Wall clock time and date at job start Wed Apr 1 2020 00:41:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 120.00294 * 2 1 4 4 H 1.48496 * 109.47378 * 270.00348 * 3 2 1 5 5 H 1.48500 * 109.46996 * 29.99937 * 3 2 1 6 6 H 1.48498 * 109.47361 * 150.00110 * 3 2 1 7 7 C 1.37879 * 120.00044 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00272 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99841 * 359.97438 * 7 2 1 10 10 H 1.08997 * 109.47569 * 59.99737 * 9 7 2 11 11 N 1.46502 * 109.47450 * 180.02562 * 9 7 2 12 12 C 1.34774 * 120.00345 * 205.00407 * 11 9 7 13 13 O 1.21585 * 119.99851 * 359.97438 * 12 11 9 14 14 N 1.34779 * 120.00122 * 179.97438 * 12 11 9 15 15 C 1.46497 * 120.00108 * 179.97438 * 14 12 11 16 16 H 1.09005 * 109.46841 * 324.99774 * 15 14 12 17 17 C 1.53002 * 109.47108 * 84.99768 * 15 14 12 18 18 O 1.42902 * 109.46712 * 65.00079 * 17 15 14 19 19 C 1.52995 * 109.47351 * 205.00137 * 15 14 12 20 20 C 1.52998 * 109.47159 * 64.99851 * 19 15 14 21 21 O 1.43757 * 109.63534 * 294.36496 * 20 19 15 22 22 C 1.44778 * 104.81805 * 215.81051 * 21 20 19 23 23 C 1.54917 * 101.72335 * 36.10060 * 22 21 20 24 24 O 1.43375 * 109.63172 * 175.00459 * 20 19 15 25 25 C 1.53003 * 109.47232 * 299.99932 * 9 7 2 26 26 F 1.39901 * 109.47160 * 300.00327 * 25 9 7 27 27 F 1.39899 * 109.47208 * 59.99862 * 25 9 7 28 28 F 1.39896 * 109.47543 * 180.02562 * 25 9 7 29 29 H 0.96998 * 119.99791 * 359.97438 * 1 2 3 30 30 H 0.97007 * 119.99242 * 24.99147 * 11 9 7 31 31 H 0.97003 * 119.99346 * 359.97438 * 14 12 11 32 32 H 1.08994 * 109.47155 * 184.99832 * 17 15 14 33 33 H 1.09004 * 109.47295 * 305.00126 * 17 15 14 34 34 H 0.96700 * 113.99302 * 179.97438 * 18 17 15 35 35 H 1.09002 * 109.46804 * 305.00225 * 19 15 14 36 36 H 1.08999 * 109.47283 * 185.00098 * 19 15 14 37 37 H 1.08999 * 109.50965 * 54.68484 * 20 19 15 38 38 H 1.08998 * 110.97725 * 277.99324 * 22 21 20 39 39 H 1.08999 * 111.00989 * 154.22418 * 22 21 20 40 40 H 1.09005 * 110.69484 * 206.04129 * 23 22 21 41 41 H 1.08999 * 110.84156 * 82.90806 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.6240 -2.5567 -0.8902 11 7 2.2030 -3.6127 -0.0005 12 6 1.8369 -4.8123 -0.4939 13 8 0.7163 -4.9704 -0.9385 14 7 2.7128 -5.8366 -0.4943 15 6 2.3147 -7.1407 -1.0300 16 1 1.2631 -7.3199 -0.8059 17 6 2.5226 -7.1544 -2.5458 18 8 3.9168 -7.0360 -2.8363 19 6 3.1668 -8.2375 -0.3884 20 6 2.8655 -8.3063 1.1101 21 8 3.2953 -7.0906 1.7456 22 6 3.7850 -7.5045 3.0436 23 6 4.4400 -8.8688 2.7126 24 8 3.5739 -9.4078 1.6937 25 6 0.3719 -2.5805 1.2491 26 9 1.1766 -2.5066 2.3910 27 9 -0.5372 -1.5171 1.2497 28 9 -0.3272 -3.7922 1.2494 29 1 -0.4850 0.8400 0.0004 30 1 3.0969 -3.4865 0.3544 31 1 3.6069 -5.7103 -0.1399 32 1 2.1443 -8.0907 -2.9560 33 1 1.9858 -6.3182 -2.9938 34 1 4.1231 -7.0381 -3.7811 35 1 4.2226 -8.0106 -0.5366 36 1 2.9329 -9.1965 -0.8505 37 1 1.7941 -8.4391 1.2602 38 1 2.9637 -7.6270 3.7497 39 1 4.5234 -6.7995 3.4257 40 1 4.4501 -9.5144 3.5908 41 1 5.4498 -8.7305 2.3262 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364167136.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:41:11 Heat of formation + Delta-G solvation = -299.942938 kcal Electronic energy + Delta-G solvation = -32558.562757 eV Core-core repulsion = 27445.926494 eV Total energy + Delta-G solvation = -5112.636263 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.128 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -48.23626 -45.88468 -45.51402 -40.55260 -39.31520 -37.22132 -35.17153 -34.89495 -34.22671 -32.55351 -31.56220 -29.68099 -27.88233 -26.97273 -24.48054 -23.56898 -22.82236 -21.88960 -20.70384 -20.00581 -18.33599 -17.52503 -17.37206 -16.84017 -16.71352 -16.64312 -16.48309 -16.20107 -15.78355 -15.08704 -15.06302 -14.85276 -14.56542 -14.06565 -13.81331 -13.62776 -13.22617 -13.10442 -13.01486 -12.80787 -12.77976 -12.48686 -12.29186 -12.21446 -12.13572 -11.88225 -11.77727 -11.71813 -11.64719 -11.11651 -11.08574 -10.79653 -10.71704 -10.38443 -10.33677 -10.01086 -9.74238 -9.58646 -9.37749 -8.66541 -8.58349 -8.01702 -6.17759 -4.40665 3.21324 3.23031 3.27611 3.30108 3.37676 3.83970 3.92485 4.24075 4.33496 4.37782 4.66561 4.68920 4.74746 4.79502 4.95347 4.99339 5.00670 5.13259 5.30414 5.37262 5.37848 5.47370 5.56175 5.71476 5.73919 5.86675 5.94992 5.99047 6.14673 6.33219 6.89865 6.97485 7.01725 7.35896 7.49367 7.61088 7.69758 7.86028 8.57168 8.83825 9.23500 9.40610 10.73949 Molecular weight = 342.13amu Principal moments of inertia in cm(-1) A = 0.014390 B = 0.003721 C = 0.003431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1945.263669 B = 7523.265183 C = 8159.029524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.840 5.840 2 C 0.064 3.936 3 Si 0.915 3.085 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.271 1.271 7 C -0.549 4.549 8 H 0.076 0.924 9 C 0.263 3.737 10 H 0.083 0.917 11 N -0.726 5.726 12 C 0.702 3.298 13 O -0.595 6.595 14 N -0.730 5.730 15 C 0.175 3.825 16 H 0.099 0.901 17 C 0.063 3.937 18 O -0.569 6.569 19 C -0.133 4.133 20 C 0.232 3.768 21 O -0.361 6.361 22 C 0.015 3.985 23 C 0.022 3.978 24 O -0.388 6.388 25 C 0.416 3.584 26 F -0.211 7.211 27 F -0.139 7.139 28 F -0.216 7.216 29 H 0.267 0.733 30 H 0.394 0.606 31 H 0.398 0.602 32 H 0.049 0.951 33 H 0.058 0.942 34 H 0.375 0.625 35 H 0.088 0.912 36 H 0.094 0.906 37 H 0.084 0.916 38 H 0.075 0.925 39 H 0.109 0.891 40 H 0.097 0.903 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.937 -15.694 1.241 18.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.474 5.474 2 C -0.144 4.144 3 Si 0.741 3.259 4 H -0.203 1.203 5 H -0.209 1.209 6 H -0.196 1.196 7 C -0.587 4.587 8 H 0.094 0.906 9 C 0.157 3.843 10 H 0.101 0.899 11 N -0.378 5.378 12 C 0.402 3.598 13 O -0.473 6.473 14 N -0.386 5.386 15 C 0.069 3.931 16 H 0.117 0.883 17 C -0.016 4.016 18 O -0.374 6.374 19 C -0.172 4.172 20 C 0.137 3.863 21 O -0.281 6.281 22 C -0.062 4.062 23 C -0.055 4.055 24 O -0.309 6.309 25 C 0.360 3.640 26 F -0.193 7.193 27 F -0.120 7.120 28 F -0.198 7.198 29 H 0.078 0.922 30 H 0.227 0.773 31 H 0.233 0.767 32 H 0.067 0.933 33 H 0.076 0.924 34 H 0.221 0.779 35 H 0.106 0.894 36 H 0.112 0.888 37 H 0.102 0.898 38 H 0.093 0.907 39 H 0.127 0.873 40 H 0.115 0.885 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 7.667 -15.670 1.359 17.497 hybrid contribution 0.970 0.925 0.209 1.356 sum 8.636 -14.745 1.568 17.160 Atomic orbital electron populations 1.70414 1.05820 1.27207 1.43950 1.25077 0.95135 1.00030 0.94186 0.86225 0.79584 0.81775 0.78291 1.20261 1.20863 1.19580 1.20890 0.93767 0.88186 1.55813 0.90578 1.19546 0.88282 0.85045 0.91437 0.89905 1.45206 1.17260 1.09710 1.65582 1.16047 0.84237 0.80608 0.78869 1.90884 1.19897 1.83027 1.53526 1.44927 1.16422 1.09600 1.67639 1.20627 0.99573 0.82404 0.90542 0.88319 1.22705 0.82310 1.00150 0.96476 1.86461 1.24326 1.97236 1.29335 1.22209 1.02717 0.99433 0.92791 1.24139 0.95487 0.74840 0.91825 1.89349 1.82557 1.28351 1.27884 1.24379 0.98950 0.95793 0.87075 1.24173 0.94800 0.94882 0.91617 1.88871 1.57709 1.31312 1.53032 1.23175 0.80867 0.72730 0.87240 1.92978 1.74450 1.96194 1.55644 1.93394 1.68495 1.53908 1.96224 1.93067 1.81458 1.48343 1.96969 0.92227 0.77304 0.76739 0.93253 0.92381 0.77869 0.89377 0.88764 0.89837 0.90704 0.87282 0.88519 0.90681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -23.40 9.50 55.43 0.53 -22.87 16 2 C 0.06 1.70 5.20 -17.82 -0.09 1.60 16 3 Si 0.91 20.37 29.54 -169.99 -5.02 15.35 16 4 H -0.28 -6.08 7.11 56.52 0.40 -5.67 16 5 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 6 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 7 C -0.55 -14.31 8.46 -34.44 -0.29 -14.60 16 8 H 0.08 1.88 7.74 -52.49 -0.41 1.47 16 9 C 0.26 6.75 2.21 -69.08 -0.15 6.59 16 10 H 0.08 2.38 7.58 -51.93 -0.39 1.99 16 11 N -0.73 -15.59 4.99 -59.81 -0.30 -15.89 16 12 C 0.70 14.58 8.06 -86.92 -0.70 13.88 16 13 O -0.59 -14.45 14.58 5.29 0.08 -14.37 16 14 N -0.73 -11.63 3.84 -58.68 -0.23 -11.85 16 15 C 0.18 2.37 2.37 -67.93 -0.16 2.21 16 16 H 0.10 1.47 7.58 -51.93 -0.39 1.07 16 17 C 0.06 0.76 6.85 37.16 0.25 1.02 16 18 O -0.57 -6.42 12.83 -35.23 -0.45 -6.87 16 19 C -0.13 -1.49 4.65 -26.73 -0.12 -1.61 16 20 C 0.23 2.76 4.01 37.16 0.15 2.91 16 21 O -0.36 -4.66 9.19 -59.04 -0.54 -5.20 16 22 C 0.01 0.14 7.95 38.17 0.30 0.44 16 23 C 0.02 0.18 8.07 38.17 0.31 0.49 16 24 O -0.39 -4.40 11.22 -59.04 -0.66 -5.06 16 25 C 0.42 11.01 2.81 37.16 0.10 11.11 16 26 F -0.21 -5.36 16.94 2.25 0.04 -5.32 16 27 F -0.14 -3.94 12.91 2.25 0.03 -3.91 16 28 F -0.22 -5.72 15.67 2.25 0.04 -5.68 16 29 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 30 H 0.39 7.51 8.55 -40.82 -0.35 7.16 16 31 H 0.40 5.85 7.72 -40.82 -0.31 5.53 16 32 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.38 2.70 9.12 45.56 0.42 3.11 16 35 H 0.09 1.03 7.73 -51.93 -0.40 0.63 16 36 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.11 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 41 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 352.63 15.07 5.31 5.31 Total: -1.00 -33.24 352.63 -5.94 -39.19 By element: Atomic # 1 Polarization: 17.49 SS G_CDS: -4.36 Total: 13.13 kcal Atomic # 6 Polarization: 24.46 SS G_CDS: -0.40 Total: 24.05 kcal Atomic # 7 Polarization: -50.62 SS G_CDS: 0.00 Total: -50.62 kcal Atomic # 8 Polarization: -29.92 SS G_CDS: -1.58 Total: -31.50 kcal Atomic # 9 Polarization: -15.02 SS G_CDS: 0.10 Total: -14.92 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -33.24 -5.94 -39.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364167136.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -260.757 kcal (2) G-P(sol) polarization free energy of solvation -33.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -293.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -299.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds