Wall clock time and date at job start Wed Apr 1 2020 01:22:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30647 * 128.63595 * 2 1 4 4 O 1.20846 * 109.61819 * 180.02562 * 3 2 1 5 5 N 1.20905 * 115.90242 * 359.74061 * 4 3 2 6 6 C 1.31596 * 109.18198 * 0.42847 * 5 4 3 7 7 C 1.48276 * 128.71105 * 179.88048 * 6 5 4 8 8 O 1.21507 * 120.00109 * 179.39593 * 7 6 5 9 9 N 1.34777 * 120.00029 * 359.67859 * 7 6 5 10 10 C 1.46506 * 119.99873 * 179.97438 * 9 7 6 11 11 H 1.09002 * 109.47448 * 34.99717 * 10 9 7 12 12 C 1.53005 * 109.46697 * 274.99430 * 10 9 7 13 13 C 1.53003 * 109.47159 * 154.99819 * 10 9 7 14 14 H 1.09002 * 109.47024 * 59.99639 * 13 10 9 15 15 C 1.52999 * 109.46786 * 299.99883 * 13 10 9 16 16 N 1.46496 * 109.46993 * 179.97438 * 13 10 9 17 17 C 1.34777 * 119.99875 * 204.99590 * 16 13 10 18 18 O 1.21279 * 120.00162 * 0.02562 * 17 16 13 19 19 C 1.50696 * 120.00141 * 180.02562 * 17 16 13 20 20 S 1.80994 * 109.47335 * 180.02562 * 19 17 16 21 21 C 1.76204 * 100.00331 * 179.97438 * 20 19 17 22 22 H 1.07998 * 119.99653 * 0.02562 * 21 20 19 23 23 C 1.38795 * 120.00282 * 179.97438 * 21 20 19 24 24 N 1.31631 * 119.99837 * 359.97438 * 23 21 20 25 25 Si 1.86804 * 120.00136 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47201 * 59.99932 * 25 23 21 27 27 H 1.48497 * 109.47076 * 180.02562 * 25 23 21 28 28 H 1.48504 * 109.46792 * 299.99912 * 25 23 21 29 29 H 1.09008 * 109.46584 * 269.96645 * 1 2 3 30 30 H 1.08998 * 109.47733 * 29.96118 * 1 2 3 31 31 H 1.08998 * 109.47268 * 149.97045 * 1 2 3 32 32 H 0.96999 * 120.00047 * 359.97438 * 9 7 6 33 33 H 1.08999 * 109.46918 * 60.00700 * 12 10 9 34 34 H 1.09002 * 109.46833 * 180.02562 * 12 10 9 35 35 H 1.08994 * 109.47233 * 299.99718 * 12 10 9 36 36 H 1.09002 * 109.47140 * 299.99684 * 15 13 10 37 37 H 1.09002 * 109.47312 * 60.00081 * 15 13 10 38 38 H 1.09003 * 109.47155 * 179.97438 * 15 13 10 39 39 H 0.96999 * 120.00082 * 25.00609 * 16 13 10 40 40 H 1.09004 * 109.47043 * 300.00223 * 19 17 16 41 41 H 1.09004 * 109.47476 * 60.00149 * 19 17 16 42 42 H 0.97002 * 119.99547 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3227 1.0205 0.0000 4 8 3.4652 0.6267 -0.0005 5 7 3.6101 -0.5736 0.0040 6 6 2.4281 -1.1519 -0.0008 7 6 2.1035 -2.5987 -0.0005 8 8 0.9438 -2.9612 0.0056 9 7 3.0949 -3.5117 -0.0013 10 6 2.7742 -4.9412 -0.0005 11 1 1.8726 -5.1117 -0.5889 12 6 2.5416 -5.4108 1.4370 13 6 3.9375 -5.7253 -0.6112 14 1 4.8391 -5.5548 -0.0228 15 6 4.1701 -5.2556 -2.0486 16 7 3.6170 -7.1547 -0.6098 17 6 4.6086 -8.0676 -0.6106 18 8 5.7661 -7.7057 -0.6120 19 6 4.2790 -9.5381 -0.6097 20 16 5.8121 -10.5001 -0.6104 21 6 5.1491 -12.1326 -0.6084 22 1 4.0793 -12.2809 -0.6077 23 6 6.0015 -13.2279 -0.6089 24 7 7.3054 -13.0471 -0.6112 25 14 5.2986 -14.9586 -0.6076 26 1 4.4625 -15.1543 -1.8191 27 1 6.4095 -15.9441 -0.6077 28 1 4.4649 -15.1533 0.6059 29 1 -0.3633 -0.0006 1.0278 30 1 -0.3634 0.8903 -0.5132 31 1 -0.3634 -0.8897 -0.5143 32 1 4.0207 -3.2224 -0.0024 33 1 1.7128 -4.8523 1.8720 34 1 2.3034 -6.4745 1.4377 35 1 3.4432 -5.2404 2.0253 36 1 3.2685 -5.4261 -2.6370 37 1 4.4087 -4.1920 -2.0492 38 1 4.9992 -5.8138 -2.4836 39 1 2.6913 -7.4442 -0.6084 40 1 3.6991 -9.7799 0.2810 41 1 3.6971 -9.7806 -1.4990 42 1 7.9011 -13.8126 -0.6119 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001333830294.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:22:46 Heat of formation + Delta-G solvation = 9.699571 kcal Electronic energy + Delta-G solvation = -26493.667281 eV Core-core repulsion = 22411.360487 eV Total energy + Delta-G solvation = -4082.306794 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.119 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -48.00721 -41.42531 -40.57820 -38.02282 -36.30428 -35.91088 -35.18144 -34.57045 -32.53930 -31.20612 -30.34748 -29.88257 -27.64464 -27.06451 -24.93993 -23.73066 -22.74745 -21.90960 -21.49785 -20.17872 -19.99297 -19.61410 -18.37880 -18.09824 -17.14271 -17.03325 -16.86438 -16.44701 -16.30844 -15.81924 -15.60507 -15.13323 -15.07237 -14.77025 -14.50041 -14.44484 -14.43265 -14.35817 -13.79624 -13.40709 -13.26663 -13.15250 -13.03983 -12.94883 -12.86385 -12.77309 -12.62295 -12.55776 -12.32475 -11.85821 -11.72889 -11.64674 -11.42388 -11.11841 -10.96438 -10.53353 -10.25984 -10.12916 -8.64596 -8.33538 -6.11019 -0.43609 0.20500 1.19584 1.35518 1.44433 1.49819 1.59325 1.62698 1.70278 2.15932 2.28185 2.30096 2.37996 2.76841 3.00696 3.31190 3.35034 3.54934 3.67514 3.81014 3.97077 4.04030 4.07523 4.31943 4.36437 4.41872 4.54202 4.59092 4.62303 4.66491 4.71199 4.81431 4.89650 5.07334 5.14681 5.19023 5.22742 5.43022 5.44459 6.06747 6.20758 6.47683 6.70620 7.08058 7.23838 7.29341 8.75193 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.035618 B = 0.001755 C = 0.001706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.928739 B =15955.069277 C =16410.753780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.067 3.933 3 N -0.366 5.366 4 O 0.343 5.657 5 N -0.320 5.320 6 C -0.055 4.055 7 C 0.616 3.384 8 O -0.526 6.526 9 N -0.694 5.694 10 C 0.149 3.851 11 H 0.108 0.892 12 C -0.163 4.163 13 C 0.141 3.859 14 H 0.081 0.919 15 C -0.161 4.161 16 N -0.704 5.704 17 C 0.541 3.459 18 O -0.560 6.560 19 C -0.131 4.131 20 S -0.150 6.150 21 C -0.547 4.547 22 H 0.083 0.917 23 C 0.014 3.986 24 N -0.911 5.911 25 Si 0.996 3.004 26 H -0.262 1.262 27 H -0.280 1.280 28 H -0.262 1.262 29 H 0.107 0.893 30 H 0.104 0.896 31 H 0.100 0.900 32 H 0.415 0.585 33 H 0.064 0.936 34 H 0.080 0.920 35 H 0.057 0.943 36 H 0.071 0.929 37 H 0.078 0.922 38 H 0.043 0.957 39 H 0.417 0.583 40 H 0.112 0.888 41 H 0.110 0.890 42 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.163 26.044 1.355 31.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.099 4.099 3 N -0.093 5.093 4 O 0.117 5.883 5 N -0.040 5.040 6 C -0.220 4.220 7 C 0.398 3.602 8 O -0.400 6.400 9 N -0.346 5.346 10 C 0.045 3.955 11 H 0.126 0.874 12 C -0.221 4.221 13 C 0.035 3.965 14 H 0.099 0.901 15 C -0.219 4.219 16 N -0.359 5.359 17 C 0.327 3.673 18 O -0.437 6.437 19 C -0.282 4.282 20 S 0.077 5.923 21 C -0.695 4.695 22 H 0.101 0.899 23 C -0.191 4.191 24 N -0.547 5.547 25 Si 0.818 3.182 26 H -0.187 1.187 27 H -0.205 1.205 28 H -0.187 1.187 29 H 0.126 0.874 30 H 0.123 0.877 31 H 0.119 0.881 32 H 0.252 0.748 33 H 0.083 0.917 34 H 0.099 0.901 35 H 0.076 0.924 36 H 0.090 0.910 37 H 0.097 0.903 38 H 0.062 0.938 39 H 0.255 0.745 40 H 0.130 0.870 41 H 0.128 0.872 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -14.953 26.977 1.362 30.874 hybrid contribution -1.554 -1.960 -0.010 2.501 sum -16.506 25.017 1.352 30.002 Atomic orbital electron populations 1.20520 0.80960 1.06055 1.05864 1.26716 1.01466 0.84396 0.97335 1.75109 0.91155 1.24232 1.18819 1.85084 1.23524 1.16368 1.63290 1.75363 1.23158 0.93143 1.12298 1.26036 0.88591 0.98333 1.09075 1.16347 0.85344 0.81601 0.76883 1.90832 1.19354 1.79712 1.50123 1.45706 1.09949 1.05834 1.73103 1.21146 0.98084 0.78135 0.98179 0.87377 1.22184 1.02418 1.02706 0.94829 1.21036 0.97918 0.79995 0.97548 0.90082 1.22160 1.02389 1.01834 0.95506 1.45602 1.09736 1.04797 1.75787 1.19971 0.85160 0.87446 0.74768 1.90703 1.21548 1.81664 1.49807 1.23380 1.03754 0.94122 1.06950 1.85565 1.08397 1.01260 1.97056 1.23181 0.95790 0.91664 1.58823 0.89861 1.26105 0.94913 1.04301 0.93806 1.70176 1.03651 1.32899 1.48013 0.85031 0.77868 0.75794 0.79484 1.18699 1.20528 1.18665 0.87424 0.87704 0.88096 0.74796 0.91685 0.90091 0.92367 0.91035 0.90323 0.93827 0.74495 0.87007 0.87179 0.92047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.59 10.22 71.24 0.73 0.14 16 2 C 0.07 0.91 7.79 45.17 0.35 1.26 16 3 N -0.37 -5.61 12.22 -51.78 -0.63 -6.24 16 4 O 0.34 5.33 11.65 140.84 1.64 6.97 16 5 N -0.32 -5.04 12.13 -52.06 -0.63 -5.67 16 6 C -0.05 -0.85 7.56 44.29 0.33 -0.51 16 7 C 0.62 9.84 7.81 86.91 0.68 10.52 16 8 O -0.53 -10.16 15.63 -3.74 -0.06 -10.21 16 9 N -0.69 -9.48 4.38 -444.96 -1.95 -11.43 16 10 C 0.15 2.11 2.20 44.99 0.10 2.21 16 11 H 0.11 1.46 7.58 -2.39 -0.02 1.44 16 12 C -0.16 -2.37 9.33 71.98 0.67 -1.70 16 13 C 0.14 2.62 2.21 44.99 0.10 2.72 16 14 H 0.08 1.83 7.58 -2.39 -0.02 1.81 16 15 C -0.16 -2.96 9.33 71.98 0.67 -2.29 16 16 N -0.70 -15.08 4.38 -442.54 -1.94 -17.02 16 17 C 0.54 18.11 7.81 87.66 0.68 18.79 16 18 O -0.56 -24.04 15.52 -3.03 -0.05 -24.09 16 19 C -0.13 -4.85 6.16 71.23 0.44 -4.41 16 20 S -0.15 -8.08 20.57 -56.49 -1.16 -9.24 16 21 C -0.55 -30.58 9.50 67.95 0.65 -29.93 16 22 H 0.08 4.29 7.80 -2.91 -0.02 4.27 16 23 C 0.01 0.76 5.49 84.86 0.47 1.23 16 24 N -0.91 -55.36 13.22 21.65 0.29 -55.07 16 25 Si 1.00 42.96 29.55 68.60 2.03 44.98 16 26 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 27 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 28 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 29 H 0.11 0.58 8.14 -2.38 -0.02 0.56 16 30 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.10 0.86 7.32 -2.39 -0.02 0.85 16 32 H 0.42 5.03 8.24 -92.71 -0.76 4.27 16 33 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.08 1.11 7.44 -2.39 -0.02 1.09 16 35 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.08 1.18 7.45 -2.39 -0.02 1.16 16 38 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.42 6.18 8.39 -92.71 -0.78 5.40 16 40 H 0.11 3.68 8.14 -2.39 -0.02 3.66 16 41 H 0.11 3.66 8.14 -2.39 -0.02 3.64 16 42 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 Total: -1.00 -75.89 381.24 2.94 -72.94 By element: Atomic # 1 Polarization: 16.51 SS G_CDS: -0.46 Total: 16.05 kcal Atomic # 6 Polarization: -7.84 SS G_CDS: 5.87 Total: -1.97 kcal Atomic # 7 Polarization: -90.57 SS G_CDS: -4.87 Total: -95.43 kcal Atomic # 8 Polarization: -28.86 SS G_CDS: 1.54 Total: -27.33 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.98 kcal Atomic # 16 Polarization: -8.08 SS G_CDS: -1.16 Total: -9.24 kcal Total: -75.89 2.94 -72.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333830294.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.641 kcal (2) G-P(sol) polarization free energy of solvation -75.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.941 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds