Wall clock time and date at job start Wed Apr 1 2020 01:30:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 N 1.29424 * 124.80790 * 2 1 4 4 C 1.30939 * 117.36806 * 179.97438 * 3 2 1 5 5 C 1.35667 * 114.19098 * 0.02562 * 4 3 2 6 6 C 1.46679 * 126.13143 * 180.02562 * 5 4 3 7 7 O 1.21685 * 120.00070 * 359.97438 * 6 5 4 8 8 N 1.34779 * 119.99941 * 179.97438 * 6 5 4 9 9 C 1.46494 * 119.99921 * 179.97438 * 8 6 5 10 10 C 1.53003 * 109.47283 * 179.97438 * 9 8 6 11 11 H 1.08999 * 109.47269 * 305.00317 * 10 9 8 12 12 O 1.42903 * 109.46459 * 65.00211 * 10 9 8 13 13 C 1.53001 * 109.47376 * 185.00021 * 10 9 8 14 14 N 1.46898 * 109.46893 * 180.02562 * 13 10 9 15 15 C 1.46900 * 110.99589 * 180.02562 * 14 13 10 16 16 C 1.50705 * 109.47217 * 179.97438 * 15 14 13 17 17 O 1.21294 * 119.99619 * 359.97438 * 16 15 14 18 18 N 1.34772 * 120.00394 * 179.97438 * 16 15 14 19 19 C 1.37097 * 120.00100 * 180.02562 * 18 16 15 20 20 H 1.07996 * 119.99991 * 0.02562 * 19 18 16 21 21 C 1.38953 * 119.99700 * 179.97438 * 19 18 16 22 22 N 1.31405 * 120.00117 * 359.97438 * 21 19 18 23 23 Si 1.86795 * 119.99605 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47629 * 359.97438 * 23 21 19 25 25 H 1.48497 * 109.47417 * 120.00024 * 23 21 19 26 26 H 1.48506 * 109.46982 * 240.00109 * 23 21 19 27 27 S 1.70959 * 124.80140 * 180.31291 * 2 1 3 28 28 H 1.09004 * 109.46716 * 89.97825 * 1 2 3 29 29 H 1.08997 * 109.47234 * 209.97357 * 1 2 3 30 30 H 1.08994 * 109.46738 * 329.97847 * 1 2 3 31 31 H 1.07999 * 122.90432 * 180.02562 * 4 3 2 32 32 H 0.96999 * 119.99691 * 359.97438 * 8 6 5 33 33 H 1.09005 * 109.47040 * 60.00167 * 9 8 6 34 34 H 1.08999 * 109.47079 * 299.99869 * 9 8 6 35 35 H 0.96700 * 114.00311 * 60.00313 * 12 10 9 36 36 H 1.08999 * 109.47164 * 300.00361 * 13 10 9 37 37 H 1.08997 * 109.47124 * 60.00063 * 13 10 9 38 38 H 1.00893 * 111.00468 * 56.04908 * 14 13 10 39 39 H 1.09002 * 109.47169 * 299.99734 * 15 14 13 40 40 H 1.09003 * 109.47314 * 59.99718 * 15 14 13 41 41 H 0.97006 * 119.99935 * 359.97438 * 18 16 15 42 42 H 0.97003 * 119.99893 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2459 1.0627 0.0000 4 6 3.5442 0.8931 0.0005 5 6 3.9353 -0.4060 0.0004 6 6 5.3189 -0.8927 0.0015 7 8 6.2426 -0.1005 0.0020 8 7 5.5673 -2.2174 0.0018 9 6 6.9492 -2.7035 0.0022 10 6 6.9517 -4.2336 0.0032 11 1 6.3627 -4.5974 0.8451 12 8 6.3832 -4.7114 -1.2177 13 6 8.3895 -4.7412 0.1294 14 7 8.3918 -6.2102 0.1296 15 6 9.7588 -6.7344 0.2502 16 6 9.7212 -8.2410 0.2476 17 8 8.6599 -8.8209 0.1549 18 7 10.8667 -8.9439 0.3483 19 6 10.8324 -10.3144 0.3454 20 1 9.8876 -10.8308 0.2620 21 6 12.0136 -11.0391 0.4486 22 7 13.1633 -10.4107 0.5486 23 14 11.9668 -12.9064 0.4454 24 1 10.5601 -13.3663 0.3236 25 1 12.7568 -13.4194 -0.7026 26 1 12.5463 -13.4183 1.7133 27 16 2.4828 -1.4038 -0.0077 28 1 -0.3633 0.0004 -1.0277 29 1 -0.3633 -0.8902 0.5134 30 1 -0.3632 0.8898 0.5142 31 1 4.2434 1.7163 0.0010 32 1 4.8310 -2.8489 0.0017 33 1 7.4623 -2.3392 0.8923 34 1 7.4627 -2.3396 -0.8877 35 1 6.8573 -4.4258 -2.0107 36 1 8.9785 -4.3774 -0.7125 37 1 8.8231 -4.3767 1.0606 38 1 7.9367 -6.5727 -0.6946 39 1 10.3578 -6.3841 -0.5904 40 1 10.2014 -6.3840 1.1827 41 1 11.7155 -8.4801 0.4221 42 1 13.9878 -10.9166 0.6210 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320205144.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:30:41 Heat of formation + Delta-G solvation = -111.296917 kcal Electronic energy + Delta-G solvation = -25531.277397 eV Core-core repulsion = 21443.723802 eV Total energy + Delta-G solvation = -4087.553595 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.119 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.33728 -40.40814 -40.13275 -38.96811 -36.32130 -35.70555 -35.38057 -33.36224 -33.26383 -31.54546 -29.90821 -28.46737 -26.64204 -25.42934 -24.52680 -22.79584 -22.68712 -21.12318 -20.71468 -19.91273 -19.49527 -18.44098 -17.96160 -17.47943 -17.20947 -16.92869 -16.65441 -16.46861 -16.20478 -16.00483 -15.63240 -15.54498 -15.33033 -15.05607 -14.78391 -14.47922 -14.36402 -14.06905 -13.66501 -13.46616 -13.35979 -13.25537 -13.16403 -12.93800 -12.70779 -12.66859 -12.40469 -12.11176 -12.01566 -11.55043 -11.51306 -11.15130 -10.81591 -10.67911 -10.33274 -10.29640 -10.01391 -9.94315 -9.32348 -8.46878 -5.95573 -0.87477 0.08323 0.46636 1.30233 1.36969 1.42484 1.56595 1.86178 2.01773 2.05466 2.29639 2.87676 3.07107 3.20614 3.41950 3.47382 3.66879 3.86076 3.93599 3.98726 4.09528 4.18719 4.31912 4.43123 4.50312 4.56648 4.59682 4.65471 4.66364 4.75369 4.90719 5.04791 5.14665 5.16805 5.41339 5.86752 6.08928 6.21403 6.40973 6.51953 6.60218 6.75826 6.91697 7.12899 7.56435 8.11903 8.70673 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.032434 B = 0.001484 C = 0.001430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.089370 B =18859.254794 C =19575.083721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.062 3.938 3 N -0.509 5.509 4 C 0.119 3.881 5 C -0.324 4.324 6 C 0.597 3.403 7 O -0.565 6.565 8 N -0.708 5.708 9 C 0.095 3.905 10 C 0.112 3.888 11 H 0.108 0.892 12 O -0.566 6.566 13 C 0.032 3.968 14 N -0.680 5.680 15 C 0.065 3.935 16 C 0.436 3.564 17 O -0.624 6.624 18 N -0.573 5.573 19 C -0.335 4.335 20 H 0.078 0.922 21 C -0.012 4.012 22 N -0.920 5.920 23 Si 0.993 3.007 24 H -0.274 1.274 25 H -0.271 1.271 26 H -0.271 1.271 27 S 0.217 5.783 28 H 0.108 0.892 29 H 0.108 0.892 30 H 0.097 0.903 31 H 0.186 0.814 32 H 0.410 0.590 33 H 0.085 0.915 34 H 0.081 0.919 35 H 0.387 0.613 36 H 0.053 0.947 37 H 0.094 0.906 38 H 0.349 0.651 39 H 0.068 0.932 40 H 0.105 0.895 41 H 0.397 0.603 42 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.721 22.459 -2.192 30.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.212 4.212 3 N -0.225 5.225 4 C -0.040 4.040 5 C -0.449 4.449 6 C 0.383 3.617 7 O -0.446 6.446 8 N -0.359 5.359 9 C -0.029 4.029 10 C 0.052 3.948 11 H 0.126 0.874 12 O -0.373 6.373 13 C -0.098 4.098 14 N -0.313 5.313 15 C -0.067 4.067 16 C 0.224 3.776 17 O -0.510 6.510 18 N -0.211 5.211 19 C -0.464 4.464 20 H 0.096 0.904 21 C -0.212 4.212 22 N -0.561 5.561 23 Si 0.817 3.183 24 H -0.198 1.198 25 H -0.196 1.196 26 H -0.196 1.196 27 S 0.473 5.527 28 H 0.126 0.874 29 H 0.126 0.874 30 H 0.116 0.884 31 H 0.203 0.797 32 H 0.247 0.753 33 H 0.103 0.897 34 H 0.099 0.901 35 H 0.237 0.763 36 H 0.071 0.929 37 H 0.112 0.888 38 H 0.168 0.832 39 H 0.086 0.914 40 H 0.123 0.877 41 H 0.231 0.769 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -21.630 21.604 -1.170 30.594 hybrid contribution 1.939 0.306 -1.094 2.247 sum -19.692 21.910 -2.265 29.546 Atomic orbital electron populations 1.20808 0.81983 1.06076 1.05805 1.28242 1.03896 0.90814 0.98213 1.66309 1.04761 1.32379 1.19031 1.22285 0.91175 0.95789 0.94725 1.25657 0.98363 0.98688 1.22160 1.16879 0.86329 0.82593 0.75890 1.90830 1.45582 1.56118 1.52114 1.45700 1.09989 1.05843 1.74366 1.22091 0.82378 0.94371 1.04087 1.22026 0.94229 0.90014 0.88534 0.87387 1.86634 1.57492 1.77048 1.16133 1.22618 0.96714 0.87215 1.03247 1.59936 1.16070 1.07176 1.48168 1.21546 0.91544 0.90229 1.03424 1.20930 0.83728 0.90762 0.82222 1.90500 1.31274 1.72789 1.56442 1.41939 1.07998 1.06487 1.64637 1.19714 0.94575 0.82658 1.49493 0.90351 1.26028 0.93985 1.04950 0.96227 1.69673 0.98316 1.38135 1.49973 0.84870 0.78253 0.76888 0.78317 1.19819 1.19572 1.19643 1.83830 0.94340 1.09823 1.64667 0.87352 0.87364 0.88403 0.79718 0.75324 0.89698 0.90118 0.76324 0.92903 0.88763 0.83172 0.91416 0.87684 0.76945 0.91304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.35 10.46 71.24 0.75 0.40 16 2 C 0.06 0.74 7.39 88.47 0.65 1.39 16 3 N -0.51 -8.92 10.51 -190.29 -2.00 -10.92 16 4 C 0.12 2.21 11.09 84.23 0.93 3.14 16 5 C -0.32 -5.74 6.48 23.88 0.15 -5.58 16 6 C 0.60 12.39 7.79 86.45 0.67 13.06 16 7 O -0.57 -15.58 16.87 -4.30 -0.07 -15.65 16 8 N -0.71 -11.40 5.50 -467.09 -2.57 -13.96 16 9 C 0.09 1.42 5.31 86.38 0.46 1.88 16 10 C 0.11 1.82 3.27 30.60 0.10 1.92 16 11 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 12 O -0.57 -9.85 12.62 -148.98 -1.88 -11.73 16 13 C 0.03 0.60 5.39 86.30 0.47 1.06 16 14 N -0.68 -19.89 6.12 -517.93 -3.17 -23.06 16 15 C 0.06 2.11 6.17 85.56 0.53 2.64 16 16 C 0.44 20.51 7.82 87.66 0.69 21.20 16 17 O -0.62 -34.54 15.78 -3.07 -0.05 -34.59 16 18 N -0.57 -29.20 5.29 -306.98 -1.62 -30.82 16 19 C -0.33 -19.00 9.68 84.04 0.81 -18.19 16 20 H 0.08 4.76 7.16 -2.91 -0.02 4.74 16 21 C -0.01 -0.65 5.50 84.93 0.47 -0.18 16 22 N -0.92 -49.34 13.05 21.66 0.28 -49.05 16 23 Si 0.99 42.76 29.55 68.60 2.03 44.78 16 24 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 25 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 26 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 27 S 0.22 2.41 22.31 -56.49 -1.26 1.15 16 28 H 0.11 0.16 8.14 -2.39 -0.02 0.14 16 29 H 0.11 -0.01 8.14 -2.39 -0.02 -0.03 16 30 H 0.10 0.39 8.14 -2.39 -0.02 0.37 16 31 H 0.19 3.28 8.06 -2.91 -0.02 3.26 16 32 H 0.41 5.53 7.66 -92.71 -0.71 4.82 16 33 H 0.08 1.30 8.14 -2.38 -0.02 1.28 16 34 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.39 4.36 9.05 -74.06 -0.67 3.69 16 36 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.35 11.11 7.82 -89.70 -0.70 10.41 16 39 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 40 H 0.11 3.06 8.14 -2.39 -0.02 3.04 16 41 H 0.40 19.09 7.90 -92.70 -0.73 18.35 16 42 H 0.28 13.89 8.31 -92.71 -0.77 13.12 16 Total: -1.00 -77.33 382.63 -5.34 -82.67 By element: Atomic # 1 Polarization: 40.15 SS G_CDS: -1.70 Total: 38.45 kcal Atomic # 6 Polarization: 16.06 SS G_CDS: 6.68 Total: 22.74 kcal Atomic # 7 Polarization: -118.74 SS G_CDS: -9.08 Total: -127.82 kcal Atomic # 8 Polarization: -59.97 SS G_CDS: -2.00 Total: -61.97 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.78 kcal Atomic # 16 Polarization: 2.41 SS G_CDS: -1.26 Total: 1.15 kcal Total: -77.33 -5.34 -82.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320205144.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.629 kcal (2) G-P(sol) polarization free energy of solvation -77.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds