Wall clock time and date at job start Wed Apr 1 2020 01:45:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52997 * 109.47188 * 2 1 4 4 H 1.09005 * 109.46824 * 55.00298 * 3 2 1 5 5 C 1.50701 * 109.47167 * 174.99945 * 3 2 1 6 6 H 1.08004 * 120.00073 * 120.00323 * 5 3 2 7 7 C 1.37881 * 119.99981 * 300.00183 * 5 3 2 8 8 N 1.31517 * 119.99894 * 179.97438 * 7 5 3 9 9 Si 1.86804 * 120.00102 * 0.02562 * 7 5 3 10 10 H 1.48499 * 109.46875 * 89.99757 * 9 7 5 11 11 H 1.48490 * 109.47005 * 209.99705 * 9 7 5 12 12 H 1.48499 * 109.46905 * 329.99837 * 9 7 5 13 13 N 1.46493 * 109.47546 * 294.99984 * 3 2 1 14 14 C 1.34782 * 120.00032 * 84.99797 * 13 3 2 15 15 O 1.21605 * 119.99805 * 0.02562 * 14 13 3 16 16 C 1.47426 * 120.00351 * 180.02562 * 14 13 3 17 17 C 1.41654 * 126.66178 * 359.97438 * 16 14 13 18 18 N 1.30619 * 108.11415 * 180.16862 * 17 16 14 19 19 N 1.39903 * 109.15754 * 0.46769 * 18 17 16 20 20 C 1.34978 * 107.39608 * 359.07744 * 19 18 17 21 21 S 1.76899 * 122.33874 * 181.05645 * 20 19 18 22 22 O 1.42092 * 107.10548 * 105.69610 * 21 20 19 23 23 O 1.42103 * 107.10106 * 240.50273 * 21 20 19 24 24 N 1.67523 * 102.61527 * 353.09636 * 21 20 19 25 25 C 1.46496 * 122.21308 * 217.85063 * 24 21 20 26 26 C 1.47525 * 115.56945 * 37.85096 * 24 21 20 27 27 C 1.46137 * 127.11484 * 178.35338 * 19 18 17 28 28 H 1.09000 * 109.47406 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47599 * 299.99623 * 1 2 3 30 30 H 1.09002 * 109.47236 * 59.99691 * 1 2 3 31 31 H 1.09000 * 109.46950 * 240.00008 * 2 1 3 32 32 H 1.09001 * 109.47027 * 120.00815 * 2 1 3 33 33 H 0.96996 * 119.99772 * 180.02562 * 8 7 5 34 34 H 0.97000 * 120.00224 * 265.00147 * 13 3 2 35 35 H 1.07997 * 125.93841 * 0.12530 * 17 16 14 36 36 H 1.09003 * 109.47100 * 90.00360 * 25 24 21 37 37 H 1.08996 * 109.47214 * 210.00431 * 25 24 21 38 38 H 1.09004 * 109.47166 * 330.00050 * 25 24 21 39 39 H 1.08998 * 109.19308 * 175.01597 * 26 24 21 40 40 H 1.09004 * 109.20147 * 55.74386 * 26 24 21 41 41 H 1.08998 * 108.83018 * 277.01835 * 27 19 18 42 42 H 1.08995 * 108.82732 * 35.45049 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8419 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1432 0.8783 1.2280 8 7 5.4540 0.8794 1.3358 9 14 3.0963 0.1087 2.5701 10 1 2.8755 -1.3274 2.2632 11 1 3.7936 0.2345 3.8751 12 1 1.7876 0.8071 2.6387 13 7 1.6525 2.0975 -1.2517 14 6 0.4351 2.6645 -1.3669 15 8 -0.3414 2.6326 -0.4315 16 6 0.0449 3.3232 -2.6267 17 6 0.8326 3.4428 -3.7979 18 7 0.1363 4.0937 -4.6910 19 7 -1.1081 4.4299 -4.1472 20 6 -1.1461 3.9370 -2.8912 21 16 -2.5630 4.1152 -1.8472 22 8 -3.2021 2.8474 -1.7901 23 8 -2.1482 4.8452 -0.7007 24 7 -3.5531 5.1263 -2.7435 25 6 -4.3689 6.1724 -2.1219 26 6 -3.5492 4.8937 -4.2003 27 6 -2.1772 5.1880 -4.7936 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.8932 -0.5138 -0.8900 32 1 1.8933 -0.5140 0.8899 33 1 5.8770 0.4810 2.1124 34 1 2.2719 2.1232 -1.9977 35 1 1.8349 3.0626 -3.9293 36 1 -3.7961 7.0984 -2.0721 37 1 -5.2683 6.3330 -2.7163 38 1 -4.6494 5.8640 -1.1147 39 1 -4.2889 5.5428 -4.6689 40 1 -3.8096 3.8538 -4.3980 41 1 -1.9684 6.2524 -4.6861 42 1 -2.1934 4.9385 -5.8545 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362306100.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:45:24 Heat of formation + Delta-G solvation = -3.516903 kcal Electronic energy + Delta-G solvation = -29166.720227 eV Core-core repulsion = 25083.840324 eV Total energy + Delta-G solvation = -4082.879903 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.119 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.71073 -39.10767 -37.44280 -37.27358 -35.96306 -35.35765 -33.77245 -32.39678 -31.64882 -30.69656 -29.71048 -27.59615 -26.68316 -24.19623 -23.15669 -22.48320 -21.80660 -20.82825 -19.66073 -18.95225 -18.79058 -17.58428 -16.98330 -16.51033 -16.12034 -16.04835 -15.69849 -15.48462 -15.27819 -14.76471 -14.42261 -14.10456 -14.04214 -13.75640 -13.47090 -13.39556 -12.95198 -12.91196 -12.40228 -12.27686 -12.19672 -12.11361 -11.89576 -11.87528 -11.73827 -11.69250 -11.25223 -11.04574 -10.86818 -10.58164 -10.12676 -9.89116 -9.70201 -9.64344 -9.31709 -9.20469 -9.06693 -8.73566 -8.10630 -6.18808 -4.21553 -0.02620 0.75811 1.63844 2.00008 2.42516 3.21512 3.27555 3.39638 3.46096 3.57173 3.66313 3.92527 3.92782 4.20046 4.35107 4.46722 4.55383 4.72830 4.79829 4.83097 4.93391 4.97785 5.08205 5.15192 5.30776 5.33496 5.48325 5.86969 6.03097 6.06518 6.09487 6.22970 6.24351 6.71153 6.75924 6.87628 7.01300 7.04986 7.23159 7.31500 7.50998 8.10065 8.47837 8.72355 8.84217 9.41596 10.93024 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.020134 B = 0.003666 C = 0.003352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.317144 B = 7635.014603 C = 8351.852577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.139 4.139 3 C 0.241 3.759 4 H 0.055 0.945 5 C -0.535 4.535 6 H 0.081 0.919 7 C 0.080 3.920 8 N -0.892 5.892 9 Si 0.881 3.119 10 H -0.275 1.275 11 H -0.294 1.294 12 H -0.258 1.258 13 N -0.683 5.683 14 C 0.565 3.435 15 O -0.542 6.542 16 C -0.149 4.149 17 C 0.071 3.929 18 N -0.255 5.255 19 N -0.320 5.320 20 C -0.424 4.424 21 S 2.702 3.298 22 O -0.920 6.920 23 O -0.909 6.909 24 N -1.011 6.011 25 C 0.104 3.896 26 C 0.096 3.904 27 C 0.096 3.904 28 H 0.034 0.966 29 H 0.055 0.945 30 H 0.052 0.948 31 H 0.060 0.940 32 H 0.056 0.944 33 H 0.267 0.733 34 H 0.396 0.604 35 H 0.207 0.793 36 H 0.061 0.939 37 H 0.080 0.920 38 H 0.073 0.927 39 H 0.126 0.874 40 H 0.091 0.909 41 H 0.101 0.899 42 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.530 10.470 -15.191 26.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.177 4.177 3 C 0.138 3.862 4 H 0.073 0.927 5 C -0.573 4.573 6 H 0.099 0.901 7 C -0.124 4.124 8 N -0.528 5.528 9 Si 0.710 3.290 10 H -0.202 1.202 11 H -0.221 1.221 12 H -0.182 1.182 13 N -0.330 5.330 14 C 0.349 3.651 15 O -0.421 6.421 16 C -0.166 4.166 17 C -0.116 4.116 18 N -0.077 5.077 19 N -0.105 5.105 20 C -0.634 4.634 21 S 2.785 3.215 22 O -0.908 6.908 23 O -0.898 6.898 24 N -0.852 5.852 25 C -0.041 4.041 26 C -0.031 4.031 27 C -0.026 4.026 28 H 0.053 0.947 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.230 0.770 35 H 0.223 0.777 36 H 0.080 0.920 37 H 0.098 0.902 38 H 0.092 0.908 39 H 0.144 0.856 40 H 0.109 0.891 41 H 0.119 0.881 42 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -20.180 10.583 -14.793 27.167 hybrid contribution 0.579 -0.640 0.341 0.928 sum -19.601 9.943 -14.452 26.304 Atomic orbital electron populations 1.21915 0.96769 0.99352 1.02514 1.22296 0.94480 0.99675 1.01290 1.19283 0.95882 0.88675 0.82406 0.92720 1.21012 0.88364 1.39970 1.07992 0.90057 1.24811 0.94869 0.95079 0.97627 1.69864 1.08683 1.44437 1.29843 0.86928 0.81136 0.80018 0.80881 1.20164 1.22142 1.18222 1.45926 1.13866 1.54865 1.18306 1.17238 0.83489 0.79131 0.85235 1.90819 1.51625 1.60271 1.39421 1.20254 0.92960 1.05753 0.97677 1.24566 1.00333 0.97019 0.89714 1.76965 0.91318 1.17100 1.22305 1.48285 1.13195 1.40729 1.08252 1.33467 1.19504 1.09531 1.00873 1.02685 0.72426 0.74055 0.72306 1.93670 1.72465 1.39955 1.84748 1.93668 1.80760 1.71838 1.43552 1.57922 1.60534 1.51104 1.15682 1.21513 0.94586 0.89842 0.98127 1.21877 0.95485 1.04669 0.81024 1.22279 0.83966 0.96720 0.99586 0.94719 0.92598 0.92919 0.92121 0.92570 0.92268 0.76989 0.77695 0.92018 0.90163 0.90805 0.85627 0.89066 0.88053 0.85997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.16 8.51 37.15 0.32 -2.85 16 2 C -0.14 -3.15 5.11 -26.74 -0.14 -3.29 16 3 C 0.24 5.80 1.83 -69.09 -0.13 5.67 16 4 H 0.06 1.46 6.63 -51.93 -0.34 1.11 16 5 C -0.54 -14.43 9.31 -34.44 -0.32 -14.76 16 6 H 0.08 2.28 7.98 -52.48 -0.42 1.86 16 7 C 0.08 2.25 5.45 -17.82 -0.10 2.15 16 8 N -0.89 -26.41 13.96 55.43 0.77 -25.63 16 9 Si 0.88 21.95 24.41 -169.99 -4.15 17.80 16 10 H -0.27 -6.62 6.83 56.52 0.39 -6.23 16 11 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 12 H -0.26 -6.40 6.53 56.52 0.37 -6.03 16 13 N -0.68 -13.90 5.01 -56.01 -0.28 -14.18 16 14 C 0.57 11.61 6.38 -12.52 -0.08 11.53 16 15 O -0.54 -12.78 12.39 -0.07 0.00 -12.78 16 16 C -0.15 -2.54 6.11 -105.46 -0.64 -3.19 16 17 C 0.07 0.98 11.52 -16.76 -0.19 0.78 16 18 N -0.26 -3.38 12.53 30.97 0.39 -2.99 16 19 N -0.32 -3.87 4.01 -60.53 -0.24 -4.11 16 20 C -0.42 -6.53 6.89 -16.77 -0.12 -6.64 16 21 S 2.70 41.19 4.74 -107.50 -0.51 40.68 16 22 O -0.92 -16.38 18.06 -57.05 -1.03 -17.42 16 23 O -0.91 -16.77 17.04 -61.16 -1.04 -17.81 16 24 N -1.01 -8.94 3.50 -121.35 -0.42 -9.36 16 25 C 0.10 0.62 10.62 59.84 0.64 1.26 16 26 C 0.10 0.50 6.34 -3.82 -0.02 0.48 16 27 C 0.10 0.60 7.12 -4.57 -0.03 0.57 16 28 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.05 1.25 7.84 -51.93 -0.41 0.84 16 30 H 0.05 1.12 5.65 -51.93 -0.29 0.83 16 31 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 32 H 0.06 1.33 3.21 -51.93 -0.17 1.16 16 33 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 34 H 0.40 6.83 7.53 -40.82 -0.31 6.52 16 35 H 0.21 2.12 7.53 -52.49 -0.40 1.72 16 36 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 37 H 0.08 0.21 8.02 -51.93 -0.42 -0.20 16 38 H 0.07 0.48 8.11 -51.93 -0.42 0.06 16 39 H 0.13 0.11 7.92 -51.93 -0.41 -0.30 16 40 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.12 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 348.89 15.07 5.26 5.26 Total: -1.00 -38.78 348.89 -7.38 -46.16 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: -5.30 Total: 2.67 kcal Atomic # 6 Polarization: -7.46 SS G_CDS: -0.82 Total: -8.28 kcal Atomic # 7 Polarization: -56.50 SS G_CDS: 0.21 Total: -56.29 kcal Atomic # 8 Polarization: -45.93 SS G_CDS: -2.07 Total: -48.01 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -4.15 Total: 17.80 kcal Atomic # 16 Polarization: 41.19 SS G_CDS: -0.51 Total: 40.68 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -38.78 -7.38 -46.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362306100.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.648 kcal (2) G-P(sol) polarization free energy of solvation -38.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds