Wall clock time and date at job start Wed Apr 1 2020 00:41:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 120.00294 * 2 1 4 4 H 1.48496 * 109.47378 * 270.00348 * 3 2 1 5 5 H 1.48500 * 109.46996 * 29.99937 * 3 2 1 6 6 H 1.48498 * 109.47361 * 150.00110 * 3 2 1 7 7 C 1.37879 * 120.00044 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00272 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99841 * 359.97438 * 7 2 1 10 10 H 1.08997 * 109.47569 * 59.99737 * 9 7 2 11 11 N 1.46502 * 109.47450 * 180.02562 * 9 7 2 12 12 C 1.34774 * 120.00345 * 205.00407 * 11 9 7 13 13 O 1.21585 * 119.99851 * 359.97438 * 12 11 9 14 14 N 1.34779 * 120.00122 * 179.97438 * 12 11 9 15 15 C 1.46497 * 120.00108 * 179.97438 * 14 12 11 16 16 H 1.09005 * 109.46841 * 324.99774 * 15 14 12 17 17 C 1.53002 * 109.47108 * 84.99768 * 15 14 12 18 18 O 1.42902 * 109.46712 * 65.00079 * 17 15 14 19 19 C 1.52995 * 109.47351 * 205.00137 * 15 14 12 20 20 C 1.52998 * 109.47159 * 64.99851 * 19 15 14 21 21 O 1.43757 * 109.63534 * 294.36496 * 20 19 15 22 22 C 1.44778 * 104.81805 * 215.81051 * 21 20 19 23 23 C 1.54917 * 101.72335 * 36.10060 * 22 21 20 24 24 O 1.43375 * 109.63172 * 175.00459 * 20 19 15 25 25 C 1.53003 * 109.47232 * 299.99932 * 9 7 2 26 26 F 1.39901 * 109.47160 * 300.00327 * 25 9 7 27 27 F 1.39899 * 109.47208 * 59.99862 * 25 9 7 28 28 F 1.39896 * 109.47543 * 180.02562 * 25 9 7 29 29 H 0.96998 * 119.99791 * 359.97438 * 1 2 3 30 30 H 0.97007 * 119.99242 * 24.99147 * 11 9 7 31 31 H 0.97003 * 119.99346 * 359.97438 * 14 12 11 32 32 H 1.08994 * 109.47155 * 184.99832 * 17 15 14 33 33 H 1.09004 * 109.47295 * 305.00126 * 17 15 14 34 34 H 0.96700 * 113.99302 * 179.97438 * 18 17 15 35 35 H 1.09002 * 109.46804 * 305.00225 * 19 15 14 36 36 H 1.08999 * 109.47283 * 185.00098 * 19 15 14 37 37 H 1.08999 * 109.50965 * 54.68484 * 20 19 15 38 38 H 1.08998 * 110.97725 * 277.99324 * 22 21 20 39 39 H 1.08999 * 111.00989 * 154.22418 * 22 21 20 40 40 H 1.09005 * 110.69484 * 206.04129 * 23 22 21 41 41 H 1.08999 * 110.84156 * 82.90806 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.6240 -2.5567 -0.8902 11 7 2.2030 -3.6127 -0.0005 12 6 1.8369 -4.8123 -0.4939 13 8 0.7163 -4.9704 -0.9385 14 7 2.7128 -5.8366 -0.4943 15 6 2.3147 -7.1407 -1.0300 16 1 1.2631 -7.3199 -0.8059 17 6 2.5226 -7.1544 -2.5458 18 8 3.9168 -7.0360 -2.8363 19 6 3.1668 -8.2375 -0.3884 20 6 2.8655 -8.3063 1.1101 21 8 3.2953 -7.0906 1.7456 22 6 3.7850 -7.5045 3.0436 23 6 4.4400 -8.8688 2.7126 24 8 3.5739 -9.4078 1.6937 25 6 0.3719 -2.5805 1.2491 26 9 1.1766 -2.5066 2.3910 27 9 -0.5372 -1.5171 1.2497 28 9 -0.3272 -3.7922 1.2494 29 1 -0.4850 0.8400 0.0004 30 1 3.0969 -3.4865 0.3544 31 1 3.6069 -5.7103 -0.1399 32 1 2.1443 -8.0907 -2.9560 33 1 1.9858 -6.3182 -2.9938 34 1 4.1231 -7.0381 -3.7811 35 1 4.2226 -8.0106 -0.5366 36 1 2.9329 -9.1965 -0.8505 37 1 1.7941 -8.4391 1.2602 38 1 2.9637 -7.6270 3.7497 39 1 4.5234 -6.7995 3.4257 40 1 4.4501 -9.5144 3.5908 41 1 5.4498 -8.7305 2.3262 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364167136.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:41:09 Heat of formation + Delta-G solvation = -327.109086 kcal Electronic energy + Delta-G solvation = -32559.740770 eV Core-core repulsion = 27445.926494 eV Total energy + Delta-G solvation = -5113.814275 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.128 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -50.37334 -48.00431 -47.69094 -41.48314 -40.79096 -38.35545 -36.50091 -36.00943 -35.65943 -34.44582 -32.79290 -30.76838 -29.55032 -27.94887 -26.55066 -24.44213 -23.90458 -23.40988 -22.10707 -21.56234 -19.99915 -18.84565 -18.78285 -18.59677 -18.38310 -18.20790 -17.75152 -17.51308 -17.12637 -16.75216 -16.30920 -16.16023 -15.81583 -15.38169 -15.10771 -14.91862 -14.83116 -14.74980 -14.51538 -14.41779 -14.25745 -14.07826 -13.99105 -13.93671 -13.83719 -13.63478 -13.22308 -13.01220 -12.81828 -12.68101 -12.57122 -12.44417 -12.19039 -12.02690 -11.55687 -11.20086 -11.15233 -10.88451 -10.65894 -10.61930 -10.18381 -9.66254 -8.18887 -6.49345 1.47217 1.48728 1.59838 1.81758 2.23754 2.39143 2.48077 2.61477 2.96879 2.98200 3.35916 3.45412 3.67451 3.82355 3.83872 3.88628 3.92584 4.07562 4.16168 4.24456 4.25183 4.44783 4.49087 4.55469 4.65073 4.74389 4.80923 4.85563 4.93489 4.97204 5.19732 5.49433 5.56852 5.68868 5.70069 6.08072 6.24653 6.55856 6.91544 7.19869 7.28244 7.75726 8.74044 Molecular weight = 342.13amu Principal moments of inertia in cm(-1) A = 0.014390 B = 0.003721 C = 0.003431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1945.263669 B = 7523.265183 C = 8159.029524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.015 3.985 3 Si 0.984 3.016 4 H -0.270 1.270 5 H -0.284 1.284 6 H -0.259 1.259 7 C -0.560 4.560 8 H 0.090 0.910 9 C 0.272 3.728 10 H 0.045 0.955 11 N -0.721 5.721 12 C 0.699 3.301 13 O -0.634 6.634 14 N -0.709 5.709 15 C 0.167 3.833 16 H 0.082 0.918 17 C 0.071 3.929 18 O -0.577 6.577 19 C -0.117 4.117 20 C 0.231 3.769 21 O -0.388 6.388 22 C 0.007 3.993 23 C 0.022 3.978 24 O -0.399 6.399 25 C 0.414 3.586 26 F -0.204 7.204 27 F -0.152 7.152 28 F -0.219 7.219 29 H 0.268 0.732 30 H 0.406 0.594 31 H 0.407 0.593 32 H 0.081 0.919 33 H 0.028 0.972 34 H 0.394 0.606 35 H 0.088 0.912 36 H 0.115 0.885 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.126 0.874 40 H 0.120 0.880 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.313 -16.342 1.439 19.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.190 4.190 3 Si 0.807 3.193 4 H -0.195 1.195 5 H -0.210 1.210 6 H -0.183 1.183 7 C -0.597 4.597 8 H 0.108 0.892 9 C 0.164 3.836 10 H 0.062 0.938 11 N -0.375 5.375 12 C 0.399 3.601 13 O -0.515 6.515 14 N -0.365 5.365 15 C 0.062 3.938 16 H 0.100 0.900 17 C -0.008 4.008 18 O -0.384 6.384 19 C -0.155 4.155 20 C 0.136 3.864 21 O -0.308 6.308 22 C -0.069 4.069 23 C -0.054 4.054 24 O -0.321 6.321 25 C 0.357 3.643 26 F -0.186 7.186 27 F -0.133 7.133 28 F -0.201 7.201 29 H 0.078 0.922 30 H 0.242 0.758 31 H 0.243 0.757 32 H 0.099 0.901 33 H 0.046 0.954 34 H 0.244 0.756 35 H 0.107 0.893 36 H 0.134 0.866 37 H 0.090 0.910 38 H 0.092 0.908 39 H 0.144 0.856 40 H 0.138 0.862 41 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 10.112 -16.373 1.553 19.306 hybrid contribution 0.246 1.029 0.174 1.072 sum 10.357 -15.343 1.727 18.592 Atomic orbital electron populations 1.70544 1.07477 1.28087 1.44806 1.26001 0.95902 1.03642 0.93503 0.85150 0.78482 0.77067 0.78556 1.19527 1.20955 1.18319 1.21207 0.94438 0.88359 1.55654 0.89234 1.19132 0.88378 0.86602 0.89460 0.93772 1.44972 1.17169 1.09273 1.66041 1.16207 0.84296 0.81062 0.78526 1.90854 1.21845 1.83660 1.55163 1.44818 1.15853 1.09280 1.66511 1.20859 0.99303 0.81699 0.91970 0.89998 1.22510 0.82732 1.00532 0.95027 1.86407 1.23398 1.97250 1.31382 1.22092 1.01930 0.99211 0.92269 1.24085 0.95135 0.74960 0.92254 1.89309 1.82846 1.29210 1.29454 1.24599 0.99430 0.96971 0.85862 1.24372 0.94658 0.94518 0.91833 1.88850 1.58206 1.31222 1.53782 1.23338 0.80819 0.72288 0.87837 1.92975 1.74168 1.96155 1.55301 1.93368 1.69031 1.54561 1.96331 1.93057 1.81596 1.48425 1.97016 0.92204 0.75804 0.75698 0.90081 0.95361 0.75638 0.89308 0.86647 0.90965 0.90818 0.85601 0.86219 0.89481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -49.36 9.50 21.45 0.20 -49.15 16 2 C 0.01 0.77 5.20 84.65 0.44 1.21 16 3 Si 0.98 41.12 29.54 68.60 2.03 43.15 16 4 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 5 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 6 H -0.26 -10.26 7.11 99.48 0.71 -9.56 16 7 C -0.56 -29.03 8.46 25.60 0.22 -28.81 16 8 H 0.09 4.30 7.74 -2.91 -0.02 4.28 16 9 C 0.27 14.22 2.21 44.25 0.10 14.32 16 10 H 0.04 2.66 7.58 -2.39 -0.02 2.64 16 11 N -0.72 -31.19 4.99 -461.41 -2.30 -33.49 16 12 C 0.70 29.43 8.06 179.05 1.44 30.87 16 13 O -0.63 -31.78 14.58 -3.99 -0.06 -31.84 16 14 N -0.71 -22.34 3.84 -457.82 -1.76 -24.10 16 15 C 0.17 4.41 2.37 44.99 0.11 4.52 16 16 H 0.08 2.47 7.58 -2.38 -0.02 2.45 16 17 C 0.07 1.64 6.85 71.98 0.49 2.13 16 18 O -0.58 -11.79 12.83 -148.98 -1.91 -13.70 16 19 C -0.12 -2.41 4.65 30.59 0.14 -2.26 16 20 C 0.23 5.25 4.01 71.98 0.29 5.54 16 21 O -0.39 -9.60 9.19 -126.22 -1.16 -10.76 16 22 C 0.01 0.13 7.95 72.64 0.58 0.71 16 23 C 0.02 0.32 8.07 72.64 0.59 0.90 16 24 O -0.40 -8.31 11.22 -126.22 -1.42 -9.72 16 25 C 0.41 22.25 2.81 71.98 0.20 22.45 16 26 F -0.20 -10.37 16.94 44.97 0.76 -9.61 16 27 F -0.15 -8.79 12.91 44.97 0.58 -8.21 16 28 F -0.22 -11.84 15.67 44.97 0.70 -11.13 16 29 H 0.27 14.30 8.31 -92.71 -0.77 13.53 16 30 H 0.41 15.23 8.55 -92.70 -0.79 14.44 16 31 H 0.41 11.51 7.72 -92.71 -0.72 10.80 16 32 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.03 0.82 8.14 -2.38 -0.02 0.80 16 34 H 0.39 4.75 9.12 -74.06 -0.68 4.08 16 35 H 0.09 1.86 7.73 -2.39 -0.02 1.84 16 36 H 0.12 1.91 8.14 -2.39 -0.02 1.89 16 37 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 38 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.13 1.69 8.14 -2.39 -0.02 1.68 16 40 H 0.12 1.17 8.14 -2.38 -0.02 1.15 16 41 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 Total: -1.00 -72.11 352.63 -0.80 -72.91 By element: Atomic # 1 Polarization: 35.15 SS G_CDS: -1.07 Total: 34.09 kcal Atomic # 6 Polarization: 46.97 SS G_CDS: 4.60 Total: 51.57 kcal Atomic # 7 Polarization: -102.88 SS G_CDS: -3.86 Total: -106.74 kcal Atomic # 8 Polarization: -61.48 SS G_CDS: -4.54 Total: -66.03 kcal Atomic # 9 Polarization: -30.99 SS G_CDS: 2.05 Total: -28.95 kcal Atomic # 14 Polarization: 41.12 SS G_CDS: 2.03 Total: 43.15 kcal Total: -72.11 -0.80 -72.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364167136.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -254.197 kcal (2) G-P(sol) polarization free energy of solvation -72.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -326.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -327.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds