Wall clock time and date at job start Wed Apr 1 2020 01:45:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.52997 * 109.47253 * 2 1 4 4 H 1.09006 * 109.46987 * 305.37014 * 3 2 1 5 5 C 1.50700 * 109.47049 * 185.37444 * 3 2 1 6 6 H 1.08008 * 119.99774 * 244.79379 * 5 3 2 7 7 C 1.37873 * 120.00518 * 64.79491 * 5 3 2 8 8 N 1.31517 * 119.99924 * 7.04713 * 7 5 3 9 9 Si 1.86802 * 120.00337 * 187.04424 * 7 5 3 10 10 H 1.48496 * 109.47179 * 84.99112 * 9 7 5 11 11 H 1.48500 * 109.46886 * 204.99485 * 9 7 5 12 12 H 1.48499 * 109.47109 * 324.99032 * 9 7 5 13 13 N 1.46496 * 109.47359 * 65.37411 * 3 2 1 14 14 C 1.34780 * 119.99433 * 275.00011 * 13 3 2 15 15 O 1.21602 * 120.00650 * 0.02562 * 14 13 3 16 16 C 1.47435 * 119.99959 * 179.97438 * 14 13 3 17 17 C 1.41659 * 126.65783 * 0.02562 * 16 14 13 18 18 N 1.30621 * 108.11509 * 180.23216 * 17 16 14 19 19 N 1.39904 * 109.15564 * 0.46044 * 18 17 16 20 20 C 1.35001 * 107.38893 * 358.74383 * 19 18 17 21 21 S 1.76893 * 122.33926 * 182.00477 * 20 19 18 22 22 O 1.42098 * 107.10599 * 105.43221 * 21 20 19 23 23 O 1.42104 * 107.09967 * 240.11394 * 21 20 19 24 24 N 1.67518 * 102.63504 * 352.83174 * 21 20 19 25 25 C 1.46498 * 122.19401 * 217.82639 * 24 21 20 26 26 C 1.47501 * 115.61548 * 37.84740 * 24 21 20 27 27 C 1.46132 * 127.15008 * 178.10426 * 19 18 17 28 28 H 1.09009 * 109.47500 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47343 * 60.00053 * 1 2 3 30 30 H 1.09002 * 109.47600 * 299.99857 * 1 2 3 31 31 H 1.09000 * 109.47343 * 119.99947 * 2 1 3 32 32 H 1.09005 * 109.47344 * 239.99692 * 2 1 3 33 33 H 0.96998 * 120.00398 * 179.97438 * 8 7 5 34 34 H 0.96993 * 120.00305 * 94.99951 * 13 3 2 35 35 H 1.07996 * 125.94621 * 0.25414 * 17 16 14 36 36 H 1.09005 * 109.47246 * 89.99630 * 25 24 21 37 37 H 1.08998 * 109.47321 * 209.99813 * 25 24 21 38 38 H 1.09004 * 109.47173 * 330.00327 * 25 24 21 39 39 H 1.08997 * 109.19391 * 55.88383 * 26 24 21 40 40 H 1.09000 * 109.19521 * 175.15366 * 26 24 21 41 41 H 1.09003 * 108.83296 * 276.55357 * 27 19 18 42 42 H 1.08994 * 108.83487 * 34.89483 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6002 1.9833 -0.8380 5 6 3.5410 1.4445 -0.1331 6 1 4.1542 1.8170 0.6743 7 6 4.1317 0.9709 -1.2854 8 7 3.3878 0.6473 -2.3205 9 14 5.9886 0.7890 -1.3764 10 1 6.3862 -0.5220 -0.8033 11 1 6.4242 0.8621 -2.7942 12 1 6.6316 1.8823 -0.6041 13 7 1.6601 2.0947 1.2555 14 6 0.4435 2.6614 1.3793 15 8 -0.3390 2.6309 0.4490 16 6 0.0610 3.3174 2.6430 17 6 0.8559 3.4344 3.8096 18 7 0.1620 4.0759 4.7114 19 7 -1.0958 4.3896 4.1852 20 6 -1.1262 3.9353 2.9143 21 16 -2.5256 4.1712 1.8583 22 8 -2.1792 5.1857 0.9255 23 8 -2.9902 2.8809 1.4857 24 7 -3.6635 4.8263 2.8986 25 6 -5.0848 4.4808 2.8185 26 6 -3.1405 5.7743 3.9004 27 6 -2.1943 5.0685 4.8692 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 3.8033 0.3145 -3.1314 34 1 2.2841 2.1188 1.9977 35 1 1.8611 3.0589 3.9322 36 1 -5.2855 3.6182 3.4539 37 1 -5.6840 5.3270 3.1548 38 1 -5.3426 4.2400 1.7871 39 1 -2.6066 6.5762 3.3905 40 1 -3.9733 6.1992 4.4608 41 1 -2.7527 4.3356 5.4516 42 1 -1.7792 5.8127 5.5488 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362306068.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:45:19 Heat of formation + Delta-G solvation = -45.422559 kcal Electronic energy + Delta-G solvation = -29061.682942 eV Core-core repulsion = 24976.985873 eV Total energy + Delta-G solvation = -4084.697069 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.119 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.75534 -40.55789 -38.57773 -38.03670 -37.20610 -36.96442 -34.70388 -34.17696 -33.00416 -31.82629 -30.46441 -28.98612 -27.40122 -25.44284 -24.54780 -24.00401 -22.81990 -22.07200 -21.19956 -19.98535 -19.87372 -18.76496 -18.17512 -17.56689 -17.47442 -17.19976 -16.90910 -16.38759 -16.34038 -16.15450 -16.00137 -15.18681 -15.02023 -14.84950 -14.57164 -14.51565 -14.02649 -13.85961 -13.53022 -13.46906 -13.43029 -13.35688 -13.25757 -13.07926 -12.88997 -12.76595 -12.61754 -12.43319 -12.32805 -12.18561 -12.08551 -11.62758 -11.12650 -11.09024 -10.99221 -10.53012 -10.36785 -10.14543 -9.69167 -8.16588 -6.31407 -1.10580 -0.39958 0.79882 0.87997 1.46872 1.48209 1.56595 1.58044 2.17695 2.22620 2.31599 2.52009 3.04485 3.15084 3.31157 3.43584 3.63580 3.67212 3.88121 3.94270 4.25390 4.36467 4.43771 4.47037 4.53327 4.62018 4.69385 4.72884 4.83885 4.94032 5.01315 5.07019 5.23408 5.27237 5.41287 5.42537 5.47718 5.60361 5.74642 5.86689 6.01032 6.06401 6.75117 6.82592 7.29390 7.44840 8.92078 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.020513 B = 0.003426 C = 0.003154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.644029 B = 8170.426806 C = 8876.147152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.112 4.112 3 C 0.274 3.726 4 H 0.005 0.995 5 C -0.548 4.548 6 H 0.078 0.922 7 C 0.016 3.984 8 N -0.917 5.917 9 Si 0.972 3.028 10 H -0.269 1.269 11 H -0.290 1.290 12 H -0.263 1.263 13 N -0.685 5.685 14 C 0.557 3.443 15 O -0.583 6.583 16 C -0.189 4.189 17 C 0.075 3.925 18 N -0.255 5.255 19 N -0.300 5.300 20 C -0.431 4.431 21 S 2.700 3.300 22 O -0.967 6.967 23 O -0.955 6.955 24 N -0.995 5.995 25 C 0.090 3.910 26 C 0.089 3.911 27 C 0.075 3.925 28 H 0.049 0.951 29 H 0.025 0.975 30 H 0.041 0.959 31 H 0.052 0.948 32 H 0.059 0.941 33 H 0.265 0.735 34 H 0.408 0.592 35 H 0.234 0.766 36 H 0.073 0.927 37 H 0.127 0.873 38 H 0.058 0.942 39 H 0.090 0.910 40 H 0.186 0.814 41 H 0.130 0.870 42 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.153 11.159 21.232 28.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.151 4.151 3 C 0.171 3.829 4 H 0.023 0.977 5 C -0.586 4.586 6 H 0.096 0.904 7 C -0.184 4.184 8 N -0.555 5.555 9 Si 0.796 3.204 10 H -0.194 1.194 11 H -0.216 1.216 12 H -0.187 1.187 13 N -0.333 5.333 14 C 0.343 3.657 15 O -0.466 6.466 16 C -0.206 4.206 17 C -0.110 4.110 18 N -0.077 5.077 19 N -0.084 5.084 20 C -0.644 4.644 21 S 2.786 3.214 22 O -0.955 6.955 23 O -0.944 6.944 24 N -0.841 5.841 25 C -0.053 4.053 26 C -0.036 4.036 27 C -0.044 4.044 28 H 0.068 0.932 29 H 0.044 0.956 30 H 0.060 0.940 31 H 0.071 0.929 32 H 0.078 0.922 33 H 0.074 0.926 34 H 0.244 0.756 35 H 0.250 0.750 36 H 0.091 0.909 37 H 0.145 0.855 38 H 0.077 0.923 39 H 0.108 0.892 40 H 0.203 0.797 41 H 0.147 0.853 42 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -15.904 11.397 20.751 28.520 hybrid contribution 1.741 -0.733 -0.792 2.049 sum -14.162 10.664 19.959 26.696 Atomic orbital electron populations 1.21726 0.97150 0.99394 1.00394 1.21712 0.93548 0.98884 1.00926 1.18532 0.94341 0.89229 0.80811 0.97695 1.21520 0.90828 1.43472 1.02823 0.90410 1.25807 1.03384 0.94652 0.94605 1.70135 1.37547 1.43897 1.03903 0.85364 0.78916 0.79065 0.77010 1.19433 1.21577 1.18703 1.45958 1.14137 1.55057 1.18113 1.17767 0.82979 0.78782 0.86136 1.90802 1.52065 1.61835 1.41852 1.20070 0.95300 1.07801 0.97455 1.24919 1.01334 0.96499 0.88291 1.76926 0.90806 1.17417 1.22549 1.48926 1.12265 1.41098 1.06087 1.33382 1.19127 1.09925 1.01998 1.02275 0.72653 0.73600 0.72917 1.93613 1.83554 1.59810 1.58531 1.93591 1.78890 1.40763 1.81135 1.57553 1.18754 1.58315 1.49462 1.21919 0.76530 1.04009 1.02848 1.22452 1.00250 0.90297 0.90579 1.23115 0.84332 1.00323 0.96605 0.93191 0.95592 0.94013 0.92887 0.92221 0.92608 0.75648 0.74973 0.90863 0.85455 0.92287 0.89206 0.79679 0.85254 0.82399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.34 8.52 71.98 0.61 -5.73 16 2 C -0.11 -5.68 5.49 30.59 0.17 -5.51 16 3 C 0.27 14.60 2.11 44.25 0.09 14.69 16 4 H 0.01 0.33 7.55 -2.38 -0.02 0.31 16 5 C -0.55 -29.33 8.67 25.60 0.22 -29.11 16 6 H 0.08 3.82 7.73 -2.91 -0.02 3.79 16 7 C 0.02 0.87 5.19 84.65 0.44 1.31 16 8 N -0.92 -54.08 12.00 21.45 0.26 -53.82 16 9 Si 0.97 42.51 29.54 68.60 2.03 44.53 16 10 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 11 H -0.29 -12.76 7.11 99.48 0.71 -12.05 16 12 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 13 N -0.68 -30.07 5.02 -449.37 -2.26 -32.33 16 14 C 0.56 25.31 6.40 86.67 0.55 25.87 16 15 O -0.58 -31.43 12.36 2.20 0.03 -31.40 16 16 C -0.19 -6.81 6.11 -20.40 -0.12 -6.93 16 17 C 0.08 2.04 11.52 85.72 0.99 3.02 16 18 N -0.25 -6.27 12.53 -55.94 -0.70 -6.97 16 19 N -0.30 -6.80 4.01 -344.82 -1.38 -8.18 16 20 C -0.43 -13.81 6.89 83.81 0.58 -13.23 16 21 S 2.70 89.08 4.75 -56.49 -0.27 88.81 16 22 O -0.97 -38.85 18.06 -128.10 -2.31 -41.16 16 23 O -0.96 -38.55 17.00 -123.84 -2.10 -40.66 16 24 N -1.00 -16.46 3.50 -537.23 -1.88 -18.34 16 25 C 0.09 0.91 10.62 127.77 1.36 2.27 16 26 C 0.09 0.63 6.36 86.09 0.55 1.17 16 27 C 0.08 0.66 7.13 86.35 0.62 1.27 16 28 H 0.05 2.14 8.14 -2.38 -0.02 2.12 16 29 H 0.02 1.37 7.86 -2.39 -0.02 1.35 16 30 H 0.04 2.03 5.64 -2.39 -0.01 2.02 16 31 H 0.05 2.45 8.14 -2.39 -0.02 2.43 16 32 H 0.06 3.33 6.64 -2.38 -0.02 3.31 16 33 H 0.26 14.81 8.31 -92.71 -0.77 14.04 16 34 H 0.41 14.45 7.51 -92.71 -0.70 13.75 16 35 H 0.23 4.44 7.53 -2.91 -0.02 4.42 16 36 H 0.07 0.60 8.14 -2.38 -0.02 0.58 16 37 H 0.13 0.13 8.02 -2.39 -0.02 0.11 16 38 H 0.06 0.79 8.11 -2.38 -0.02 0.77 16 39 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 40 H 0.19 -0.83 7.92 -2.39 -0.02 -0.85 16 41 H 0.13 0.58 8.14 -2.39 -0.02 0.56 16 42 H 0.16 0.34 8.14 -2.39 -0.02 0.32 16 Total: -1.00 -91.36 356.78 -2.17 -93.53 By element: Atomic # 1 Polarization: 16.53 SS G_CDS: 0.37 Total: 16.90 kcal Atomic # 6 Polarization: -16.96 SS G_CDS: 6.05 Total: -10.91 kcal Atomic # 7 Polarization: -113.69 SS G_CDS: -5.96 Total: -119.65 kcal Atomic # 8 Polarization: -108.83 SS G_CDS: -4.39 Total: -113.22 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 2.03 Total: 44.53 kcal Atomic # 16 Polarization: 89.08 SS G_CDS: -0.27 Total: 88.81 kcal Total: -91.36 -2.17 -93.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362306068.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.108 kcal (2) G-P(sol) polarization free energy of solvation -91.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds