Wall clock time and date at job start Wed Apr 1 2020 00:24:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86801 * 119.99675 * 2 1 4 4 H 1.48495 * 109.47035 * 240.00140 * 3 2 1 5 5 H 1.48499 * 109.47381 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46580 * 120.00500 * 3 2 1 7 7 C 1.38796 * 119.99941 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99554 * 179.97438 * 7 2 1 9 9 S 1.76200 * 120.00095 * 359.97438 * 7 2 1 10 10 C 1.80999 * 99.99730 * 179.97438 * 9 7 2 11 11 C 1.50702 * 109.46903 * 179.97438 * 10 9 7 12 12 O 1.21283 * 120.00262 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99928 * 179.72354 * 11 10 9 14 14 C 1.46499 * 120.00199 * 180.27479 * 13 11 10 15 15 H 1.09003 * 112.85060 * 334.67209 * 14 13 11 16 16 C 1.53779 * 113.61441 * 105.86649 * 14 13 11 17 17 C 1.54048 * 86.98828 * 89.16190 * 16 14 13 18 18 H 1.08995 * 113.61840 * 139.97347 * 17 16 14 19 19 N 1.46498 * 113.69252 * 270.87680 * 17 16 14 20 20 C 1.34774 * 119.99719 * 252.53062 * 19 17 16 21 21 O 1.21284 * 120.00253 * 359.97438 * 20 19 17 22 22 C 1.50700 * 119.99880 * 180.02562 * 20 19 17 23 23 H 1.09006 * 110.49029 * 317.29663 * 22 20 19 24 24 C 1.54103 * 110.54938 * 79.99227 * 22 20 19 25 25 N 1.47058 * 103.85817 * 118.59778 * 24 22 20 26 26 C 1.33945 * 109.18041 * 359.97438 * 25 24 22 27 27 O 1.21589 * 123.04185 * 179.97438 * 26 25 24 28 28 N 1.33944 * 113.91579 * 0.02562 * 26 25 24 29 29 C 1.53776 * 113.61859 * 203.47296 * 14 13 11 30 30 H 0.97002 * 120.00288 * 359.97438 * 1 2 3 31 31 H 1.09004 * 109.47193 * 60.00140 * 10 9 7 32 32 H 1.08994 * 109.47534 * 299.99814 * 10 9 7 33 33 H 0.97000 * 120.00317 * 0.28382 * 13 11 10 34 34 H 1.08999 * 113.61713 * 203.67249 * 16 14 13 35 35 H 1.09006 * 113.61487 * 334.56543 * 16 14 13 36 36 H 0.96996 * 119.99549 * 72.52629 * 19 17 16 37 37 H 1.08997 * 110.54875 * 237.18707 * 24 22 20 38 38 H 1.08996 * 110.55220 * 359.85961 * 24 22 20 39 39 H 0.97007 * 125.40721 * 180.02562 * 25 24 22 40 40 H 0.97008 * 125.41037 * 180.02562 * 28 26 25 41 41 H 1.09000 * 113.61605 * 25.43638 * 29 14 13 42 42 H 1.08998 * 113.61510 * 156.25207 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2853 2.7465 0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2019 -0.0010 9 16 1.1293 -2.7280 -0.0005 10 6 2.5159 -3.8913 -0.0021 11 6 1.9875 -5.3026 -0.0017 12 8 0.7912 -5.5023 -0.0009 13 7 2.8442 -6.3430 -0.0084 14 6 2.3306 -7.7150 -0.0141 15 1 1.3327 -7.7951 0.4172 16 6 2.4728 -8.4204 -1.3731 17 6 3.8613 -8.8856 -0.8948 18 1 4.0987 -9.9116 -1.1755 19 7 4.9388 -7.9451 -1.2120 20 6 5.8290 -8.2417 -2.1793 21 8 5.7384 -9.2875 -2.7869 22 6 6.9378 -7.2745 -2.5053 23 1 6.5585 -6.2529 -2.5281 24 6 8.0850 -7.4028 -1.4844 25 7 9.2386 -7.8105 -2.3003 26 6 8.8585 -7.9111 -3.5807 27 8 9.6176 -8.2329 -4.4743 28 7 7.5667 -7.6239 -3.7878 29 6 3.3259 -8.7478 0.5403 30 1 -0.4851 0.8400 0.0004 31 1 3.1252 -3.7316 0.8875 32 1 3.1238 -3.7309 -0.8925 33 1 3.8010 -6.1834 -0.0093 34 1 1.7647 -9.2364 -1.5178 35 1 2.5082 -7.7344 -2.2195 36 1 5.0113 -7.1089 -0.7258 37 1 8.2771 -6.4444 -1.0022 38 1 7.8517 -8.1643 -0.7403 39 1 10.1327 -7.9804 -1.9643 40 1 7.1172 -7.6439 -4.6472 41 1 4.0497 -8.3261 1.2377 42 1 2.8506 -9.6526 0.9192 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001353714721.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:24:43 Heat of formation + Delta-G solvation = -90.987610 kcal Electronic energy + Delta-G solvation = -26971.066460 eV Core-core repulsion = 22884.393542 eV Total energy + Delta-G solvation = -4086.672917 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.119 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.43433 -41.52749 -40.21952 -39.00215 -37.35250 -34.89024 -34.54443 -34.03664 -33.91177 -30.73504 -30.13433 -27.64165 -26.72024 -25.92264 -24.44811 -22.85115 -22.44336 -21.33700 -20.98186 -19.76418 -19.06417 -18.70609 -17.86749 -17.41311 -17.14541 -17.00006 -16.84169 -16.62744 -16.39916 -16.14188 -15.89328 -15.59011 -15.41014 -15.04288 -14.91923 -14.63402 -14.42679 -13.93779 -13.91682 -13.61179 -13.28353 -13.17419 -13.12881 -12.95609 -12.83244 -12.58949 -11.82585 -11.74670 -11.61720 -11.46110 -11.38152 -11.09244 -10.92111 -10.58439 -10.21805 -10.18890 -10.04378 -9.85134 -8.62356 -8.31219 -6.08566 1.29007 1.33019 1.46579 1.50013 1.57449 1.63407 1.65940 1.90158 2.09924 2.29758 2.33805 3.03493 3.03652 3.28147 3.34008 3.43604 3.50798 3.61780 3.91718 3.98795 4.01584 4.14934 4.34419 4.38024 4.56336 4.64837 4.65345 4.70764 4.81401 4.84150 4.88191 5.01910 5.05937 5.38623 5.45732 5.64947 5.87852 6.18123 6.23113 6.25231 6.41392 6.48642 7.07413 7.10739 7.27665 7.49485 8.77456 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.010487 B = 0.002602 C = 0.002166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2669.279886 B =10756.852927 C =12923.029326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.012 3.988 3 Si 0.996 3.004 4 H -0.262 1.262 5 H -0.284 1.284 6 H -0.260 1.260 7 C -0.542 4.542 8 H 0.087 0.913 9 S -0.158 6.158 10 C -0.130 4.130 11 C 0.537 3.463 12 O -0.563 6.563 13 N -0.693 5.693 14 C 0.108 3.892 15 H 0.085 0.915 16 C -0.166 4.166 17 C 0.121 3.879 18 H 0.100 0.900 19 N -0.693 5.693 20 C 0.509 3.491 21 O -0.566 6.566 22 C 0.099 3.901 23 H 0.157 0.843 24 C 0.103 3.897 25 N -0.729 5.729 26 C 0.694 3.306 27 O -0.641 6.641 28 N -0.716 5.716 29 C -0.125 4.125 30 H 0.270 0.730 31 H 0.117 0.883 32 H 0.115 0.885 33 H 0.409 0.591 34 H 0.108 0.892 35 H 0.056 0.944 36 H 0.411 0.589 37 H 0.141 0.859 38 H 0.102 0.898 39 H 0.441 0.559 40 H 0.433 0.567 41 H 0.102 0.898 42 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.057 -16.773 3.540 24.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.192 4.192 3 Si 0.818 3.182 4 H -0.186 1.186 5 H -0.210 1.210 6 H -0.185 1.185 7 C -0.690 4.690 8 H 0.106 0.894 9 S 0.069 5.931 10 C -0.281 4.281 11 C 0.323 3.677 12 O -0.441 6.441 13 N -0.348 5.348 14 C 0.002 3.998 15 H 0.103 0.897 16 C -0.206 4.206 17 C 0.015 3.985 18 H 0.118 0.882 19 N -0.347 5.347 20 C 0.293 3.707 21 O -0.443 6.443 22 C -0.010 4.010 23 H 0.174 0.826 24 C -0.021 4.021 25 N -0.392 5.392 26 C 0.392 3.608 27 O -0.523 6.523 28 N -0.377 5.377 29 C -0.163 4.163 30 H 0.078 0.922 31 H 0.135 0.865 32 H 0.133 0.867 33 H 0.248 0.752 34 H 0.126 0.874 35 H 0.075 0.925 36 H 0.250 0.750 37 H 0.159 0.841 38 H 0.120 0.880 39 H 0.284 0.716 40 H 0.275 0.725 41 H 0.121 0.879 42 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 15.235 -17.909 2.709 23.668 hybrid contribution 1.593 1.523 -0.366 2.234 sum 16.828 -16.386 2.343 23.605 Atomic orbital electron populations 1.70183 1.08037 1.28554 1.48216 1.26110 0.95885 1.03338 0.93916 0.85037 0.77790 0.75827 0.79570 1.18618 1.20980 1.18456 1.23182 0.95457 0.91848 1.58517 0.89444 1.85703 1.10863 0.99440 1.97065 1.23393 1.03521 0.93920 1.07301 1.20123 0.86252 0.86688 0.74630 1.90716 1.17650 1.85989 1.49701 1.45453 1.09489 1.04302 1.75593 1.22051 0.99570 0.80695 0.97462 0.89680 1.24001 0.98179 1.00997 0.97464 1.21978 0.85694 0.94141 0.96654 0.88158 1.45654 1.28188 1.23049 1.37760 1.21183 0.82913 0.87188 0.79368 1.90769 1.74874 1.27154 1.51519 1.22233 0.93397 1.00377 0.85038 0.82611 1.22636 0.81708 1.05271 0.92486 1.45048 1.14280 1.73922 1.05977 1.16203 0.82862 0.77558 0.84155 1.90964 1.56779 1.57527 1.46994 1.44886 1.08977 1.73549 1.10268 1.23639 0.97720 0.99681 0.95295 0.92157 0.86490 0.86689 0.75207 0.87355 0.92486 0.75044 0.84144 0.88025 0.71583 0.72489 0.87920 0.85272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.37 13.22 21.65 0.29 -54.08 16 2 C 0.01 0.66 5.49 84.86 0.47 1.13 16 3 Si 1.00 41.35 29.55 68.60 2.03 43.38 16 4 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 5 H -0.28 -11.75 7.11 99.48 0.71 -11.05 16 6 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 7 C -0.54 -28.89 9.50 67.95 0.65 -28.24 16 8 H 0.09 4.21 7.80 -2.91 -0.02 4.18 16 9 S -0.16 -8.14 20.57 -56.49 -1.16 -9.30 16 10 C -0.13 -4.31 6.16 71.24 0.44 -3.87 16 11 C 0.54 16.42 7.85 87.66 0.69 17.11 16 12 O -0.56 -23.47 15.48 -3.04 -0.05 -23.51 16 13 N -0.69 -11.97 5.12 -440.04 -2.25 -14.23 16 14 C 0.11 1.69 4.29 45.52 0.20 1.88 16 15 H 0.08 1.80 7.50 -2.39 -0.02 1.79 16 16 C -0.17 -2.52 7.70 31.21 0.24 -2.28 16 17 C 0.12 1.26 4.33 45.61 0.20 1.45 16 18 H 0.10 1.31 7.46 -2.39 -0.02 1.29 16 19 N -0.69 -5.18 5.14 -439.61 -2.26 -7.44 16 20 C 0.51 6.31 6.95 87.66 0.61 6.92 16 21 O -0.57 -12.96 16.16 -3.04 -0.05 -13.01 16 22 C 0.10 0.74 4.17 44.51 0.19 0.93 16 23 H 0.16 0.13 8.14 -2.38 -0.02 0.11 16 24 C 0.10 0.31 7.70 86.65 0.67 0.97 16 25 N -0.73 -7.92 6.37 -477.34 -3.04 -10.96 16 26 C 0.69 14.38 8.92 179.57 1.60 15.98 16 27 O -0.64 -20.15 18.05 -4.00 -0.07 -20.22 16 28 N -0.72 -11.28 5.60 -460.35 -2.58 -13.86 16 29 C -0.12 -0.88 7.58 31.12 0.24 -0.64 16 30 H 0.27 15.01 8.31 -92.71 -0.77 14.24 16 31 H 0.12 3.28 8.14 -2.39 -0.02 3.27 16 32 H 0.11 3.24 8.14 -2.40 -0.02 3.22 16 33 H 0.41 3.51 6.17 -92.71 -0.57 2.94 16 34 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16 36 H 0.41 0.72 6.15 -92.71 -0.57 0.15 16 37 H 0.14 -0.61 8.14 -2.39 -0.02 -0.63 16 38 H 0.10 0.08 7.72 -2.39 -0.02 0.07 16 39 H 0.44 3.36 8.96 -92.70 -0.83 2.53 16 40 H 0.43 7.02 8.96 -92.70 -0.83 6.19 16 41 H 0.10 0.36 8.14 -2.39 -0.02 0.34 16 42 H 0.13 0.56 8.14 -2.39 -0.02 0.55 16 Total: -1.00 -94.44 371.42 -4.67 -99.11 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: -1.69 Total: 12.80 kcal Atomic # 6 Polarization: 5.16 SS G_CDS: 6.17 Total: 11.33 kcal Atomic # 7 Polarization: -90.73 SS G_CDS: -9.85 Total: -100.57 kcal Atomic # 8 Polarization: -56.58 SS G_CDS: -0.17 Total: -56.74 kcal Atomic # 14 Polarization: 41.35 SS G_CDS: 2.03 Total: 43.38 kcal Atomic # 16 Polarization: -8.14 SS G_CDS: -1.16 Total: -9.30 kcal Total: -94.44 -4.67 -99.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001353714721.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.123 kcal (2) G-P(sol) polarization free energy of solvation -94.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -99.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds