 C 0.02 0.48 9.01 127.69 1.15 1.63 16 8 C 0.05 1.09 5.28 86.31 0.46 1.54 16 9 C 0.12 2.88 5.34 86.38 0.46 3.34 16 10 N -0.61 -16.06 2.87 -846.73 -2.43 -18.50 16 11 C 0.07 1.18 10.24 127.77 1.31 2.49 16 12 C 0.53 20.09 7.69 87.66 0.67 20.76 16 13 O -0.57 -26.79 15.44 -3.05 -0.05 -26.83 16 14 C -0.12 -4.93 4.71 71.24 0.34 -4.60 16 15 S -0.16 -8.75 20.57 -56.49 -1.16 -9.91 16 16 C -0.54 -31.17 9.50 67.95 0.65 -30.52 16 17 H 0.08 4.43 7.80 -2.91 -0.02 4.41 16 18 C 0.01 0.72 5.49 84.86 0.47 1.18 16 19 N -0.91 -56.32 13.22 21.65 0.29 -56.03 16 20 Si 1.00 43.59 29.55 68.60 2.03 45.62 16 21 H -0.26 -10.33 7.11 99.48 0.71 -9.63 16 22 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 23 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 24 C -0.22 -3.86 9.36 66.72 0.62 -3.24 16 25 S 0.09 1.34 23.33 -56.49 -1.32 0.03 16 26 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 27 H 0.07 0.55 8.14 -2.38 -0.02 0.53 16 28 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.15 1.88 8.06 -2.91 -0.02 1.86 16 30 H 0.04 0.71 8.10 -2.38 -0.02 0.69 16 31 H 0.10 1.44 7.92 -2.39 -0.02 1.43 16 32 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 33 H 0.07 1.55 6.30 -2.38 -0.02 1.54 16 34 H 0.08 1.58 6.23 -2.39 -0.01 1.57 16 35 H 0.01 0.29 8.12 -2.39 -0.02 0.27 16 36 H 0.10 1.69 7.93 -2.38 -0.02 1.67 16 37 H 0.11 1.97 8.07 -2.39 -0.02 1.95 16 38 H 0.06 1.73 5.75 -2.38 -0.01 1.71 16 39 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.07 1.30 6.44 -2.39 -0.02 1.28 16 41 H 0.10 1.08 8.07 -2.39 -0.02 1.06 16 42 H 0.11 3.92 7.40 -2.40 -0.02 3.90 16 43 H 0.11 3.91 8.11 -2.40 -0.02 3.89 16 44 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 45 H 0.16 2.62 8.06 -2.91 -0.02 2.59 16 Total: -1.00 -76.92 395.83 1.50 -75.42 By element: Atomic # 1 Polarization: 15.12 SS G_CDS: 0.97 Total: 16.09 kcal Atomic # 6 Polarization: -18.43 SS G_CDS: 7.58 Total: -10.85 kcal Atomic # 7 Polarization: -83.00 SS G_CDS: -6.55 Total: -89.55 kcal Atomic # 8 Polarization: -26.79 SS G_CDS: -0.05 Total: -26.83 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.62 kcal Atomic # 16 Polarization: -7.41 SS G_CDS: -2.48 Total: -9.89 kcal Total: -76.92 1.50 -75.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319978356.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.721 kcal (2) G-P(sol) polarization free energy of solvation -76.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds