Wall clock time and date at job start Wed Apr 1 2020 00:41:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 119.99778 * 2 1 4 4 H 1.48504 * 109.46704 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47303 * 300.00556 * 3 2 1 6 6 H 1.48495 * 109.46964 * 60.01086 * 3 2 1 7 7 C 1.37871 * 120.00217 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00409 * 179.97438 * 7 2 1 9 9 C 1.50707 * 120.00014 * 359.97438 * 7 2 1 10 10 H 1.09000 * 109.47048 * 300.00782 * 9 7 2 11 11 N 1.46492 * 109.47460 * 180.02562 * 9 7 2 12 12 C 1.34781 * 120.00297 * 155.00264 * 11 9 7 13 13 O 1.21582 * 119.99664 * 359.97438 * 12 11 9 14 14 N 1.34775 * 120.00047 * 180.02562 * 12 11 9 15 15 C 1.46494 * 119.99964 * 179.97438 * 14 12 11 16 16 H 1.09005 * 109.46988 * 35.00197 * 15 14 12 17 17 C 1.53002 * 109.47438 * 275.00346 * 15 14 12 18 18 O 1.42906 * 109.46555 * 294.99580 * 17 15 14 19 19 C 1.52999 * 109.47203 * 154.99904 * 15 14 12 20 20 C 1.52998 * 109.47318 * 294.99998 * 19 15 14 21 21 O 1.43362 * 109.63528 * 185.00017 * 20 19 15 22 22 C 1.44192 * 107.29075 * 239.60424 * 21 20 19 23 23 C 1.54916 * 103.23232 * 338.47438 * 22 21 20 24 24 O 1.43751 * 109.50660 * 65.71002 * 20 19 15 25 25 C 1.53003 * 109.46866 * 60.00275 * 9 7 2 26 26 F 1.39903 * 109.47080 * 180.02562 * 25 9 7 27 27 F 1.39899 * 109.47146 * 300.00013 * 25 9 7 28 28 F 1.39892 * 109.47411 * 60.00312 * 25 9 7 29 29 H 0.97005 * 120.00246 * 359.97438 * 1 2 3 30 30 H 0.97001 * 120.00020 * 334.99779 * 11 9 7 31 31 H 0.96996 * 119.99988 * 359.97438 * 14 12 11 32 32 H 1.09000 * 109.47133 * 54.99237 * 17 15 14 33 33 H 1.08999 * 109.47683 * 175.00182 * 17 15 14 34 34 H 0.96700 * 113.99705 * 179.97438 * 18 17 15 35 35 H 1.09007 * 109.46996 * 175.00073 * 19 15 14 36 36 H 1.09000 * 109.47207 * 55.00182 * 19 15 14 37 37 H 1.09001 * 109.62884 * 305.39741 * 20 19 15 38 38 H 1.09002 * 110.69702 * 96.95880 * 22 21 20 39 39 H 1.08997 * 110.69747 * 219.99465 * 22 21 20 40 40 H 1.08994 * 110.97969 * 153.75221 * 23 22 21 41 41 H 1.08995 * 110.97853 * 277.54723 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8902 2.3965 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.6246 -2.5571 0.8896 11 7 2.2030 -3.6126 -0.0005 12 6 1.8368 -4.8123 0.4927 13 8 0.7166 -4.9702 0.9381 14 7 2.7128 -5.8366 0.4931 15 6 2.3151 -7.1404 1.0298 16 1 1.2633 -7.3197 0.8063 17 6 2.5238 -7.1534 2.5454 18 8 3.9182 -7.0348 2.8351 19 6 3.1669 -8.2374 0.3881 20 6 2.8648 -8.3071 -1.1101 21 8 3.5727 -9.4088 -1.6936 22 6 4.4409 -8.8698 -2.7108 23 6 3.7896 -7.5048 -3.0462 24 8 3.2966 -7.0913 -1.7439 25 6 0.3710 -2.5799 -1.2495 26 9 -0.3289 -3.7913 -1.2493 27 9 -0.5381 -1.5166 -1.2490 28 9 1.1748 -2.5056 -2.3920 29 1 -0.4851 0.8401 0.0004 30 1 3.0968 -3.4866 -0.3556 31 1 3.6067 -5.7104 0.1382 32 1 1.9873 -6.3169 2.9933 33 1 2.1458 -8.0895 2.9563 34 1 4.1251 -7.0357 3.7797 35 1 2.9332 -9.1963 0.8509 36 1 4.2228 -8.0105 0.5357 37 1 1.7934 -8.4386 -1.2618 38 1 5.4496 -8.7301 -2.3220 39 1 4.4539 -9.5163 -3.5883 40 1 4.5303 -6.8022 -3.4277 41 1 2.9692 -7.6272 -3.7534 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364167255.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:41:34 Heat of formation + Delta-G solvation = -299.835343 kcal Electronic energy + Delta-G solvation = -32556.650616 eV Core-core repulsion = 27444.019019 eV Total energy + Delta-G solvation = -5112.631597 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.128 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -48.23671 -45.88729 -45.51268 -40.52648 -39.31190 -37.21955 -35.15639 -34.88189 -34.22489 -32.55434 -31.56185 -29.68620 -27.88328 -26.97217 -24.48226 -23.56756 -22.81047 -21.88797 -20.70302 -20.00555 -18.33518 -17.51943 -17.36948 -16.83372 -16.71272 -16.64287 -16.48396 -16.20283 -15.78281 -15.08689 -15.05672 -14.85083 -14.56357 -14.06114 -13.80539 -13.62563 -13.22576 -13.10827 -13.01145 -12.80264 -12.77539 -12.48592 -12.29302 -12.21695 -12.13497 -11.88495 -11.77747 -11.71916 -11.65235 -11.10970 -11.08552 -10.81481 -10.70841 -10.39082 -10.33711 -10.01051 -9.74208 -9.56455 -9.37729 -8.67453 -8.58390 -8.01615 -6.17863 -4.40772 3.20735 3.22523 3.27646 3.30649 3.38022 3.83537 3.92466 4.23953 4.33534 4.37490 4.66599 4.68972 4.74714 4.79529 4.95416 4.99172 5.00459 5.13233 5.30317 5.37208 5.37638 5.47416 5.55972 5.71193 5.73891 5.86719 5.95004 5.99089 6.14814 6.33092 6.89328 6.97444 7.01804 7.36036 7.49514 7.61151 7.69654 7.86037 8.57392 8.83858 9.23496 9.40649 10.73778 Molecular weight = 342.13amu Principal moments of inertia in cm(-1) A = 0.014389 B = 0.003720 C = 0.003431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1945.453021 B = 7525.172434 C = 8160.033763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.840 5.840 2 C 0.064 3.936 3 Si 0.914 3.086 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.280 1.280 7 C -0.549 4.549 8 H 0.077 0.923 9 C 0.263 3.737 10 H 0.083 0.917 11 N -0.725 5.725 12 C 0.702 3.298 13 O -0.595 6.595 14 N -0.729 5.729 15 C 0.175 3.825 16 H 0.099 0.901 17 C 0.063 3.937 18 O -0.569 6.569 19 C -0.133 4.133 20 C 0.232 3.768 21 O -0.388 6.388 22 C 0.022 3.978 23 C 0.015 3.985 24 O -0.363 6.363 25 C 0.416 3.584 26 F -0.216 7.216 27 F -0.139 7.139 28 F -0.211 7.211 29 H 0.266 0.734 30 H 0.394 0.606 31 H 0.398 0.602 32 H 0.058 0.942 33 H 0.049 0.951 34 H 0.375 0.625 35 H 0.094 0.906 36 H 0.088 0.912 37 H 0.084 0.916 38 H 0.075 0.925 39 H 0.097 0.903 40 H 0.110 0.890 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.956 -15.707 -1.256 18.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.474 5.474 2 C -0.144 4.144 3 Si 0.741 3.259 4 H -0.195 1.195 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.586 4.586 8 H 0.095 0.905 9 C 0.156 3.844 10 H 0.101 0.899 11 N -0.378 5.378 12 C 0.402 3.598 13 O -0.473 6.473 14 N -0.386 5.386 15 C 0.069 3.931 16 H 0.117 0.883 17 C -0.016 4.016 18 O -0.374 6.374 19 C -0.172 4.172 20 C 0.137 3.863 21 O -0.309 6.309 22 C -0.055 4.055 23 C -0.062 4.062 24 O -0.283 6.283 25 C 0.360 3.640 26 F -0.198 7.198 27 F -0.120 7.120 28 F -0.193 7.193 29 H 0.077 0.923 30 H 0.227 0.773 31 H 0.233 0.767 32 H 0.076 0.924 33 H 0.067 0.933 34 H 0.221 0.779 35 H 0.112 0.888 36 H 0.106 0.894 37 H 0.102 0.898 38 H 0.093 0.907 39 H 0.115 0.885 40 H 0.128 0.872 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 7.690 -15.685 -1.369 17.522 hybrid contribution 0.958 0.929 -0.216 1.352 sum 8.649 -14.755 -1.586 17.177 Atomic orbital electron populations 1.70425 1.05818 1.27094 1.44052 1.25077 0.95134 1.00039 0.94189 0.86174 0.79813 0.82101 0.77805 1.19452 1.20642 1.20622 1.20932 0.93802 0.88170 1.55690 0.90523 1.19552 0.88283 0.85067 0.91449 0.89903 1.45203 1.17254 1.09703 1.65594 1.16047 0.84235 0.80608 0.78873 1.90883 1.19924 1.83030 1.53496 1.44924 1.16445 1.09621 1.67589 1.20627 0.99575 0.82412 0.90534 0.88322 1.22706 0.82303 1.00148 0.96482 1.86462 1.24314 1.97240 1.29346 1.22211 1.02712 0.99422 0.92806 1.24132 0.95467 0.74855 0.91816 1.88871 1.57611 1.31308 1.53124 1.24158 0.94767 0.94894 0.91651 1.24459 0.98955 0.95754 0.87010 1.89420 1.82507 1.28374 1.27973 1.23173 0.80890 0.72734 0.87214 1.93068 1.81416 1.48390 1.96967 1.93395 1.68486 1.53917 1.96217 1.92975 1.74492 1.96188 1.55604 0.92285 0.77307 0.76735 0.92382 0.93253 0.77869 0.88777 0.89375 0.89826 0.90703 0.88511 0.87242 0.90646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -23.40 9.50 55.43 0.53 -22.87 16 2 C 0.06 1.69 5.20 -17.82 -0.09 1.60 16 3 Si 0.91 20.37 29.54 -169.99 -5.02 15.35 16 4 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 5 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 6 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 7 C -0.55 -14.29 8.46 -34.44 -0.29 -14.58 16 8 H 0.08 1.90 7.74 -52.49 -0.41 1.49 16 9 C 0.26 6.74 2.21 -69.08 -0.15 6.58 16 10 H 0.08 2.38 7.58 -51.93 -0.39 1.99 16 11 N -0.73 -15.59 4.99 -59.81 -0.30 -15.89 16 12 C 0.70 14.58 8.06 -86.92 -0.70 13.88 16 13 O -0.59 -14.45 14.58 5.29 0.08 -14.37 16 14 N -0.73 -11.63 3.84 -58.68 -0.23 -11.86 16 15 C 0.18 2.37 2.37 -67.93 -0.16 2.21 16 16 H 0.10 1.47 7.58 -51.93 -0.39 1.07 16 17 C 0.06 0.76 6.85 37.16 0.25 1.02 16 18 O -0.57 -6.42 12.83 -35.23 -0.45 -6.88 16 19 C -0.13 -1.49 4.65 -26.73 -0.12 -1.61 16 20 C 0.23 2.77 4.02 37.16 0.15 2.92 16 21 O -0.39 -4.39 11.22 -59.04 -0.66 -5.06 16 22 C 0.02 0.18 8.06 38.17 0.31 0.49 16 23 C 0.01 0.14 7.99 38.17 0.30 0.44 16 24 O -0.36 -4.67 9.18 -59.04 -0.54 -5.22 16 25 C 0.42 11.01 2.81 37.16 0.10 11.11 16 26 F -0.22 -5.72 15.68 2.25 0.04 -5.69 16 27 F -0.14 -3.94 12.91 2.25 0.03 -3.91 16 28 F -0.21 -5.36 16.94 2.25 0.04 -5.32 16 29 H 0.27 7.00 8.31 -40.82 -0.34 6.67 16 30 H 0.39 7.51 8.55 -40.82 -0.35 7.16 16 31 H 0.40 5.85 7.71 -40.82 -0.31 5.54 16 32 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.38 2.70 9.12 45.56 0.42 3.12 16 35 H 0.09 0.90 8.14 -51.92 -0.42 0.48 16 36 H 0.09 1.03 7.73 -51.93 -0.40 0.63 16 37 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.11 0.84 8.14 -51.93 -0.42 0.41 16 41 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 352.66 15.07 5.31 5.31 Total: -1.00 -33.28 352.66 -5.94 -39.22 By element: Atomic # 1 Polarization: 17.47 SS G_CDS: -4.36 Total: 13.11 kcal Atomic # 6 Polarization: 24.46 SS G_CDS: -0.40 Total: 24.06 kcal Atomic # 7 Polarization: -50.62 SS G_CDS: 0.00 Total: -50.62 kcal Atomic # 8 Polarization: -29.94 SS G_CDS: -1.58 Total: -31.52 kcal Atomic # 9 Polarization: -15.02 SS G_CDS: 0.10 Total: -14.92 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -33.28 -5.94 -39.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364167255.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -260.616 kcal (2) G-P(sol) polarization free energy of solvation -33.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -293.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -299.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds