Wall clock time and date at job start Wed Apr 1 2020 01:33:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30280 * 126.28154 * 2 1 4 4 N 1.28670 * 109.38026 * 180.02562 * 3 2 1 5 5 C 1.30280 * 109.38016 * 0.02562 * 4 3 2 6 6 C 1.50698 * 126.27892 * 179.97438 * 5 4 3 7 7 C 1.50694 * 109.47166 * 90.02119 * 6 5 4 8 8 O 1.21283 * 120.00363 * 359.97438 * 7 6 5 9 9 N 1.34784 * 119.99988 * 179.97438 * 7 6 5 10 10 C 1.46494 * 119.99635 * 0.02562 * 9 7 6 11 11 C 1.46493 * 119.99864 * 179.72721 * 9 7 6 12 12 C 1.53000 * 109.47637 * 90.00039 * 11 9 7 13 13 N 1.46493 * 109.47637 * 179.97438 * 12 11 9 14 14 C 1.34775 * 120.00500 * 180.02562 * 13 12 11 15 15 O 1.21284 * 119.99637 * 359.97438 * 14 13 12 16 16 C 1.50697 * 120.00170 * 180.02562 * 14 13 12 17 17 S 1.81005 * 109.46860 * 179.97438 * 16 14 13 18 18 C 1.76205 * 99.99665 * 179.97438 * 17 16 14 19 19 H 1.07998 * 120.00176 * 359.97438 * 18 17 16 20 20 C 1.38803 * 119.99427 * 179.97438 * 18 17 16 21 21 N 1.31626 * 120.00346 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 119.99537 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46954 * 90.00147 * 22 20 18 24 24 H 1.48501 * 109.47010 * 209.99721 * 22 20 18 25 25 H 1.48496 * 109.47278 * 330.00077 * 22 20 18 26 26 O 1.34360 * 126.28435 * 180.29342 * 2 1 3 27 27 H 1.09000 * 109.47676 * 89.97331 * 1 2 3 28 28 H 1.09002 * 109.46912 * 209.97496 * 1 2 3 29 29 H 1.09005 * 109.47256 * 329.96799 * 1 2 3 30 30 H 1.08998 * 109.46890 * 330.02109 * 6 5 4 31 31 H 1.09002 * 109.46875 * 210.01911 * 6 5 4 32 32 H 1.08995 * 109.47693 * 90.00207 * 10 9 7 33 33 H 1.09003 * 109.47006 * 210.00121 * 10 9 7 34 34 H 1.09004 * 109.47665 * 329.99813 * 10 9 7 35 35 H 1.09002 * 109.47192 * 209.99937 * 11 9 7 36 36 H 1.08996 * 109.47342 * 329.99648 * 11 9 7 37 37 H 1.09002 * 109.46747 * 300.00171 * 12 11 9 38 38 H 1.08996 * 109.47074 * 59.99445 * 12 11 9 39 39 H 0.97010 * 119.99974 * 359.97438 * 13 12 11 40 40 H 1.09003 * 109.46772 * 299.99442 * 16 14 13 41 41 H 1.08996 * 109.47586 * 59.99493 * 16 14 13 42 42 H 0.97003 * 120.00200 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2779 1.0502 0.0000 4 7 3.5090 0.6761 -0.0005 5 6 3.5654 -0.6254 -0.0015 6 6 4.8177 -1.4638 -0.0029 7 6 5.2357 -1.7446 1.4174 8 8 4.5816 -1.3067 2.3401 9 7 6.3368 -2.4824 1.6624 10 6 7.1272 -3.0109 0.5480 11 6 6.7465 -2.7504 3.0431 12 6 6.0853 -4.0414 3.5301 13 7 6.4955 -4.3097 4.9106 14 6 6.0340 -5.4023 5.5506 15 8 5.2787 -6.1632 4.9837 16 6 6.4557 -5.6779 6.9709 17 16 5.6734 -7.2052 7.5468 18 6 6.3219 -7.2827 9.1833 19 1 6.9921 -6.5126 9.5357 20 6 5.9713 -8.3337 10.0196 21 7 5.1541 -9.2720 9.5903 22 14 6.6594 -8.4163 11.7543 23 1 5.7481 -7.7003 12.6829 24 1 6.7770 -9.8361 12.1731 25 1 7.9998 -7.7781 11.7862 26 8 2.3021 -1.0830 -0.0055 27 1 -0.3634 0.0005 -1.0276 28 1 -0.3633 -0.8902 0.5135 29 1 -0.3634 0.8897 0.5143 30 1 5.6144 -0.9258 -0.5165 31 1 4.6242 -2.4050 -0.5175 32 1 7.8953 -2.2883 0.2724 33 1 7.5995 -3.9461 0.8489 34 1 6.4751 -3.1917 -0.3065 35 1 7.8303 -2.8589 3.0860 36 1 6.4389 -1.9217 3.6808 37 1 5.0015 -3.9329 3.4873 38 1 6.3929 -4.8701 2.8924 39 1 7.1000 -3.7012 5.3639 40 1 7.5395 -5.7859 7.0136 41 1 6.1476 -4.8495 7.6087 42 1 4.9089 -10.0062 10.1748 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001355477551.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:33:02 Heat of formation + Delta-G solvation = -65.643044 kcal Electronic energy + Delta-G solvation = -25931.194446 eV Core-core repulsion = 21845.620551 eV Total energy + Delta-G solvation = -4085.573895 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.119 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -45.33776 -41.25782 -40.53802 -37.32507 -37.30293 -35.70663 -34.69640 -34.59169 -32.47198 -31.48581 -29.64308 -28.31480 -27.70587 -27.30131 -24.74750 -23.78558 -23.36059 -21.94592 -20.55003 -19.82562 -18.90405 -18.32139 -18.01076 -17.82913 -17.67222 -17.06082 -16.88764 -16.70741 -16.59289 -15.94751 -15.62221 -15.43740 -15.22019 -14.79988 -14.58138 -14.38445 -14.15316 -13.99989 -13.63623 -13.60626 -13.54106 -13.48796 -13.22136 -13.17663 -13.06728 -12.97044 -12.90039 -12.61264 -12.40750 -12.07388 -11.74550 -11.34786 -11.15191 -11.05803 -10.56357 -10.29423 -10.21596 -9.88333 -8.68287 -8.35500 -6.13924 0.01306 1.09699 1.22863 1.25025 1.34710 1.42196 1.45891 1.55556 1.56446 1.80744 2.26335 2.40205 2.73905 2.98680 3.29344 3.31520 3.37157 3.74113 3.79557 3.93430 3.98669 4.04339 4.27639 4.28916 4.31408 4.34753 4.36475 4.49467 4.52046 4.53251 4.67194 4.69336 4.75406 4.88755 5.00681 5.03513 5.24311 5.41231 5.42171 6.14449 6.19141 6.43556 6.89952 7.05750 7.15558 7.18762 8.73743 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.018427 B = 0.001736 C = 0.001646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1519.166157 B =16124.009403 C =17002.379271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.171 3.829 3 N -0.330 5.330 4 N -0.308 5.308 5 C 0.176 3.824 6 C -0.038 4.038 7 C 0.512 3.488 8 O -0.583 6.583 9 N -0.603 5.603 10 C 0.058 3.942 11 C 0.114 3.886 12 C 0.112 3.888 13 N -0.710 5.710 14 C 0.534 3.466 15 O -0.567 6.567 16 C -0.129 4.129 17 S -0.153 6.153 18 C -0.546 4.546 19 H 0.084 0.916 20 C 0.012 3.988 21 N -0.911 5.911 22 Si 1.000 3.000 23 H -0.269 1.269 24 H -0.277 1.277 25 H -0.257 1.257 26 O -0.231 6.231 27 H 0.127 0.873 28 H 0.108 0.892 29 H 0.117 0.883 30 H 0.178 0.822 31 H 0.169 0.831 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.100 0.900 35 H 0.127 0.873 36 H 0.077 0.923 37 H 0.034 0.966 38 H 0.073 0.927 39 H 0.419 0.581 40 H 0.116 0.884 41 H 0.108 0.892 42 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.234 18.421 -25.452 31.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.039 4.039 3 N -0.177 5.177 4 N -0.154 5.154 5 C -0.037 4.037 6 C -0.078 4.078 7 C 0.299 3.701 8 O -0.462 6.462 9 N -0.335 5.335 10 C -0.082 4.082 11 C -0.010 4.010 12 C -0.013 4.013 13 N -0.365 5.365 14 C 0.320 3.680 15 O -0.445 6.445 16 C -0.280 4.280 17 S 0.074 5.926 18 C -0.694 4.694 19 H 0.102 0.898 20 C -0.192 4.192 21 N -0.548 5.548 22 Si 0.821 3.179 23 H -0.195 1.195 24 H -0.202 1.202 25 H -0.181 1.181 26 O -0.110 6.110 27 H 0.145 0.855 28 H 0.126 0.874 29 H 0.135 0.865 30 H 0.195 0.805 31 H 0.186 0.814 32 H 0.107 0.893 33 H 0.106 0.894 34 H 0.118 0.882 35 H 0.145 0.855 36 H 0.096 0.904 37 H 0.052 0.948 38 H 0.091 0.909 39 H 0.257 0.743 40 H 0.134 0.866 41 H 0.126 0.874 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.954 18.500 -25.930 31.913 hybrid contribution 0.688 -0.384 2.056 2.202 sum 2.642 18.116 -23.873 30.085 Atomic orbital electron populations 1.20735 0.76671 1.07072 1.07249 1.29040 0.99480 0.78721 0.96706 1.74306 0.96388 1.27012 1.20002 1.74237 1.13012 1.10305 1.17855 1.27618 0.85799 0.91254 0.98980 1.20453 0.89331 1.02313 0.95703 1.20689 0.80516 0.77852 0.90999 1.90797 1.54505 1.53112 1.47820 1.47723 1.26344 1.51384 1.08038 1.22387 0.96763 1.00989 0.88093 1.21564 1.01337 0.95307 0.82795 1.21614 0.98771 0.98715 0.82242 1.45536 1.50486 1.25720 1.14775 1.20102 0.79606 0.80775 0.87509 1.90693 1.36694 1.48570 1.68520 1.23368 1.05727 1.03302 0.95621 1.85594 1.64154 1.27316 1.15570 1.23209 1.33951 1.13483 0.98745 0.89798 1.26148 0.95034 0.94025 1.04041 1.70183 1.33924 1.12211 1.38458 0.84938 0.78990 0.77805 0.76145 1.19470 1.20233 1.18065 1.84781 1.17735 1.38802 1.69726 0.85512 0.87375 0.86468 0.80453 0.81382 0.89305 0.89385 0.88155 0.85459 0.90442 0.94755 0.90906 0.74332 0.86584 0.87361 0.91985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.49 10.51 71.24 0.75 0.26 16 2 C 0.17 3.41 8.48 88.34 0.75 4.16 16 3 N -0.33 -8.61 12.22 -165.50 -2.02 -10.64 16 4 N -0.31 -8.10 12.22 -165.50 -2.02 -10.12 16 5 C 0.18 3.63 6.97 88.34 0.62 4.25 16 6 C -0.04 -0.38 4.88 29.10 0.14 -0.23 16 7 C 0.51 9.04 7.67 87.65 0.67 9.71 16 8 O -0.58 -17.41 15.62 -3.04 -0.05 -17.46 16 9 N -0.60 -6.90 2.87 -846.78 -2.43 -9.34 16 10 C 0.06 0.08 10.24 127.77 1.31 1.39 16 11 C 0.11 1.58 5.52 86.38 0.48 2.05 16 12 C 0.11 2.47 6.00 86.38 0.52 2.99 16 13 N -0.71 -17.56 5.56 -463.08 -2.57 -20.13 16 14 C 0.53 19.79 7.85 87.66 0.69 20.48 16 15 O -0.57 -26.66 15.86 -3.04 -0.05 -26.71 16 16 C -0.13 -5.08 6.16 71.23 0.44 -4.65 16 17 S -0.15 -8.56 20.57 -56.49 -1.16 -9.73 16 18 C -0.55 -31.22 9.50 67.96 0.65 -30.57 16 19 H 0.08 4.43 7.80 -2.91 -0.02 4.41 16 20 C 0.01 0.70 5.49 84.86 0.47 1.16 16 21 N -0.91 -56.15 13.22 21.65 0.29 -55.87 16 22 Si 1.00 43.62 29.55 68.60 2.03 45.64 16 23 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 24 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 25 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 26 O -0.23 -4.94 10.87 -3.60 -0.04 -4.97 16 27 H 0.13 0.38 8.14 -2.39 -0.02 0.36 16 28 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.12 0.76 8.14 -2.38 -0.02 0.74 16 30 H 0.18 0.43 8.11 -2.39 -0.02 0.41 16 31 H 0.17 0.33 7.40 -2.39 -0.02 0.31 16 32 H 0.09 -0.20 8.14 -2.39 -0.02 -0.22 16 33 H 0.09 0.09 8.07 -2.39 -0.02 0.08 16 34 H 0.10 -0.32 6.44 -2.38 -0.02 -0.33 16 35 H 0.13 0.85 8.07 -2.39 -0.02 0.83 16 36 H 0.08 1.38 7.42 -2.39 -0.02 1.37 16 37 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.42 7.07 8.47 -92.70 -0.79 6.29 16 40 H 0.12 3.99 8.14 -2.39 -0.02 3.97 16 41 H 0.11 3.89 8.14 -2.40 -0.02 3.87 16 42 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 Total: -1.00 -99.52 384.40 -0.29 -99.81 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: 0.28 Total: 8.52 kcal Atomic # 6 Polarization: 3.52 SS G_CDS: 7.47 Total: 10.99 kcal Atomic # 7 Polarization: -97.33 SS G_CDS: -8.77 Total: -106.10 kcal Atomic # 8 Polarization: -49.01 SS G_CDS: -0.13 Total: -49.14 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.64 kcal Atomic # 16 Polarization: -8.56 SS G_CDS: -1.16 Total: -9.73 kcal Total: -99.52 -0.29 -99.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001355477551.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.163 kcal (2) G-P(sol) polarization free energy of solvation -99.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -99.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds