Wall clock time and date at job start Wed Apr 1 2020 00:25:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86801 * 119.99948 * 2 1 4 4 H 1.48505 * 109.46879 * 269.99898 * 3 2 1 5 5 H 1.48502 * 109.47368 * 29.99755 * 3 2 1 6 6 H 1.48496 * 109.46971 * 150.00124 * 3 2 1 7 7 C 1.38795 * 119.99992 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00287 * 180.02562 * 7 2 1 9 9 S 1.76203 * 120.00017 * 359.97438 * 7 2 1 10 10 C 1.81000 * 100.00050 * 179.97438 * 9 7 2 11 11 C 1.50696 * 109.47142 * 180.02562 * 10 9 7 12 12 O 1.21283 * 119.99885 * 359.97438 * 11 10 9 13 13 N 1.34776 * 120.00049 * 180.02562 * 11 10 9 14 14 C 1.47588 * 134.49375 * 180.02562 * 13 11 10 15 15 C 1.53939 * 86.11490 * 155.35802 * 14 13 11 16 16 C 1.53006 * 113.74007 * 137.95564 * 15 14 13 17 17 N 1.46504 * 109.46883 * 174.99955 * 16 15 14 18 18 C 1.34775 * 119.99531 * 179.97438 * 17 16 15 19 19 O 1.21279 * 120.00300 * 0.02562 * 18 17 16 20 20 C 1.50703 * 119.99773 * 179.97438 * 18 17 16 21 21 H 1.08998 * 110.49281 * 321.24734 * 20 18 17 22 22 C 1.54097 * 110.54879 * 84.10585 * 20 18 17 23 23 N 1.47061 * 103.86109 * 118.59132 * 22 20 18 24 24 C 1.33943 * 109.17939 * 0.02562 * 23 22 20 25 25 O 1.21585 * 123.03908 * 179.97438 * 24 23 22 26 26 N 1.33946 * 113.91924 * 359.97438 * 24 23 22 27 27 C 1.47580 * 134.49153 * 359.97438 * 13 11 10 28 28 H 0.97000 * 120.00064 * 0.02562 * 1 2 3 29 29 H 1.09003 * 109.46550 * 60.00321 * 10 9 7 30 30 H 1.09002 * 109.47347 * 300.00355 * 10 9 7 31 31 H 1.09003 * 113.76693 * 41.05388 * 14 13 11 32 32 H 1.08998 * 113.76396 * 269.66112 * 14 13 11 33 33 H 1.09005 * 113.74232 * 269.15116 * 15 14 13 34 34 H 1.09001 * 109.47002 * 294.99452 * 16 15 14 35 35 H 1.08993 * 109.46955 * 54.99889 * 16 15 14 36 36 H 0.96992 * 119.99966 * 359.97438 * 17 16 15 37 37 H 1.08996 * 110.54841 * 237.18976 * 22 20 18 38 38 H 1.08999 * 110.54638 * 0.02562 * 22 20 18 39 39 H 0.97003 * 125.40767 * 179.97438 * 23 22 20 40 40 H 0.97001 * 125.41424 * 179.97438 * 26 24 23 41 41 H 1.09012 * 113.76784 * 90.34405 * 27 13 11 42 42 H 1.08992 * 113.77167 * 318.94959 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0102 -1.2020 0.0005 8 1 3.0902 -1.2021 0.0010 9 16 1.1292 -2.7280 0.0019 10 6 2.5158 -3.8914 0.0013 11 6 1.9873 -5.3027 0.0018 12 8 0.7910 -5.5022 0.0028 13 7 2.8441 -6.3431 0.0020 14 6 2.6889 -7.8108 0.0019 15 6 4.0883 -7.8538 -0.6381 16 6 4.9915 -8.9509 -0.0709 17 7 6.2484 -8.9857 -0.8228 18 6 7.2035 -9.8793 -0.4975 19 8 7.0223 -10.6548 0.4171 20 6 8.4963 -9.9155 -1.2712 21 1 8.3109 -9.7475 -2.3321 22 6 9.4861 -8.8711 -0.7199 23 7 10.6282 -9.6760 -0.2610 24 6 10.3756 -10.9708 -0.4930 25 8 11.1557 -11.8594 -0.2102 26 7 9.1859 -11.1980 -1.0649 27 6 4.3142 -6.4723 0.0014 28 1 -0.4850 0.8400 -0.0004 29 1 3.1250 -3.7309 0.8909 30 1 3.1238 -3.7317 -0.8891 31 1 1.8948 -8.1685 -0.6535 32 1 2.6483 -8.2482 0.9994 33 1 4.0731 -7.8371 -1.7279 34 1 5.2013 -8.7425 0.9782 35 1 4.4900 -9.9148 -0.1567 36 1 6.3932 -8.3658 -1.5545 37 1 9.7945 -8.1833 -1.5071 38 1 9.0428 -8.3266 0.1138 39 1 11.4364 -9.3249 0.1446 40 1 8.8351 -12.0698 -1.3054 41 1 4.7517 -6.5161 0.9989 42 1 4.8174 -5.7617 -0.6542 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001356830542.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:25:22 Heat of formation + Delta-G solvation = -44.613950 kcal Electronic energy + Delta-G solvation = -25986.994368 eV Core-core repulsion = 21902.332364 eV Total energy + Delta-G solvation = -4084.662005 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.119 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.86151 -40.52457 -39.58909 -37.71706 -36.69945 -35.20263 -33.56214 -32.48744 -31.39285 -30.06932 -28.74940 -26.47942 -26.05314 -25.44780 -24.15595 -22.30610 -21.49676 -20.94735 -19.17371 -18.60946 -18.18661 -17.74905 -17.02833 -16.80175 -16.60765 -16.19475 -16.00529 -15.51500 -15.38778 -14.90798 -14.85768 -14.68351 -14.40955 -14.11407 -13.90699 -13.74969 -13.53906 -13.16197 -12.96461 -12.90630 -12.56024 -12.29200 -12.00899 -11.71474 -11.22343 -11.11410 -11.07708 -10.90242 -10.81638 -10.70842 -9.94929 -9.88133 -9.70392 -9.49711 -9.42551 -9.12348 -8.71702 -8.30485 -6.57059 -6.27186 -3.98641 1.81713 2.14919 2.40334 2.63323 2.76059 2.97031 3.17492 3.18911 3.25403 3.41312 3.47422 3.58855 3.80917 3.99935 4.14387 4.14761 4.30208 4.47646 4.58769 4.64895 4.77604 4.87575 5.00516 5.07991 5.13235 5.15798 5.20732 5.27714 5.40518 5.49981 5.67708 5.78469 5.86694 5.92547 6.05465 6.44327 6.57878 6.77421 6.85313 7.53313 7.53584 7.70419 8.10483 8.29241 8.44942 9.17929 10.80228 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.017369 B = 0.001759 C = 0.001614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1611.716438 B =15916.668474 C =17349.055840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.536 4.536 8 H 0.073 0.927 9 S -0.061 6.061 10 C -0.145 4.145 11 C 0.556 3.444 12 O -0.513 6.513 13 N -0.652 5.652 14 C 0.119 3.881 15 C -0.138 4.138 16 C 0.128 3.872 17 N -0.723 5.723 18 C 0.500 3.500 19 O -0.518 6.518 20 C 0.103 3.897 21 H 0.118 0.882 22 C 0.104 3.896 23 N -0.739 5.739 24 C 0.706 3.294 25 O -0.582 6.582 26 N -0.715 5.715 27 C 0.107 3.893 28 H 0.269 0.731 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.111 0.889 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.405 0.595 37 H 0.099 0.901 38 H 0.088 0.912 39 H 0.434 0.566 40 H 0.435 0.565 41 H 0.086 0.914 42 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.908 -18.326 -5.350 26.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.746 3.254 4 H -0.202 1.202 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.684 4.684 8 H 0.091 0.909 9 S 0.166 5.834 10 C -0.295 4.295 11 C 0.345 3.655 12 O -0.387 6.387 13 N -0.392 5.392 14 C -0.005 4.005 15 C -0.158 4.158 16 C 0.004 3.996 17 N -0.376 5.376 18 C 0.283 3.717 19 O -0.392 6.392 20 C -0.007 4.007 21 H 0.136 0.864 22 C -0.022 4.022 23 N -0.402 5.402 24 C 0.404 3.596 25 O -0.459 6.459 26 N -0.378 5.378 27 C -0.016 4.016 28 H 0.079 0.921 29 H 0.106 0.894 30 H 0.106 0.894 31 H 0.104 0.896 32 H 0.103 0.897 33 H 0.129 0.871 34 H 0.095 0.905 35 H 0.096 0.904 36 H 0.240 0.760 37 H 0.117 0.883 38 H 0.107 0.893 39 H 0.276 0.724 40 H 0.277 0.723 41 H 0.104 0.896 42 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 17.046 -19.342 -4.516 26.174 hybrid contribution 2.006 1.589 -0.261 2.572 sum 19.052 -17.753 -4.776 26.476 Atomic orbital electron populations 1.70014 1.05963 1.27531 1.46672 1.24997 0.95039 0.99052 0.94484 0.86160 0.79400 0.81525 0.78361 1.20240 1.20710 1.19696 1.22843 0.94863 0.91554 1.59175 0.90928 1.85439 1.04854 0.96383 1.96724 1.23469 1.06529 0.94783 1.04750 1.20066 0.85507 0.85216 0.74693 1.90724 1.14885 1.84966 1.48080 1.49969 1.07296 1.05773 1.76115 1.22996 0.95692 0.81011 1.00776 1.23476 0.95953 0.94521 1.01815 1.21403 0.82978 0.99145 0.96062 1.45978 1.17018 1.37475 1.37117 1.20777 0.85103 0.81086 0.84716 1.90795 1.79531 1.39587 1.29331 1.21863 0.91609 0.86079 1.01196 0.86422 1.22260 0.85844 0.93254 1.00803 1.45060 1.21510 1.06034 1.67627 1.15860 0.82210 0.83510 0.77976 1.91023 1.50301 1.45761 1.58793 1.44831 1.17799 1.08447 1.66722 1.23268 0.82397 0.95127 1.00815 0.92120 0.89362 0.89363 0.89644 0.89666 0.87100 0.90469 0.90430 0.76046 0.88337 0.89336 0.72382 0.72273 0.89590 0.89706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.67 13.22 55.49 0.73 -24.94 16 2 C 0.07 2.06 5.49 -17.43 -0.10 1.96 16 3 Si 0.92 20.84 29.55 -169.99 -5.02 15.82 16 4 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 5 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 6 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 7 C -0.54 -14.90 9.50 30.94 0.29 -14.60 16 8 H 0.07 1.90 7.80 -52.49 -0.41 1.49 16 9 S -0.06 -1.61 20.57 -107.50 -2.21 -3.83 16 10 C -0.14 -2.83 5.91 36.00 0.21 -2.62 16 11 C 0.56 10.16 8.07 -10.99 -0.09 10.07 16 12 O -0.51 -11.62 16.59 5.55 0.09 -11.53 16 13 N -0.65 -8.08 3.61 -178.40 -0.64 -8.72 16 14 C 0.12 1.03 8.40 -2.97 -0.02 1.01 16 15 C -0.14 -0.69 3.94 -89.71 -0.35 -1.05 16 16 C 0.13 0.57 5.53 -4.04 -0.02 0.55 16 17 N -0.72 -2.10 5.56 -60.29 -0.33 -2.44 16 18 C 0.50 2.70 6.93 -10.98 -0.08 2.62 16 19 O -0.52 -5.44 16.60 5.56 0.09 -5.34 16 20 C 0.10 0.32 4.17 -68.20 -0.28 0.03 16 21 H 0.12 -0.04 8.14 -51.93 -0.42 -0.46 16 22 C 0.10 0.22 7.70 -3.16 -0.02 0.20 16 23 N -0.74 -3.94 6.37 -64.70 -0.41 -4.35 16 24 C 0.71 6.49 8.92 -88.40 -0.79 5.70 16 25 O -0.58 -8.10 18.05 5.29 0.10 -8.00 16 26 N -0.72 -4.58 5.63 -59.33 -0.33 -4.92 16 27 C 0.11 0.76 8.17 -2.99 -0.02 0.74 16 28 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 29 H 0.09 1.61 8.14 -51.91 -0.42 1.18 16 30 H 0.09 1.57 8.14 -51.92 -0.42 1.15 16 31 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.09 0.66 8.10 -51.93 -0.42 0.24 16 33 H 0.11 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.08 0.42 7.84 -51.93 -0.41 0.02 16 35 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 36 H 0.40 -0.02 8.47 -40.82 -0.35 -0.36 16 37 H 0.10 -0.07 8.14 -51.93 -0.42 -0.49 16 38 H 0.09 0.17 7.72 -51.93 -0.40 -0.23 16 39 H 0.43 1.68 8.96 -40.82 -0.37 1.31 16 40 H 0.43 2.54 8.96 -40.82 -0.37 2.17 16 41 H 0.09 0.54 7.89 -51.92 -0.41 0.13 16 42 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 LS Contribution 379.00 15.07 5.71 5.71 Total: -1.00 -42.33 379.00 -9.15 -51.48 By element: Atomic # 1 Polarization: 2.09 SS G_CDS: -5.64 Total: -3.55 kcal Atomic # 6 Polarization: 5.89 SS G_CDS: -1.28 Total: 4.62 kcal Atomic # 7 Polarization: -44.38 SS G_CDS: -0.99 Total: -45.37 kcal Atomic # 8 Polarization: -25.16 SS G_CDS: 0.28 Total: -24.88 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -42.33 -9.15 -51.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001356830542.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.869 kcal (2) G-P(sol) polarization free energy of solvation -42.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds