Wall clock time and date at job start Wed Apr 1 2020 01:13:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 108.57999 * 2 1 4 4 C 1.50702 * 109.47166 * 300.70040 * 3 2 1 5 5 O 1.21294 * 119.99973 * 359.97438 * 4 3 2 6 6 N 1.34775 * 119.99883 * 180.02562 * 4 3 2 7 7 C 1.40153 * 119.99921 * 179.97438 * 6 4 3 8 8 C 1.40408 * 125.97238 * 359.70991 * 7 6 4 9 9 C 1.35243 * 107.86886 * 179.82846 * 8 7 6 10 10 N 1.34970 * 107.85844 * 0.43629 * 9 8 7 11 11 C 1.46498 * 125.97550 * 179.69399 * 10 9 8 12 12 C 1.50700 * 109.47530 * 125.01542 * 11 10 9 13 13 H 1.08006 * 119.99946 * 359.97438 * 12 11 10 14 14 C 1.37872 * 120.00220 * 179.97438 * 12 11 10 15 15 N 1.31517 * 120.00103 * 359.97438 * 14 12 11 16 16 Si 1.86806 * 120.00024 * 179.97438 * 14 12 11 17 17 H 1.48496 * 109.47001 * 359.97438 * 16 14 12 18 18 H 1.48499 * 109.47137 * 119.99926 * 16 14 12 19 19 H 1.48498 * 109.47319 * 239.99925 * 16 14 12 20 20 N 1.31223 * 125.97315 * 180.02562 * 7 6 4 21 21 C 1.53204 * 108.64279 * 117.99441 * 2 1 3 22 22 C 1.55557 * 106.23492 * 148.66037 * 21 2 1 23 23 S 1.83896 * 99.64660 * 323.01063 * 22 21 2 24 24 O 1.42098 * 111.46878 * 144.08463 * 23 22 21 25 25 O 1.42097 * 111.47035 * 283.94214 * 23 22 21 26 26 N 1.46446 * 108.64664 * 242.16912 * 2 1 3 27 27 H 1.09001 * 109.46801 * 302.00384 * 1 2 3 28 28 H 1.09001 * 109.46998 * 61.99980 * 1 2 3 29 29 H 1.09000 * 109.47050 * 182.00272 * 1 2 3 30 30 H 1.09005 * 109.46835 * 60.70133 * 3 2 1 31 31 H 1.09003 * 109.47105 * 180.69494 * 3 2 1 32 32 H 0.97003 * 119.99817 * 359.97438 * 6 4 3 33 33 H 1.07997 * 126.06591 * 359.97438 * 8 7 6 34 34 H 1.07997 * 126.07388 * 180.16016 * 9 8 7 35 35 H 1.09007 * 109.46772 * 245.00827 * 11 10 9 36 36 H 1.08996 * 109.47408 * 5.01232 * 11 10 9 37 37 H 0.96999 * 119.99937 * 180.02562 * 15 14 12 38 38 H 1.08996 * 110.10356 * 267.85716 * 21 2 1 39 39 H 1.09002 * 110.10019 * 29.40693 * 21 2 1 40 40 H 1.09000 * 111.37366 * 80.61890 * 22 21 2 41 41 H 1.09004 * 111.36996 * 205.40876 * 22 21 2 42 42 H 0.96993 * 126.08612 * 57.14885 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0176 1.4503 0.0000 4 6 1.4900 2.1576 -1.2217 5 8 0.7931 1.5603 -2.0147 6 7 1.7935 3.4535 -1.4337 7 6 1.3033 4.1111 -2.5701 8 6 0.4947 3.5428 -3.5674 9 6 0.2344 4.5003 -4.4863 10 7 0.8603 5.6304 -4.0952 11 6 0.8476 6.9113 -4.8061 12 6 0.3672 7.9965 -3.8775 13 1 0.0977 7.7561 -2.8596 14 6 0.2715 9.2963 -4.3272 15 7 0.6001 9.5892 -5.5665 16 14 -0.3247 10.6415 -3.1762 17 1 -0.6292 10.0557 -1.8461 18 1 0.7323 11.6745 -3.0326 19 1 -1.5519 11.2633 -3.7353 20 7 1.5247 5.3641 -2.8911 21 6 2.0198 -0.6814 1.2818 22 6 3.3675 -1.3693 0.9210 23 16 2.9801 -1.9290 -0.7873 24 8 4.1178 -1.8406 -1.6341 25 8 2.1363 -3.0723 -0.7813 26 7 1.9983 -0.6478 -1.2271 27 1 -0.3633 0.5447 0.8715 28 1 -0.3633 0.4825 -0.9074 29 1 -0.3633 -1.0270 0.0359 30 1 1.6566 1.9549 0.8963 31 1 3.1074 1.4672 -0.0125 32 1 2.3512 3.9310 -0.7997 33 1 0.1412 2.5227 -3.5946 34 1 -0.3640 4.3807 -5.3773 35 1 1.8553 7.1464 -5.1491 36 1 0.1783 6.8443 -5.6637 37 1 0.5332 10.5038 -5.8828 38 1 2.1758 0.0609 2.0646 39 1 1.2946 -1.4256 1.6110 40 1 4.1919 -0.6562 0.9280 41 1 3.5710 -2.2141 1.5791 42 1 1.7781 -0.3817 -2.1334 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361502736.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:13:30 Heat of formation + Delta-G solvation = -42.498017 kcal Electronic energy + Delta-G solvation = -27619.688572 eV Core-core repulsion = 23535.118321 eV Total energy + Delta-G solvation = -4084.570251 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.119 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.21686 -41.06281 -38.79356 -37.99876 -36.87611 -36.13708 -35.24945 -32.91650 -32.59077 -31.45314 -30.92722 -29.29432 -28.23558 -25.25069 -24.76639 -23.08567 -22.02516 -21.17409 -20.82021 -20.43581 -18.70318 -18.45719 -18.33225 -17.77503 -17.29152 -16.87772 -16.76273 -16.59238 -16.18983 -15.84679 -15.64423 -15.24431 -14.93298 -14.60074 -14.30012 -14.28945 -14.02791 -13.81401 -13.72776 -13.58486 -13.23198 -13.17050 -13.02603 -12.89974 -12.74591 -12.54613 -12.51118 -12.30568 -12.13682 -11.95838 -11.85013 -11.51208 -11.37005 -11.31325 -10.73510 -10.54072 -10.32788 -9.72014 -9.08146 -8.33635 -6.48189 -0.61500 1.00699 1.37397 1.37997 1.43960 1.52015 1.53876 1.74303 2.30257 2.31556 2.46937 2.76066 2.98019 3.10327 3.39646 3.59712 3.67462 3.76699 4.03190 4.10284 4.29553 4.36546 4.53876 4.69360 4.73520 4.76730 4.82435 4.90900 4.92011 4.94310 5.01895 5.02474 5.12675 5.20594 5.33879 5.56027 5.67131 5.79499 6.00088 6.26875 6.28850 6.36467 6.64661 7.07317 7.22098 7.25687 8.74155 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.027626 B = 0.002177 C = 0.002117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.297345 B =12858.768051 C =13220.691510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.152 3.848 3 C -0.140 4.140 4 C 0.517 3.483 5 O -0.538 6.538 6 N -0.627 5.627 7 C 0.266 3.734 8 C -0.291 4.291 9 C 0.050 3.950 10 N -0.346 5.346 11 C 0.272 3.728 12 C -0.545 4.545 13 H 0.053 0.947 14 C 0.016 3.984 15 N -0.922 5.922 16 Si 0.974 3.026 17 H -0.272 1.272 18 H -0.273 1.273 19 H -0.271 1.271 20 N -0.348 5.348 21 C -0.114 4.114 22 C -0.550 4.550 23 S 2.544 3.456 24 O -1.014 7.014 25 O -1.003 7.003 26 N -1.088 6.088 27 H 0.084 0.916 28 H 0.065 0.935 29 H 0.057 0.943 30 H 0.151 0.849 31 H 0.132 0.868 32 H 0.424 0.576 33 H 0.171 0.829 34 H 0.195 0.805 35 H 0.019 0.981 36 H 0.055 0.945 37 H 0.272 0.728 38 H 0.158 0.842 39 H 0.111 0.889 40 H 0.171 0.829 41 H 0.172 0.828 42 H 0.433 0.567 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.071 -20.851 19.607 28.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.061 3.939 3 C -0.181 4.181 4 C 0.306 3.694 5 O -0.413 6.413 6 N -0.277 5.277 7 C 0.011 3.989 8 C -0.322 4.322 9 C -0.099 4.099 10 N -0.128 5.128 11 C 0.153 3.847 12 C -0.583 4.583 13 H 0.072 0.928 14 C -0.184 4.184 15 N -0.561 5.561 16 Si 0.798 3.202 17 H -0.197 1.197 18 H -0.198 1.198 19 H -0.196 1.196 20 N -0.179 5.179 21 C -0.153 4.153 22 C -0.685 4.685 23 S 2.645 3.355 24 O -1.004 7.004 25 O -0.993 6.993 26 N -0.855 5.855 27 H 0.103 0.897 28 H 0.084 0.916 29 H 0.076 0.924 30 H 0.169 0.831 31 H 0.150 0.850 32 H 0.262 0.738 33 H 0.188 0.812 34 H 0.212 0.788 35 H 0.037 0.963 36 H 0.073 0.927 37 H 0.081 0.919 38 H 0.176 0.824 39 H 0.130 0.870 40 H 0.189 0.811 41 H 0.190 0.810 42 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges 4.456 -20.850 18.640 28.320 hybrid contribution -0.642 1.046 -0.410 1.294 sum 3.813 -19.804 18.230 27.186 Atomic orbital electron populations 1.22511 0.93590 1.02813 1.04201 1.20596 0.96521 0.91998 0.84758 1.22452 1.04922 0.94905 0.95810 1.21611 0.79378 0.79575 0.88837 1.90527 1.37897 1.65270 1.47622 1.42802 1.51591 1.11818 1.21440 1.19546 0.97651 0.90716 0.90975 1.21736 1.10981 1.02397 0.97102 1.23161 0.98987 0.86007 1.01719 1.48810 1.36990 1.10792 1.16251 1.19309 0.97431 0.76602 0.91312 1.21416 1.45670 0.93079 0.98155 0.92849 1.25781 0.94896 1.00710 0.97015 1.70009 1.48178 1.21094 1.16818 0.85264 0.78280 0.78132 0.78515 1.19673 1.19840 1.19624 1.77243 1.23860 1.14650 1.02171 1.22723 0.93396 1.03153 0.96055 1.30625 1.06940 1.13568 1.17401 1.06904 0.73968 0.74108 0.80562 1.93552 1.52887 1.86924 1.67004 1.93587 1.67032 1.50860 1.87773 1.55148 1.67249 1.49726 1.13416 0.89716 0.91600 0.92441 0.83138 0.85027 0.73782 0.81216 0.78779 0.96260 0.92683 0.91854 0.82385 0.87014 0.81088 0.81022 0.72586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.30 8.13 71.98 0.59 -1.71 16 2 C 0.15 1.47 0.83 3.68 0.00 1.47 16 3 C -0.14 -1.09 4.70 29.85 0.14 -0.95 16 4 C 0.52 10.61 7.29 87.66 0.64 11.25 16 5 O -0.54 -14.39 8.92 -3.07 -0.03 -14.42 16 6 N -0.63 -15.75 5.45 -307.51 -1.68 -17.42 16 7 C 0.27 9.92 8.11 133.33 1.08 11.00 16 8 C -0.29 -10.85 9.61 22.11 0.21 -10.64 16 9 C 0.05 1.94 11.44 83.52 0.96 2.90 16 10 N -0.35 -16.16 3.67 -351.84 -1.29 -17.45 16 11 C 0.27 14.16 6.26 85.63 0.54 14.70 16 12 C -0.55 -30.57 9.24 25.60 0.24 -30.33 16 13 H 0.05 3.10 7.81 -2.91 -0.02 3.08 16 14 C 0.02 0.89 5.46 84.65 0.46 1.35 16 15 N -0.92 -52.22 13.29 21.45 0.28 -51.93 16 16 Si 0.97 43.10 29.54 68.60 2.03 45.12 16 17 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 18 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 19 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 20 N -0.35 -15.72 12.42 -54.45 -0.68 -16.39 16 21 C -0.11 -0.12 5.56 31.54 0.18 0.06 16 22 C -0.55 -1.02 7.65 72.86 0.56 -0.47 16 23 S 2.54 41.42 6.47 -56.49 -0.37 41.05 16 24 O -1.01 -25.88 18.14 -127.79 -2.32 -28.20 16 25 O -1.00 -24.38 18.15 -127.79 -2.32 -26.70 16 26 N -1.09 -18.15 5.67 -152.02 -0.86 -19.01 16 27 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 28 H 0.07 1.37 5.42 -2.39 -0.01 1.35 16 29 H 0.06 0.81 8.10 -2.39 -0.02 0.80 16 30 H 0.15 0.04 8.05 -2.38 -0.02 0.02 16 31 H 0.13 0.37 8.14 -2.39 -0.02 0.35 16 32 H 0.42 8.00 8.82 -92.71 -0.82 7.18 16 33 H 0.17 5.97 5.91 -2.91 -0.02 5.95 16 34 H 0.20 6.14 8.06 -2.91 -0.02 6.12 16 35 H 0.02 1.08 8.14 -2.38 -0.02 1.06 16 36 H 0.06 2.82 8.07 -2.39 -0.02 2.80 16 37 H 0.27 14.37 8.31 -92.71 -0.77 13.60 16 38 H 0.16 -1.03 7.71 -2.39 -0.02 -1.05 16 39 H 0.11 0.05 7.80 -2.39 -0.02 0.03 16 40 H 0.17 -0.46 8.14 -2.39 -0.02 -0.48 16 41 H 0.17 -0.52 8.14 -2.39 -0.02 -0.54 16 42 H 0.43 9.22 7.24 -93.00 -0.67 8.55 16 Total: -1.00 -88.16 359.32 -2.05 -90.21 By element: Atomic # 1 Polarization: 16.93 SS G_CDS: -0.41 Total: 16.52 kcal Atomic # 6 Polarization: -6.97 SS G_CDS: 5.58 Total: -1.39 kcal Atomic # 7 Polarization: -117.98 SS G_CDS: -4.22 Total: -122.20 kcal Atomic # 8 Polarization: -64.65 SS G_CDS: -4.66 Total: -69.32 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.12 kcal Atomic # 16 Polarization: 41.42 SS G_CDS: -0.37 Total: 41.05 kcal Total: -88.16 -2.05 -90.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361502736.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.713 kcal (2) G-P(sol) polarization free energy of solvation -88.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds