Wall clock time and date at job start Wed Apr 1 2020 00:25:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86793 * 120.00295 * 2 1 4 4 H 1.48503 * 109.47243 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47064 * 299.99573 * 3 2 1 6 6 H 1.48497 * 109.47347 * 59.99752 * 3 2 1 7 7 C 1.38806 * 119.99474 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99460 * 180.02562 * 7 2 1 9 9 S 1.76197 * 120.00196 * 0.02562 * 7 2 1 10 10 C 1.80996 * 99.99918 * 179.97438 * 9 7 2 11 11 C 1.50707 * 109.47211 * 179.97438 * 10 9 7 12 12 O 1.21284 * 119.99706 * 0.02562 * 11 10 9 13 13 N 1.34777 * 120.00013 * 179.97438 * 11 10 9 14 14 C 1.47585 * 134.48894 * 180.02562 * 13 11 10 15 15 C 1.53946 * 86.11055 * 155.36201 * 14 13 11 16 16 C 1.53002 * 113.74066 * 137.95743 * 15 14 13 17 17 N 1.46497 * 109.47297 * 176.92123 * 16 15 14 18 18 C 1.34777 * 119.99995 * 179.97438 * 17 16 15 19 19 O 1.21287 * 120.00008 * 0.02562 * 18 17 16 20 20 C 1.50695 * 120.00065 * 179.97438 * 18 17 16 21 21 H 1.09000 * 110.60389 * 42.78188 * 20 18 17 22 22 C 1.54098 * 110.55014 * 280.00289 * 20 18 17 23 23 N 1.47056 * 103.86466 * 241.40431 * 22 20 18 24 24 C 1.33948 * 109.17577 * 0.02562 * 23 22 20 25 25 O 1.21588 * 123.04223 * 179.97438 * 24 23 22 26 26 N 1.33945 * 113.91908 * 359.97438 * 24 23 22 27 27 C 1.47803 * 134.45750 * 359.87163 * 13 11 10 28 28 H 0.97007 * 119.99749 * 359.97438 * 1 2 3 29 29 H 1.09004 * 109.47312 * 60.00585 * 10 9 7 30 30 H 1.08999 * 109.47321 * 300.00066 * 10 9 7 31 31 H 1.08996 * 113.76791 * 41.06016 * 14 13 11 32 32 H 1.08997 * 113.87087 * 269.67534 * 14 13 11 33 33 H 1.09005 * 113.74137 * 269.14572 * 15 14 13 34 34 H 1.09001 * 109.47329 * 56.91517 * 16 15 14 35 35 H 1.09006 * 109.46846 * 296.92382 * 16 15 14 36 36 H 0.96996 * 120.00332 * 0.02562 * 17 16 15 37 37 H 1.08998 * 110.55044 * 122.81015 * 22 20 18 38 38 H 1.09002 * 110.54888 * 359.97438 * 22 20 18 39 39 H 0.96996 * 125.41090 * 179.73319 * 23 22 20 40 40 H 0.97001 * 125.41137 * 180.02562 * 26 24 23 41 41 H 1.09000 * 113.77243 * 90.37861 * 27 13 11 42 42 H 1.09005 * 113.84015 * 318.91632 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7104 1.3462 -0.0006 5 1 1.8917 2.3963 -1.2126 6 1 1.8916 2.3964 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 16 1.1291 -2.7280 0.0005 10 6 2.5156 -3.8915 0.0005 11 6 1.9871 -5.3028 0.0012 12 8 0.7907 -5.5023 0.0011 13 7 2.8438 -6.3433 0.0008 14 6 2.6885 -7.8109 0.0007 15 6 4.0875 -7.8539 -0.6401 16 6 4.9910 -8.9511 -0.0736 17 7 6.2655 -8.9556 -0.7961 18 6 7.2240 -9.8439 -0.4661 19 8 7.0312 -10.6397 0.4285 20 6 8.5347 -9.8489 -1.2096 21 1 8.8904 -8.8307 -1.3670 22 6 8.3904 -10.5856 -2.5554 23 7 9.3280 -11.7128 -2.4424 24 6 9.9292 -11.6668 -1.2463 25 8 10.7554 -12.4837 -0.8877 26 7 9.5380 -10.6395 -0.4810 27 6 4.3162 -6.4718 -0.0026 28 1 -0.4850 0.8401 0.0004 29 1 3.1242 -3.7315 0.8906 30 1 3.1242 -3.7315 -0.8894 31 1 1.8940 -8.1685 -0.6543 32 1 2.6480 -8.2502 0.9974 33 1 4.0718 -7.8372 -1.7299 34 1 4.5039 -9.9192 -0.1902 35 1 5.1736 -8.7613 0.9841 36 1 6.4199 -8.3189 -1.5113 37 1 8.6744 -9.9331 -3.3811 38 1 7.3708 -10.9481 -2.6857 39 1 9.4830 -12.3854 -3.1239 40 1 9.8647 -10.4475 0.4119 41 1 4.7558 -6.5149 0.9939 42 1 4.8189 -5.7625 -0.6602 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001356830543.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:25:25 Heat of formation + Delta-G solvation = -83.055460 kcal Electronic energy + Delta-G solvation = -25938.929291 eV Core-core repulsion = 21852.600337 eV Total energy + Delta-G solvation = -4086.328954 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.119 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.31345 -41.35263 -40.21904 -38.90395 -37.35441 -35.73749 -34.58783 -33.97125 -32.38695 -30.89079 -29.58874 -27.71315 -27.15031 -26.61735 -24.54341 -22.80217 -22.01738 -21.52832 -20.34013 -19.51185 -19.10331 -18.52505 -17.96055 -17.54602 -17.18339 -17.00161 -16.87857 -16.67692 -16.46074 -16.17310 -15.78435 -15.65421 -15.08895 -15.02558 -14.79329 -14.62464 -14.32092 -14.00087 -13.86473 -13.63244 -13.45633 -13.21401 -13.15324 -12.91738 -12.90193 -12.58255 -12.31263 -11.84783 -11.71438 -11.57539 -11.33993 -11.16088 -10.87446 -10.54057 -10.27741 -10.07958 -9.80693 -9.72870 -8.68432 -8.34937 -6.13721 1.22730 1.42127 1.44237 1.44851 1.56016 1.59014 1.72622 1.97154 2.01069 2.23221 2.27292 2.99591 3.08882 3.21350 3.29586 3.36274 3.61371 3.71572 3.82799 4.05673 4.12860 4.21591 4.28442 4.39882 4.45722 4.51514 4.61711 4.64459 4.71093 4.76238 4.81892 4.86642 4.96084 5.26195 5.41875 5.43954 5.92477 6.19813 6.22005 6.31615 6.56013 6.60676 7.06433 7.12709 7.22793 7.53191 8.74580 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.020020 B = 0.001676 C = 0.001582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.284687 B =16702.777170 C =17696.281697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.012 3.988 3 Si 1.000 3.000 4 H -0.254 1.254 5 H -0.274 1.274 6 H -0.276 1.276 7 C -0.544 4.544 8 H 0.085 0.915 9 S -0.157 6.157 10 C -0.117 4.117 11 C 0.551 3.449 12 O -0.573 6.573 13 N -0.652 5.652 14 C 0.106 3.894 15 C -0.102 4.102 16 C 0.135 3.865 17 N -0.703 5.703 18 C 0.502 3.498 19 O -0.576 6.576 20 C 0.104 3.896 21 H 0.164 0.836 22 C 0.103 3.897 23 N -0.732 5.732 24 C 0.692 3.308 25 O -0.643 6.643 26 N -0.717 5.717 27 C 0.102 3.898 28 H 0.271 0.729 29 H 0.103 0.897 30 H 0.110 0.890 31 H 0.079 0.921 32 H 0.095 0.905 33 H 0.133 0.867 34 H 0.074 0.926 35 H 0.069 0.931 36 H 0.424 0.576 37 H 0.141 0.859 38 H 0.096 0.904 39 H 0.439 0.561 40 H 0.434 0.566 41 H 0.101 0.899 42 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.649 -18.915 -8.382 29.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.192 4.192 3 Si 0.821 3.179 4 H -0.178 1.178 5 H -0.199 1.199 6 H -0.201 1.201 7 C -0.692 4.692 8 H 0.103 0.897 9 S 0.070 5.930 10 C -0.268 4.268 11 C 0.340 3.660 12 O -0.452 6.452 13 N -0.388 5.388 14 C -0.016 4.016 15 C -0.121 4.121 16 C 0.010 3.990 17 N -0.356 5.356 18 C 0.287 3.713 19 O -0.454 6.454 20 C -0.005 4.005 21 H 0.182 0.818 22 C -0.022 4.022 23 N -0.395 5.395 24 C 0.390 3.610 25 O -0.525 6.525 26 N -0.377 5.377 27 C -0.019 4.019 28 H 0.080 0.920 29 H 0.122 0.878 30 H 0.128 0.872 31 H 0.097 0.903 32 H 0.113 0.887 33 H 0.151 0.849 34 H 0.092 0.908 35 H 0.088 0.912 36 H 0.263 0.737 37 H 0.159 0.841 38 H 0.114 0.886 39 H 0.282 0.718 40 H 0.276 0.724 41 H 0.119 0.881 42 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 18.840 -19.891 -7.590 28.429 hybrid contribution 1.234 1.246 0.285 1.777 sum 20.074 -18.645 -7.305 28.354 Atomic orbital electron populations 1.70197 1.08044 1.28561 1.48039 1.26150 0.95961 1.03383 0.93723 0.84890 0.78715 0.76226 0.78022 1.17756 1.19918 1.20134 1.23223 0.95354 0.91779 1.58809 0.89735 1.85650 1.10810 0.99476 1.97041 1.23260 1.03261 0.93906 1.06404 1.19800 0.85302 0.85932 0.74976 1.90694 1.17379 1.85781 1.51366 1.50075 1.09373 1.06123 1.73231 1.23334 0.97999 0.78382 1.01912 1.23206 0.93068 0.93250 1.02620 1.21214 0.82934 0.98529 0.96309 1.45750 1.14730 1.36342 1.38822 1.21180 0.86279 0.80261 0.83609 1.90790 1.81042 1.40657 1.32944 1.22228 0.86280 1.00774 0.91229 0.81849 1.22643 0.95456 0.88152 0.95906 1.45088 1.44867 1.32519 1.17002 1.16246 0.80930 0.81438 0.82362 1.90965 1.39643 1.44924 1.76975 1.44895 1.43731 1.29051 1.20050 1.23752 0.78981 0.96630 1.02564 0.92006 0.87838 0.87182 0.90253 0.88677 0.84895 0.90813 0.91225 0.73734 0.84100 0.88589 0.71769 0.72429 0.88133 0.87598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.26 13.22 21.65 0.29 -54.98 16 2 C 0.01 0.70 5.49 84.86 0.47 1.16 16 3 Si 1.00 42.36 29.55 68.60 2.03 44.39 16 4 H -0.25 -9.91 7.11 99.48 0.71 -9.21 16 5 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 6 H -0.28 -11.43 7.11 99.48 0.71 -10.72 16 7 C -0.54 -30.30 9.50 67.96 0.65 -29.66 16 8 H 0.08 4.33 7.80 -2.91 -0.02 4.31 16 9 S -0.16 -8.60 20.57 -56.49 -1.16 -9.76 16 10 C -0.12 -4.49 5.91 71.24 0.42 -4.07 16 11 C 0.55 19.94 8.08 87.66 0.71 20.65 16 12 O -0.57 -26.81 16.59 -3.04 -0.05 -26.87 16 13 N -0.65 -14.77 3.61 -836.09 -3.02 -17.79 16 14 C 0.11 1.61 8.41 86.49 0.73 2.34 16 15 C -0.10 -0.61 3.93 -10.14 -0.04 -0.65 16 16 C 0.13 0.72 5.51 86.38 0.48 1.20 16 17 N -0.70 -1.02 5.56 -463.05 -2.57 -3.60 16 18 C 0.50 3.89 6.95 87.66 0.61 4.50 16 19 O -0.58 -11.33 16.56 -3.05 -0.05 -11.38 16 20 C 0.10 0.26 4.17 44.51 0.19 0.45 16 21 H 0.16 -0.97 8.14 -2.39 -0.02 -0.99 16 22 C 0.10 -0.05 7.70 86.64 0.67 0.62 16 23 N -0.73 -5.96 6.37 -477.34 -3.04 -9.01 16 24 C 0.69 12.24 8.92 179.57 1.60 13.84 16 25 O -0.64 -18.55 18.05 -3.99 -0.07 -18.63 16 26 N -0.72 -8.34 5.60 -460.36 -2.58 -10.92 16 27 C 0.10 1.05 8.18 86.43 0.71 1.75 16 28 H 0.27 15.19 8.31 -92.70 -0.77 14.42 16 29 H 0.10 3.61 8.14 -2.39 -0.02 3.59 16 30 H 0.11 3.69 8.14 -2.40 -0.02 3.67 16 31 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.10 1.29 8.10 -2.39 -0.02 1.27 16 33 H 0.13 0.33 8.14 -2.38 -0.02 0.31 16 34 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 35 H 0.07 0.56 7.88 -2.38 -0.02 0.54 16 36 H 0.42 -2.52 8.47 -92.71 -0.79 -3.31 16 37 H 0.14 -1.15 8.14 -2.39 -0.02 -1.17 16 38 H 0.10 -0.14 7.72 -2.39 -0.02 -0.16 16 39 H 0.44 2.40 8.96 -92.71 -0.83 1.57 16 40 H 0.43 5.10 8.96 -92.71 -0.83 4.27 16 41 H 0.10 0.85 7.92 -2.39 -0.02 0.83 16 42 H 0.11 0.75 8.14 -2.38 -0.02 0.73 16 Total: -1.00 -100.73 379.02 -4.41 -105.14 By element: Atomic # 1 Polarization: 2.62 SS G_CDS: -1.35 Total: 1.27 kcal Atomic # 6 Polarization: 4.95 SS G_CDS: 7.17 Total: 12.12 kcal Atomic # 7 Polarization: -85.36 SS G_CDS: -10.93 Total: -96.29 kcal Atomic # 8 Polarization: -56.70 SS G_CDS: -0.17 Total: -56.87 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 2.03 Total: 44.39 kcal Atomic # 16 Polarization: -8.60 SS G_CDS: -1.16 Total: -9.76 kcal Total: -100.73 -4.41 -105.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001356830543.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.083 kcal (2) G-P(sol) polarization free energy of solvation -100.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -105.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds