Wall clock time and date at job start Wed Apr 1 2020 01:30:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.29435 * 124.80216 * 2 1 4 4 C 1.30943 * 117.36476 * 179.97438 * 3 2 1 5 5 C 1.35664 * 114.18826 * 0.02562 * 4 3 2 6 6 C 1.46682 * 126.12323 * 180.02562 * 5 4 3 7 7 O 1.21680 * 120.00692 * 359.97438 * 6 5 4 8 8 N 1.34783 * 119.99500 * 179.97438 * 6 5 4 9 9 C 1.46497 * 119.99638 * 179.97438 * 8 6 5 10 10 C 1.53001 * 109.46900 * 180.02562 * 9 8 6 11 11 H 1.08999 * 109.47164 * 60.00014 * 10 9 8 12 12 O 1.42903 * 109.47171 * 299.99748 * 10 9 8 13 13 C 1.53003 * 109.47376 * 180.02562 * 10 9 8 14 14 N 1.46900 * 109.47407 * 184.99739 * 13 10 9 15 15 C 1.46902 * 110.99888 * 179.97438 * 14 13 10 16 16 C 1.50696 * 109.46722 * 180.02562 * 15 14 13 17 17 O 1.21298 * 120.00202 * 359.97438 * 16 15 14 18 18 N 1.34781 * 119.99889 * 180.02562 * 16 15 14 19 19 C 1.37101 * 119.99834 * 180.02562 * 18 16 15 20 20 H 1.08001 * 120.00344 * 359.97438 * 19 18 16 21 21 C 1.38954 * 119.99671 * 180.02562 * 19 18 16 22 22 N 1.31413 * 119.99942 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 119.99837 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.46936 * 60.00095 * 23 21 19 25 25 H 1.48499 * 109.46946 * 180.02562 * 23 21 19 26 26 H 1.48496 * 109.47188 * 299.99828 * 23 21 19 27 27 S 1.70948 * 124.80945 * 180.31371 * 2 1 3 28 28 H 1.09001 * 109.47499 * 89.97944 * 1 2 3 29 29 H 1.09008 * 109.47027 * 209.97493 * 1 2 3 30 30 H 1.09000 * 109.47197 * 329.97252 * 1 2 3 31 31 H 1.08001 * 122.90223 * 179.97438 * 4 3 2 32 32 H 0.96996 * 120.00052 * 0.02562 * 8 6 5 33 33 H 1.08999 * 109.47200 * 60.00094 * 9 8 6 34 34 H 1.08997 * 109.47487 * 300.00148 * 9 8 6 35 35 H 0.96700 * 114.00311 * 300.00378 * 12 10 9 36 36 H 1.09005 * 109.46682 * 304.99749 * 13 10 9 37 37 H 1.08999 * 109.47221 * 64.99915 * 13 10 9 38 38 H 1.00897 * 111.00248 * 303.95482 * 14 13 10 39 39 H 1.08994 * 109.47353 * 299.99985 * 15 14 13 40 40 H 1.08992 * 109.46815 * 60.00343 * 15 14 13 41 41 H 0.96995 * 119.99740 * 0.02562 * 18 16 15 42 42 H 0.96999 * 119.99954 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2457 1.0628 0.0000 4 6 3.5441 0.8933 0.0005 5 6 3.9351 -0.4057 0.0004 6 6 5.3189 -0.8923 0.0015 7 8 6.2425 -0.1001 0.0020 8 7 5.5674 -2.2170 0.0018 9 6 6.9494 -2.7030 0.0022 10 6 6.9519 -4.2330 0.0019 11 1 6.4391 -4.5970 -0.8884 12 8 6.2786 -4.7108 1.1683 13 6 8.3953 -4.7407 0.0030 14 7 8.3996 -6.2047 -0.1180 15 6 9.7720 -6.7286 -0.1209 16 6 9.7361 -8.2299 -0.2468 17 8 8.6720 -8.8067 -0.3258 18 7 10.8865 -8.9318 -0.2706 19 6 10.8539 -10.2976 -0.3857 20 1 9.9065 -10.8111 -0.4568 21 6 12.0399 -11.0212 -0.4097 22 7 13.1927 -10.3964 -0.3226 23 14 11.9955 -12.8822 -0.5657 24 1 11.3211 -13.2565 -1.8347 25 1 13.3828 -13.4120 -0.5668 26 1 11.2475 -13.4573 0.5809 27 16 2.4828 -1.4036 -0.0077 28 1 -0.3634 0.0004 -1.0276 29 1 -0.3633 -0.8903 0.5135 30 1 -0.3633 0.8897 0.5143 31 1 4.2432 1.7165 0.0002 32 1 4.8312 -2.8486 0.0010 33 1 7.4624 -2.3387 0.8923 34 1 7.4629 -2.3390 -0.8876 35 1 6.6813 -4.4249 1.9997 36 1 8.9343 -4.3050 -0.8383 37 1 8.8813 -4.4518 0.9349 38 1 7.8515 -6.6297 0.6148 39 1 10.3202 -6.3068 -0.9633 40 1 10.2679 -6.4534 0.8098 41 1 11.7374 -8.4706 -0.2063 42 1 14.0206 -10.9016 -0.3390 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320205140.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:30:35 Heat of formation + Delta-G solvation = -79.435581 kcal Electronic energy + Delta-G solvation = -25530.307896 eV Core-core repulsion = 21444.135912 eV Total energy + Delta-G solvation = -4086.171984 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.119 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.64611 -39.68177 -38.55099 -37.90350 -35.04289 -34.60779 -33.80199 -32.87022 -31.26283 -30.70105 -29.21214 -27.22816 -25.26588 -24.56757 -23.38152 -22.02192 -21.94645 -20.08638 -19.27937 -18.89508 -17.91685 -17.66262 -16.89776 -16.66291 -16.16119 -15.85622 -15.67928 -15.35955 -15.07705 -14.82923 -14.56880 -14.49107 -14.24203 -13.97128 -13.79616 -13.49298 -13.23510 -13.01562 -12.97934 -12.87961 -12.45043 -12.08912 -11.86938 -11.60114 -11.52900 -11.22066 -11.02145 -10.73897 -10.45233 -10.41676 -10.22845 -10.18217 -10.05014 -9.59662 -9.51148 -9.37893 -8.49623 -8.12512 -7.97470 -6.42752 -3.83723 -0.27781 0.62792 1.03982 1.96220 2.58330 2.74527 3.19564 3.25338 3.29737 3.53858 3.88067 3.92413 4.11252 4.20694 4.34478 4.40925 4.67459 4.73071 4.78279 4.82196 4.85497 4.88408 5.07339 5.20702 5.25859 5.26753 5.33085 5.52931 5.58249 5.70753 5.83320 5.88071 5.93277 6.23373 6.92302 7.10391 7.10627 7.31911 7.54037 7.62551 7.66484 8.04798 8.59944 9.16608 9.52739 10.04248 10.74858 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.032577 B = 0.001484 C = 0.001430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.288683 B =18863.865239 C =19582.297946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.061 3.939 3 N -0.482 5.482 4 C 0.124 3.876 5 C -0.298 4.298 6 C 0.597 3.403 7 O -0.527 6.527 8 N -0.716 5.716 9 C 0.089 3.911 10 C 0.097 3.903 11 H 0.118 0.882 12 O -0.554 6.554 13 C 0.031 3.969 14 N -0.664 5.664 15 C 0.050 3.950 16 C 0.440 3.560 17 O -0.582 6.582 18 N -0.563 5.563 19 C -0.301 4.301 20 H 0.103 0.897 21 C 0.023 3.977 22 N -0.902 5.902 23 Si 0.931 3.069 24 H -0.273 1.273 25 H -0.284 1.284 26 H -0.274 1.274 27 S 0.173 5.827 28 H 0.093 0.907 29 H 0.086 0.914 30 H 0.094 0.906 31 H 0.189 0.811 32 H 0.404 0.596 33 H 0.076 0.924 34 H 0.084 0.916 35 H 0.374 0.626 36 H 0.084 0.916 37 H 0.033 0.967 38 H 0.356 0.644 39 H 0.086 0.914 40 H 0.043 0.957 41 H 0.392 0.608 42 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.162 22.241 2.384 30.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.214 4.214 3 N -0.196 5.196 4 C -0.034 4.034 5 C -0.422 4.422 6 C 0.382 3.618 7 O -0.405 6.405 8 N -0.368 5.368 9 C -0.036 4.036 10 C 0.037 3.963 11 H 0.136 0.864 12 O -0.359 6.359 13 C -0.099 4.099 14 N -0.298 5.298 15 C -0.082 4.082 16 C 0.225 3.775 17 O -0.466 6.466 18 N -0.200 5.200 19 C -0.431 4.431 20 H 0.121 0.879 21 C -0.179 4.179 22 N -0.543 5.543 23 Si 0.758 3.242 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.199 1.199 27 S 0.429 5.571 28 H 0.111 0.889 29 H 0.105 0.895 30 H 0.113 0.887 31 H 0.206 0.794 32 H 0.240 0.760 33 H 0.094 0.906 34 H 0.102 0.898 35 H 0.222 0.778 36 H 0.102 0.898 37 H 0.051 0.949 38 H 0.177 0.823 39 H 0.104 0.896 40 H 0.061 0.939 41 H 0.225 0.775 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -20.945 21.441 1.194 29.997 hybrid contribution 1.677 0.223 1.230 2.092 sum -19.268 21.664 2.424 29.094 Atomic orbital electron populations 1.20575 0.84510 1.04836 1.04492 1.27565 1.02403 0.91066 1.00347 1.66259 1.04791 1.31187 1.17396 1.22212 0.90763 0.95528 0.94857 1.25732 0.97925 0.97968 1.20603 1.16694 0.86068 0.82478 0.76564 1.90859 1.44304 1.55205 1.50084 1.45744 1.09566 1.06260 1.75250 1.22136 0.82538 0.95085 1.03804 1.22264 0.93844 0.89929 0.90245 0.86422 1.86651 1.56733 1.76752 1.15775 1.22529 0.95645 0.90578 1.01177 1.59988 1.12302 1.02529 1.54943 1.21683 0.90143 0.95433 1.00966 1.19782 0.85053 0.87970 0.84681 1.90532 1.29833 1.70983 1.55286 1.41853 1.06787 1.07422 1.63908 1.19668 0.94580 0.81528 1.47278 0.87945 1.25263 0.94625 1.00719 0.97272 1.69604 0.97553 1.36817 1.50335 0.85907 0.77066 0.82072 0.79112 1.19869 1.20973 1.19918 1.84047 0.96351 1.11119 1.65567 0.88905 0.89530 0.88736 0.79425 0.76011 0.90621 0.89769 0.77843 0.89813 0.94855 0.82310 0.89578 0.93869 0.77462 0.91811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.27 10.46 36.00 0.38 0.11 16 2 C 0.06 0.41 7.39 -13.29 -0.10 0.31 16 3 N -0.48 -4.33 10.51 -11.50 -0.12 -4.45 16 4 C 0.12 1.14 11.09 -18.85 -0.21 0.93 16 5 C -0.30 -2.68 6.48 -37.10 -0.24 -2.92 16 6 C 0.60 6.25 7.79 -12.85 -0.10 6.15 16 7 O -0.53 -7.15 16.87 5.21 0.09 -7.07 16 8 N -0.72 -6.11 5.44 -61.62 -0.34 -6.45 16 9 C 0.09 0.73 5.34 -4.04 -0.02 0.71 16 10 C 0.10 0.87 3.29 -26.73 -0.09 0.78 16 11 H 0.12 1.17 8.14 -51.93 -0.42 0.75 16 12 O -0.55 -5.15 12.60 -35.23 -0.44 -5.59 16 13 C 0.03 0.33 5.36 -3.82 -0.02 0.31 16 14 N -0.66 -10.20 6.12 -115.06 -0.70 -10.91 16 15 C 0.05 0.86 6.17 -4.98 -0.03 0.83 16 16 C 0.44 10.32 7.82 -10.99 -0.09 10.24 16 17 O -0.58 -15.82 15.78 5.54 0.09 -15.73 16 18 N -0.56 -14.21 5.29 -10.96 -0.06 -14.27 16 19 C -0.30 -8.39 9.68 -14.93 -0.14 -8.53 16 20 H 0.10 2.99 7.16 -52.49 -0.38 2.61 16 21 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 22 N -0.90 -24.42 13.05 55.50 0.72 -23.70 16 23 Si 0.93 20.98 29.55 -169.99 -5.02 15.96 16 24 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 25 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 26 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 27 S 0.17 1.09 22.31 -107.50 -2.40 -1.30 16 28 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 29 H 0.09 0.13 8.14 -51.92 -0.42 -0.30 16 30 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.19 1.55 8.06 -52.49 -0.42 1.13 16 32 H 0.40 3.00 7.53 -40.82 -0.31 2.69 16 33 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.37 2.37 9.05 45.56 0.41 2.79 16 36 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 38 H 0.36 5.86 7.99 -39.29 -0.31 5.54 16 39 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 40 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.39 9.43 7.90 -40.82 -0.32 9.10 16 42 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 LS Contribution 382.61 15.07 5.77 5.77 Total: -1.00 -35.19 382.61 -7.87 -43.06 By element: Atomic # 1 Polarization: 19.94 SS G_CDS: -4.69 Total: 15.25 kcal Atomic # 6 Polarization: 10.18 SS G_CDS: -0.76 Total: 9.42 kcal Atomic # 7 Polarization: -59.27 SS G_CDS: -0.49 Total: -59.77 kcal Atomic # 8 Polarization: -28.12 SS G_CDS: -0.27 Total: -28.39 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Atomic # 16 Polarization: 1.09 SS G_CDS: -2.40 Total: -1.30 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -35.19 -7.87 -43.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320205140.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.375 kcal (2) G-P(sol) polarization free energy of solvation -35.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds