Wall clock time and date at job start Wed Apr 1 2020 01:45:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.09006 * 109.47194 * 55.00274 * 3 2 1 5 5 C 1.50700 * 109.47526 * 174.99949 * 3 2 1 6 6 H 1.07998 * 119.99966 * 119.99904 * 5 3 2 7 7 C 1.37878 * 120.00064 * 300.00576 * 5 3 2 8 8 N 1.31507 * 119.99923 * 180.02562 * 7 5 3 9 9 Si 1.86797 * 119.99701 * 359.97438 * 7 5 3 10 10 H 1.48506 * 109.46840 * 90.00760 * 9 7 5 11 11 H 1.48504 * 109.46912 * 209.99808 * 9 7 5 12 12 H 1.48497 * 109.47580 * 330.00471 * 9 7 5 13 13 N 1.46501 * 109.47135 * 295.00335 * 3 2 1 14 14 C 1.34777 * 120.00027 * 84.99801 * 13 3 2 15 15 O 1.21578 * 119.99994 * 359.97438 * 14 13 3 16 16 C 1.47718 * 120.00013 * 179.97438 * 14 13 3 17 17 C 1.41814 * 126.47412 * 179.97438 * 16 14 13 18 18 C 1.33796 * 104.98158 * 180.20854 * 17 16 14 19 19 N 1.35883 * 108.68549 * 359.08564 * 18 17 16 20 20 N 1.28709 * 108.73664 * 1.06548 * 19 18 17 21 21 C 1.46418 * 124.94290 * 182.30699 * 19 18 17 22 22 C 1.52295 * 112.69731 * 334.12803 * 21 19 18 23 23 N 1.47485 * 110.92290 * 56.02534 * 22 21 19 24 24 C 1.46494 * 122.20985 * 115.25677 * 23 22 21 25 25 S 1.67507 * 115.58162 * 295.22798 * 23 22 21 26 26 O 1.42104 * 107.09801 * 285.20229 * 25 23 22 27 27 O 1.42099 * 107.09551 * 150.41405 * 25 23 22 28 28 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 29 29 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 31 31 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 32 32 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 33 33 H 0.97005 * 119.99936 * 179.97438 * 8 7 5 34 34 H 0.96998 * 120.00208 * 264.99507 * 13 3 2 35 35 H 1.08007 * 127.50817 * 0.23032 * 17 16 14 36 36 H 1.08999 * 108.83715 * 94.95340 * 21 19 18 37 37 H 1.08996 * 108.83830 * 213.29648 * 21 19 18 38 38 H 1.09005 * 109.18337 * 176.39777 * 22 21 19 39 39 H 1.09003 * 109.18600 * 295.69580 * 22 21 19 40 40 H 1.09000 * 109.47467 * 89.99408 * 24 23 22 41 41 H 1.09006 * 109.47488 * 209.99679 * 24 23 22 42 42 H 1.09002 * 109.46962 * 329.99494 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8783 1.2279 8 7 5.4539 0.8804 1.3362 9 14 3.0964 0.1099 2.5706 10 1 2.8747 -1.3262 2.2643 11 1 3.7942 0.2357 3.8754 12 1 1.7881 0.8091 2.6394 13 7 1.6524 2.0975 -1.2518 14 6 0.4351 2.6644 -1.3669 15 8 -0.3415 2.6318 -0.4320 16 6 0.0445 3.3254 -2.6289 17 6 -1.1938 3.9614 -2.8992 18 6 -1.0883 4.4031 -4.1577 19 7 0.1442 4.0808 -4.6303 20 7 0.7835 3.4404 -3.7150 21 6 0.6541 4.4381 -5.9555 22 6 -0.4566 4.6395 -6.9778 23 7 -1.4207 5.6550 -6.5149 24 6 -1.6074 6.9297 -7.2122 25 16 -2.2888 5.2542 -5.1395 26 8 -3.2662 4.2979 -5.5262 27 8 -2.5922 6.4693 -4.4681 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 5.8770 0.4826 2.1132 34 1 2.2718 2.1232 -1.9978 35 1 -2.0381 4.0667 -2.2339 36 1 1.2292 5.3605 -5.8744 37 1 1.3140 3.6439 -6.3046 38 1 -0.0196 4.9645 -7.9221 39 1 -0.9781 3.6947 -7.1310 40 1 -2.3835 6.8194 -7.9696 41 1 -1.9051 7.6956 -6.4959 42 1 -0.6726 7.2228 -7.6899 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362823347.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:45:15 Heat of formation + Delta-G solvation = -37.218930 kcal Electronic energy + Delta-G solvation = -28231.300803 eV Core-core repulsion = 24146.959471 eV Total energy + Delta-G solvation = -4084.341333 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.119 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.99375 -40.71454 -38.59767 -38.07174 -37.24448 -37.16859 -34.62747 -34.36965 -33.31377 -32.47337 -30.63422 -29.39732 -27.32225 -25.78236 -24.54852 -23.92204 -22.99110 -22.28115 -21.39306 -20.20933 -19.84643 -18.78031 -18.44043 -17.83367 -17.63806 -17.59582 -17.01351 -16.59761 -16.39511 -16.26949 -15.83769 -15.51816 -15.13885 -14.94261 -14.71705 -14.55735 -14.15665 -13.88402 -13.76814 -13.68546 -13.61811 -13.45759 -13.31144 -13.13074 -12.96067 -12.79033 -12.64879 -12.43888 -12.41134 -12.26130 -11.87156 -11.47359 -11.27758 -11.11183 -11.05195 -10.87156 -10.46050 -10.21825 -9.85559 -8.39378 -6.45657 -1.02689 0.07099 0.46276 0.86529 1.27337 1.35522 1.45747 1.54195 2.12968 2.23224 2.25499 2.29813 2.86786 2.96137 3.33969 3.42248 3.60568 3.87314 3.90363 3.99403 4.18522 4.21228 4.29732 4.37112 4.43567 4.48937 4.63447 4.77758 4.80091 4.89062 4.91823 4.97949 5.03877 5.08630 5.19457 5.27064 5.35275 5.41096 5.48637 5.55494 6.08110 6.32370 6.54679 6.77283 7.12680 7.28533 8.75873 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.025087 B = 0.002765 C = 0.002622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.843564 B =10123.588133 C =10676.949577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.137 4.137 3 C 0.249 3.751 4 H 0.029 0.971 5 C -0.536 4.536 6 H 0.054 0.946 7 C 0.031 3.969 8 N -0.933 5.933 9 Si 0.936 3.064 10 H -0.257 1.257 11 H -0.292 1.292 12 H -0.258 1.258 13 N -0.684 5.684 14 C 0.592 3.408 15 O -0.564 6.564 16 C -0.045 4.045 17 C -0.078 4.078 18 C -0.547 4.547 19 N -0.224 5.224 20 N -0.216 5.216 21 C 0.063 3.937 22 C 0.099 3.901 23 N -0.992 5.992 24 C 0.084 3.916 25 S 2.726 3.274 26 O -0.958 6.958 27 O -0.961 6.961 28 H 0.041 0.959 29 H 0.062 0.938 30 H 0.049 0.951 31 H 0.049 0.951 32 H 0.068 0.932 33 H 0.271 0.729 34 H 0.407 0.593 35 H 0.181 0.819 36 H 0.132 0.868 37 H 0.155 0.845 38 H 0.181 0.819 39 H 0.096 0.904 40 H 0.076 0.924 41 H 0.071 0.929 42 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.899 10.358 -24.904 29.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.175 4.175 3 C 0.144 3.856 4 H 0.047 0.953 5 C -0.574 4.574 6 H 0.072 0.928 7 C -0.169 4.169 8 N -0.571 5.571 9 Si 0.763 3.237 10 H -0.183 1.183 11 H -0.219 1.219 12 H -0.183 1.183 13 N -0.332 5.332 14 C 0.376 3.624 15 O -0.443 6.443 16 C -0.202 4.202 17 C -0.108 4.108 18 C -0.750 4.750 19 N -0.018 5.018 20 N -0.056 5.056 21 C -0.054 4.054 22 C -0.026 4.026 23 N -0.836 5.836 24 C -0.059 4.059 25 S 2.810 3.190 26 O -0.947 6.947 27 O -0.950 6.950 28 H 0.060 0.940 29 H 0.081 0.919 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.087 0.913 33 H 0.080 0.920 34 H 0.243 0.757 35 H 0.199 0.801 36 H 0.150 0.850 37 H 0.173 0.827 38 H 0.199 0.801 39 H 0.114 0.886 40 H 0.095 0.905 41 H 0.090 0.910 42 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -13.076 10.241 -24.494 29.594 hybrid contribution 0.336 -0.522 1.482 1.607 sum -12.740 9.719 -23.012 28.042 Atomic orbital electron populations 1.21787 0.95183 1.00828 1.01586 1.22211 0.95882 0.98162 1.01295 1.18924 0.93580 0.89872 0.83180 0.95349 1.21225 0.90069 1.38926 1.07146 0.92766 1.25539 0.95803 0.95729 0.99779 1.69970 1.10289 1.45979 1.30883 0.86037 0.79386 0.80082 0.78211 1.18255 1.21918 1.18259 1.45889 1.14876 1.54971 1.17484 1.17061 0.82209 0.78031 0.85051 1.90751 1.52474 1.61320 1.39741 1.22210 0.95073 1.08543 0.94401 1.21539 0.98833 0.96281 0.94130 1.33390 1.06842 1.24584 1.10201 1.46231 1.07355 1.35100 1.13137 1.73316 1.23986 1.10486 0.97839 1.23320 1.00088 1.07132 0.74909 1.22214 0.89011 0.92463 0.98955 1.57337 1.55688 1.27600 1.43000 1.21963 1.05448 0.81167 0.97324 1.01588 0.72036 0.72465 0.72872 1.93655 1.55646 1.63878 1.81540 1.93608 1.82922 1.44233 1.74275 0.93968 0.91922 0.93237 0.93266 0.91318 0.91965 0.75722 0.80135 0.85027 0.82727 0.80144 0.88605 0.90507 0.90991 0.86707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.47 8.51 71.98 0.61 -4.85 16 2 C -0.14 -6.08 5.11 30.59 0.16 -5.93 16 3 C 0.25 12.18 1.83 44.24 0.08 12.26 16 4 H 0.03 1.54 6.63 -2.38 -0.02 1.52 16 5 C -0.54 -29.93 9.31 25.60 0.24 -29.69 16 6 H 0.05 3.24 7.98 -2.91 -0.02 3.22 16 7 C 0.03 1.80 5.45 84.66 0.46 2.26 16 8 N -0.93 -56.41 13.96 21.45 0.30 -56.12 16 9 Si 0.94 45.07 24.41 68.60 1.67 46.75 16 10 H -0.26 -11.57 6.83 99.48 0.68 -10.89 16 11 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 12 H -0.26 -12.32 6.53 99.48 0.65 -11.67 16 13 N -0.68 -29.38 5.02 -449.08 -2.25 -31.63 16 14 C 0.59 24.62 6.39 86.75 0.55 25.17 16 15 O -0.56 -26.11 14.06 -3.96 -0.06 -26.16 16 16 C -0.04 -1.55 7.14 42.53 0.30 -1.25 16 17 C -0.08 -2.39 10.79 22.14 0.24 -2.15 16 18 C -0.55 -13.24 6.82 83.06 0.57 -12.67 16 19 N -0.22 -4.71 3.74 -346.42 -1.29 -6.00 16 20 N -0.22 -6.28 11.70 -47.94 -0.56 -6.84 16 21 C 0.06 0.44 7.02 86.16 0.60 1.05 16 22 C 0.10 0.22 6.32 85.96 0.54 0.76 16 23 N -0.99 -8.25 3.50 -538.01 -1.88 -10.13 16 24 C 0.08 0.26 10.87 127.77 1.39 1.65 16 25 S 2.73 52.52 5.89 -56.49 -0.33 52.19 16 26 O -0.96 -23.50 18.06 -128.12 -2.31 -25.82 16 27 O -0.96 -23.60 17.13 -128.12 -2.19 -25.80 16 28 H 0.04 1.77 7.84 -2.39 -0.02 1.76 16 29 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 30 H 0.05 1.99 5.64 -2.38 -0.01 1.98 16 31 H 0.05 2.25 3.22 -2.39 -0.01 2.24 16 32 H 0.07 2.89 8.14 -2.39 -0.02 2.87 16 33 H 0.27 15.34 8.31 -92.70 -0.77 14.57 16 34 H 0.41 16.24 8.26 -92.71 -0.77 15.48 16 35 H 0.18 5.08 8.06 -2.91 -0.02 5.05 16 36 H 0.13 0.44 8.14 -2.39 -0.02 0.42 16 37 H 0.16 0.39 8.14 -2.39 -0.02 0.37 16 38 H 0.18 -1.37 7.98 -2.38 -0.02 -1.39 16 39 H 0.10 0.28 8.14 -2.39 -0.02 0.26 16 40 H 0.08 0.05 8.14 -2.39 -0.02 0.03 16 41 H 0.07 0.44 7.38 -2.38 -0.02 0.42 16 42 H 0.11 -0.39 8.09 -2.39 -0.02 -0.41 16 Total: -1.00 -85.27 351.76 -2.94 -88.21 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: 0.22 Total: 14.76 kcal Atomic # 6 Polarization: -19.15 SS G_CDS: 5.75 Total: -13.40 kcal Atomic # 7 Polarization: -105.03 SS G_CDS: -5.69 Total: -110.72 kcal Atomic # 8 Polarization: -73.22 SS G_CDS: -4.56 Total: -77.78 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 1.67 Total: 46.75 kcal Atomic # 16 Polarization: 52.52 SS G_CDS: -0.33 Total: 52.19 kcal Total: -85.27 -2.94 -88.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362823347.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.986 kcal (2) G-P(sol) polarization free energy of solvation -85.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds