Wall clock time and date at job start Wed Apr 1 2020 01:22:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30649 * 128.64713 * 2 1 4 4 O 1.20831 * 109.62355 * 180.02562 * 3 2 1 5 5 N 1.20912 * 115.90683 * 359.73179 * 4 3 2 6 6 C 1.31594 * 109.17786 * 0.43452 * 5 4 3 7 7 C 1.48283 * 128.71079 * 179.88146 * 6 5 4 8 8 O 1.21501 * 119.99994 * 179.67429 * 7 6 5 9 9 N 1.34772 * 120.00202 * 359.67073 * 7 6 5 10 10 C 1.46492 * 120.00385 * 180.02562 * 9 7 6 11 11 H 1.09001 * 109.47164 * 325.00377 * 10 9 7 12 12 C 1.52997 * 109.47244 * 85.00122 * 10 9 7 13 13 C 1.53006 * 109.47363 * 205.00351 * 10 9 7 14 14 H 1.08998 * 109.46505 * 299.99571 * 13 10 9 15 15 C 1.52997 * 109.47127 * 59.99700 * 13 10 9 16 16 N 1.46500 * 109.47249 * 180.02562 * 13 10 9 17 17 C 1.34768 * 120.00056 * 154.99998 * 16 13 10 18 18 O 1.21278 * 120.00079 * 359.97438 * 17 16 13 19 19 C 1.50705 * 120.00177 * 179.97438 * 17 16 13 20 20 S 1.81002 * 109.47331 * 179.97438 * 19 17 16 21 21 C 1.76197 * 99.99778 * 180.02562 * 20 19 17 22 22 H 1.08000 * 120.00579 * 0.02562 * 21 20 19 23 23 C 1.38806 * 119.99871 * 179.97438 * 21 20 19 24 24 N 1.31627 * 120.00235 * 180.02562 * 23 21 20 25 25 Si 1.86803 * 119.99883 * 0.02562 * 23 21 20 26 26 H 1.48498 * 109.46915 * 89.99687 * 25 23 21 27 27 H 1.48494 * 109.47035 * 210.00004 * 25 23 21 28 28 H 1.48505 * 109.46973 * 329.99629 * 25 23 21 29 29 H 1.08997 * 109.47097 * 269.97588 * 1 2 3 30 30 H 1.09001 * 109.47047 * 29.97454 * 1 2 3 31 31 H 1.08997 * 109.47350 * 149.97340 * 1 2 3 32 32 H 0.97012 * 119.99590 * 0.02562 * 9 7 6 33 33 H 1.09004 * 109.47261 * 180.02562 * 12 10 9 34 34 H 1.09002 * 109.47153 * 300.00242 * 12 10 9 35 35 H 1.09001 * 109.47289 * 60.00326 * 12 10 9 36 36 H 1.09002 * 109.47153 * 180.02562 * 15 13 10 37 37 H 1.09001 * 109.46832 * 60.00321 * 15 13 10 38 38 H 1.09004 * 109.47261 * 300.00303 * 15 13 10 39 39 H 0.97001 * 119.99547 * 334.99826 * 16 13 10 40 40 H 1.08996 * 109.47135 * 300.00342 * 19 17 16 41 41 H 1.09000 * 109.46519 * 60.00292 * 19 17 16 42 42 H 0.96991 * 120.00421 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3229 1.0204 0.0000 4 8 3.4652 0.6265 -0.0005 5 7 3.6102 -0.5739 0.0042 6 6 2.4280 -1.1520 -0.0006 7 6 2.1033 -2.5989 -0.0002 8 8 0.9436 -2.9612 0.0008 9 7 3.0946 -3.5120 -0.0009 10 6 2.7739 -4.9414 -0.0010 11 1 1.8732 -5.1117 0.5888 12 6 2.5387 -5.4112 -1.4380 13 6 3.9381 -5.7254 0.6079 14 1 4.8387 -5.5551 0.0179 15 6 4.1733 -5.2556 2.0448 16 7 3.6176 -7.1549 0.6072 17 6 4.6090 -8.0678 0.6064 18 8 5.7666 -7.7059 0.6058 19 6 4.2794 -9.5383 0.6063 20 16 5.8125 -10.5004 0.6045 21 6 5.1493 -12.1328 0.6038 22 1 4.0795 -12.2811 0.6041 23 6 6.0017 -13.2283 0.6019 24 7 5.5063 -14.4478 0.6009 25 14 7.8521 -12.9718 0.6006 26 1 8.3435 -12.9054 2.0004 27 1 8.5082 -14.1041 -0.1012 28 1 8.1753 -11.7021 -0.0983 29 1 -0.3633 -0.0004 1.0276 30 1 -0.3633 0.8902 -0.5134 31 1 -0.3634 -0.8897 -0.5142 32 1 4.0205 -3.2226 -0.0014 33 1 2.2996 -6.4747 -1.4380 34 1 1.7093 -4.8526 -1.8718 35 1 3.4394 -5.2409 -2.0279 36 1 5.0030 -5.8138 2.4785 37 1 3.2726 -5.4259 2.6347 38 1 4.4119 -4.1920 2.0449 39 1 2.6918 -7.4443 0.6073 40 1 3.6990 -9.7806 1.4965 41 1 3.6980 -9.7802 -0.2835 42 1 6.1020 -15.2132 0.5999 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333830295.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:22:52 Heat of formation + Delta-G solvation = 34.994853 kcal Electronic energy + Delta-G solvation = -26546.256048 eV Core-core repulsion = 22465.046140 eV Total energy + Delta-G solvation = -4081.209908 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.119 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -47.42312 -40.66164 -39.51403 -37.14012 -35.73644 -35.28896 -34.29389 -32.46969 -31.56497 -30.46182 -29.87144 -28.70705 -26.44969 -25.64688 -24.19724 -23.15097 -21.95088 -21.18965 -20.45568 -19.58673 -19.13352 -17.99466 -17.69842 -16.99021 -16.18665 -16.04591 -15.61471 -15.23161 -14.99426 -14.94043 -14.56176 -14.29412 -14.07786 -13.92139 -13.90532 -13.75349 -13.44036 -12.83027 -12.81637 -12.68942 -12.52626 -12.42617 -12.20605 -12.03605 -11.74996 -11.69770 -11.30097 -11.09858 -11.03814 -10.97396 -10.88249 -10.64105 -9.90190 -9.83749 -9.62352 -9.14697 -9.02746 -8.54563 -6.95838 -6.31796 -4.04062 0.18528 0.76372 1.95859 2.34989 2.68470 2.81497 2.86148 2.88122 3.19005 3.30448 3.39203 3.47510 3.62511 4.04054 4.11776 4.27739 4.30069 4.53026 4.55021 4.68156 4.75029 4.89072 5.03149 5.05408 5.07215 5.12714 5.22770 5.27737 5.41584 5.42074 5.49718 5.65286 5.70590 5.83579 5.85971 5.95709 5.99967 6.39832 6.69416 7.34761 7.46999 7.88532 7.91125 8.37440 8.38878 9.14199 10.77378 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.034051 B = 0.001825 C = 0.001770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.092105 B =15337.660560 C =15817.999065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.063 3.937 3 N -0.356 5.356 4 O 0.345 5.655 5 N -0.318 5.318 6 C -0.046 4.046 7 C 0.611 3.389 8 O -0.508 6.508 9 N -0.700 5.700 10 C 0.136 3.864 11 H 0.101 0.899 12 C -0.166 4.166 13 C 0.138 3.862 14 H 0.095 0.905 15 C -0.165 4.165 16 N -0.729 5.729 17 C 0.535 3.465 18 O -0.516 6.516 19 C -0.124 4.124 20 S -0.141 6.141 21 C -0.522 4.522 22 H 0.088 0.912 23 C 0.096 3.904 24 N -0.879 5.879 25 Si 0.857 3.143 26 H -0.267 1.267 27 H -0.274 1.274 28 H -0.235 1.235 29 H 0.095 0.905 30 H 0.088 0.912 31 H 0.102 0.898 32 H 0.410 0.590 33 H 0.076 0.924 34 H 0.064 0.936 35 H 0.062 0.938 36 H 0.070 0.930 37 H 0.059 0.941 38 H 0.061 0.939 39 H 0.401 0.599 40 H 0.098 0.902 41 H 0.098 0.902 42 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.640 29.340 -1.412 31.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.102 4.102 3 N -0.082 5.082 4 O 0.119 5.881 5 N -0.038 5.038 6 C -0.211 4.211 7 C 0.394 3.606 8 O -0.381 6.381 9 N -0.352 5.352 10 C 0.032 3.968 11 H 0.118 0.882 12 C -0.224 4.224 13 C 0.032 3.968 14 H 0.113 0.887 15 C -0.224 4.224 16 N -0.384 5.384 17 C 0.321 3.679 18 O -0.390 6.390 19 C -0.275 4.275 20 S 0.085 5.915 21 C -0.670 4.670 22 H 0.106 0.894 23 C -0.113 4.113 24 N -0.516 5.516 25 Si 0.681 3.319 26 H -0.192 1.192 27 H -0.199 1.199 28 H -0.159 1.159 29 H 0.113 0.887 30 H 0.107 0.893 31 H 0.121 0.879 32 H 0.246 0.754 33 H 0.095 0.905 34 H 0.083 0.917 35 H 0.081 0.919 36 H 0.089 0.911 37 H 0.078 0.922 38 H 0.080 0.920 39 H 0.236 0.764 40 H 0.116 0.884 41 H 0.117 0.883 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -8.555 30.128 -1.411 31.351 hybrid contribution -1.182 -1.135 0.059 1.640 sum -9.737 28.993 -1.352 30.614 Atomic orbital electron populations 1.20373 0.82758 1.05407 1.04907 1.26279 1.00447 0.85001 0.98514 1.75100 0.91095 1.23922 1.18047 1.85087 1.23349 1.16490 1.63157 1.75380 1.22973 0.92991 1.12432 1.26029 0.88285 0.98327 1.08490 1.16357 0.85573 0.81441 0.77269 1.90842 1.18726 1.79423 1.49109 1.45762 1.09738 1.06113 1.73630 1.21303 0.98981 0.78258 0.98258 0.88150 1.22204 1.02671 1.02457 0.95038 1.20998 0.97558 0.80971 0.97299 0.88673 1.22214 1.02974 1.01236 0.95952 1.45880 1.09932 1.04754 1.77801 1.20288 0.85134 0.87584 0.74888 1.90706 1.19525 1.81267 1.47498 1.23282 1.05190 0.93098 1.05940 1.84795 1.06943 1.02279 1.97438 1.22310 0.97010 0.88762 1.58910 0.89352 1.24716 0.99317 0.94103 0.93169 1.69931 1.35967 0.97743 1.47943 0.86737 0.84958 0.80227 0.79930 1.19209 1.19927 1.15944 0.88665 0.89288 0.87890 0.75408 0.90507 0.91696 0.91856 0.91082 0.92168 0.91966 0.76424 0.88387 0.88346 0.91913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.36 10.22 36.01 0.37 0.01 16 2 C 0.06 0.47 7.79 -79.32 -0.62 -0.15 16 3 N -0.36 -2.85 12.22 33.76 0.41 -2.44 16 4 O 0.35 2.74 11.65 27.26 0.32 3.06 16 5 N -0.32 -2.56 12.13 33.49 0.41 -2.16 16 6 C -0.05 -0.37 7.56 -80.07 -0.61 -0.97 16 7 C 0.61 5.22 7.81 -12.13 -0.09 5.12 16 8 O -0.51 -5.27 15.62 5.37 0.08 -5.19 16 9 N -0.70 -5.10 4.38 -54.62 -0.24 -5.34 16 10 C 0.14 1.05 2.21 -67.93 -0.15 0.90 16 11 H 0.10 0.79 7.58 -51.93 -0.39 0.40 16 12 C -0.17 -1.29 9.33 37.16 0.35 -0.95 16 13 C 0.14 1.29 2.21 -67.93 -0.15 1.14 16 14 H 0.10 1.03 7.58 -51.93 -0.39 0.64 16 15 C -0.17 -1.54 9.33 37.16 0.35 -1.19 16 16 N -0.73 -7.93 4.38 -53.81 -0.24 -8.17 16 17 C 0.53 8.60 7.81 -10.99 -0.09 8.52 16 18 O -0.52 -10.24 15.52 5.56 0.09 -10.15 16 19 C -0.12 -2.26 6.16 36.01 0.22 -2.03 16 20 S -0.14 -3.46 18.55 -107.50 -1.99 -5.45 16 21 C -0.52 -14.75 10.04 30.94 0.31 -14.44 16 22 H 0.09 2.60 8.03 -52.49 -0.42 2.18 16 23 C 0.10 2.76 5.50 -17.43 -0.10 2.66 16 24 N -0.88 -26.21 13.97 55.49 0.78 -25.43 16 25 Si 0.86 21.47 27.74 -169.99 -4.72 16.75 16 26 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 27 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 28 H -0.24 -5.87 6.74 56.52 0.38 -5.49 16 29 H 0.09 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.09 0.29 8.14 -51.93 -0.42 -0.14 16 31 H 0.10 0.52 7.31 -51.93 -0.38 0.14 16 32 H 0.41 2.60 8.24 -40.81 -0.34 2.26 16 33 H 0.08 0.58 7.44 -51.93 -0.39 0.20 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.06 0.48 7.45 -51.93 -0.39 0.10 16 39 H 0.40 3.32 8.39 -40.82 -0.34 2.98 16 40 H 0.10 1.65 8.14 -51.92 -0.42 1.23 16 41 H 0.10 1.65 8.14 -51.92 -0.42 1.22 16 42 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 378.54 15.07 5.70 5.70 Total: -1.00 -33.95 378.54 -5.18 -39.13 By element: Atomic # 1 Polarization: 6.64 SS G_CDS: -5.58 Total: 1.07 kcal Atomic # 6 Polarization: -1.17 SS G_CDS: -0.21 Total: -1.38 kcal Atomic # 7 Polarization: -44.66 SS G_CDS: 1.12 Total: -43.54 kcal Atomic # 8 Polarization: -12.77 SS G_CDS: 0.49 Total: -12.28 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -4.72 Total: 16.75 kcal Atomic # 16 Polarization: -3.46 SS G_CDS: -1.99 Total: -5.45 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -33.95 -5.18 -39.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333830295.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.129 kcal (2) G-P(sol) polarization free energy of solvation -33.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.134 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds