Wall clock time and date at job start Wed Apr 1 2020 00:41:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 119.99778 * 2 1 4 4 H 1.48504 * 109.46704 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47303 * 300.00556 * 3 2 1 6 6 H 1.48495 * 109.46964 * 60.01086 * 3 2 1 7 7 C 1.37871 * 120.00217 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00409 * 179.97438 * 7 2 1 9 9 C 1.50707 * 120.00014 * 359.97438 * 7 2 1 10 10 H 1.09000 * 109.47048 * 300.00782 * 9 7 2 11 11 N 1.46492 * 109.47460 * 180.02562 * 9 7 2 12 12 C 1.34781 * 120.00297 * 155.00264 * 11 9 7 13 13 O 1.21582 * 119.99664 * 359.97438 * 12 11 9 14 14 N 1.34775 * 120.00047 * 180.02562 * 12 11 9 15 15 C 1.46494 * 119.99964 * 179.97438 * 14 12 11 16 16 H 1.09005 * 109.46988 * 35.00197 * 15 14 12 17 17 C 1.53002 * 109.47438 * 275.00346 * 15 14 12 18 18 O 1.42906 * 109.46555 * 294.99580 * 17 15 14 19 19 C 1.52999 * 109.47203 * 154.99904 * 15 14 12 20 20 C 1.52998 * 109.47318 * 294.99998 * 19 15 14 21 21 O 1.43362 * 109.63528 * 185.00017 * 20 19 15 22 22 C 1.44192 * 107.29075 * 239.60424 * 21 20 19 23 23 C 1.54916 * 103.23232 * 338.47438 * 22 21 20 24 24 O 1.43751 * 109.50660 * 65.71002 * 20 19 15 25 25 C 1.53003 * 109.46866 * 60.00275 * 9 7 2 26 26 F 1.39903 * 109.47080 * 180.02562 * 25 9 7 27 27 F 1.39899 * 109.47146 * 300.00013 * 25 9 7 28 28 F 1.39892 * 109.47411 * 60.00312 * 25 9 7 29 29 H 0.97005 * 120.00246 * 359.97438 * 1 2 3 30 30 H 0.97001 * 120.00020 * 334.99779 * 11 9 7 31 31 H 0.96996 * 119.99988 * 359.97438 * 14 12 11 32 32 H 1.09000 * 109.47133 * 54.99237 * 17 15 14 33 33 H 1.08999 * 109.47683 * 175.00182 * 17 15 14 34 34 H 0.96700 * 113.99705 * 179.97438 * 18 17 15 35 35 H 1.09007 * 109.46996 * 175.00073 * 19 15 14 36 36 H 1.09000 * 109.47207 * 55.00182 * 19 15 14 37 37 H 1.09001 * 109.62884 * 305.39741 * 20 19 15 38 38 H 1.09002 * 110.69702 * 96.95880 * 22 21 20 39 39 H 1.08997 * 110.69747 * 219.99465 * 22 21 20 40 40 H 1.08994 * 110.97969 * 153.75221 * 23 22 21 41 41 H 1.08995 * 110.97853 * 277.54723 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8902 2.3965 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.6246 -2.5571 0.8896 11 7 2.2030 -3.6126 -0.0005 12 6 1.8368 -4.8123 0.4927 13 8 0.7166 -4.9702 0.9381 14 7 2.7128 -5.8366 0.4931 15 6 2.3151 -7.1404 1.0298 16 1 1.2633 -7.3197 0.8063 17 6 2.5238 -7.1534 2.5454 18 8 3.9182 -7.0348 2.8351 19 6 3.1669 -8.2374 0.3881 20 6 2.8648 -8.3071 -1.1101 21 8 3.5727 -9.4088 -1.6936 22 6 4.4409 -8.8698 -2.7108 23 6 3.7896 -7.5048 -3.0462 24 8 3.2966 -7.0913 -1.7439 25 6 0.3710 -2.5799 -1.2495 26 9 -0.3289 -3.7913 -1.2493 27 9 -0.5381 -1.5166 -1.2490 28 9 1.1748 -2.5056 -2.3920 29 1 -0.4851 0.8401 0.0004 30 1 3.0968 -3.4866 -0.3556 31 1 3.6067 -5.7104 0.1382 32 1 1.9873 -6.3169 2.9933 33 1 2.1458 -8.0895 2.9563 34 1 4.1251 -7.0357 3.7797 35 1 2.9332 -9.1963 0.8509 36 1 4.2228 -8.0105 0.5357 37 1 1.7934 -8.4386 -1.2618 38 1 5.4496 -8.7301 -2.3220 39 1 4.4539 -9.5163 -3.5883 40 1 4.5303 -6.8022 -3.4277 41 1 2.9692 -7.6272 -3.7534 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364167255.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:41:33 Heat of formation + Delta-G solvation = -327.033341 kcal Electronic energy + Delta-G solvation = -32557.830010 eV Core-core repulsion = 27444.019019 eV Total energy + Delta-G solvation = -5113.810991 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.128 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -50.37388 -48.00677 -47.69006 -41.46283 -40.78160 -38.35350 -36.50170 -35.99083 -35.64784 -34.44698 -32.79118 -30.77202 -29.55237 -27.94874 -26.55293 -24.44175 -23.89744 -23.40142 -22.10594 -21.56198 -19.99934 -18.84569 -18.78350 -18.59737 -18.37870 -18.20607 -17.74784 -17.50792 -17.12773 -16.75169 -16.30589 -16.15779 -15.80983 -15.38057 -15.10678 -14.91953 -14.83088 -14.74001 -14.51408 -14.41918 -14.26099 -14.07812 -13.99278 -13.93428 -13.84151 -13.62396 -13.21841 -13.01188 -12.80957 -12.67606 -12.60632 -12.44737 -12.18324 -12.02819 -11.52210 -11.20110 -11.15791 -10.88469 -10.67653 -10.61860 -10.18322 -9.66196 -8.19017 -6.49459 1.46804 1.47871 1.60741 1.81884 2.23708 2.38924 2.47916 2.61394 2.96728 2.97873 3.35935 3.45429 3.67426 3.82331 3.83912 3.88862 3.92600 4.07688 4.16039 4.24294 4.25071 4.44732 4.49154 4.55400 4.65098 4.74280 4.80889 4.85553 4.93499 4.96951 5.19802 5.49585 5.56801 5.68895 5.70112 6.07611 6.24639 6.56043 6.91554 7.19844 7.28257 7.75753 8.74031 Molecular weight = 342.13amu Principal moments of inertia in cm(-1) A = 0.014389 B = 0.003720 C = 0.003431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1945.453021 B = 7525.172434 C = 8160.033763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.014 3.986 3 Si 0.984 3.016 4 H -0.256 1.256 5 H -0.281 1.281 6 H -0.277 1.277 7 C -0.559 4.559 8 H 0.090 0.910 9 C 0.272 3.728 10 H 0.045 0.955 11 N -0.721 5.721 12 C 0.699 3.301 13 O -0.634 6.634 14 N -0.709 5.709 15 C 0.167 3.833 16 H 0.082 0.918 17 C 0.071 3.929 18 O -0.577 6.577 19 C -0.117 4.117 20 C 0.231 3.769 21 O -0.399 6.399 22 C 0.022 3.978 23 C 0.008 3.992 24 O -0.389 6.389 25 C 0.414 3.586 26 F -0.219 7.219 27 F -0.152 7.152 28 F -0.204 7.204 29 H 0.268 0.732 30 H 0.406 0.594 31 H 0.407 0.593 32 H 0.028 0.972 33 H 0.081 0.919 34 H 0.394 0.606 35 H 0.115 0.885 36 H 0.088 0.912 37 H 0.073 0.927 38 H 0.087 0.913 39 H 0.120 0.880 40 H 0.127 0.873 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.331 -16.357 -1.447 19.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.191 4.191 3 Si 0.808 3.192 4 H -0.180 1.180 5 H -0.207 1.207 6 H -0.203 1.203 7 C -0.596 4.596 8 H 0.108 0.892 9 C 0.164 3.836 10 H 0.062 0.938 11 N -0.375 5.375 12 C 0.399 3.601 13 O -0.515 6.515 14 N -0.365 5.365 15 C 0.062 3.938 16 H 0.100 0.900 17 C -0.008 4.008 18 O -0.384 6.384 19 C -0.155 4.155 20 C 0.136 3.864 21 O -0.321 6.321 22 C -0.054 4.054 23 C -0.068 4.068 24 O -0.310 6.310 25 C 0.357 3.643 26 F -0.201 7.201 27 F -0.133 7.133 28 F -0.186 7.186 29 H 0.078 0.922 30 H 0.242 0.758 31 H 0.243 0.757 32 H 0.046 0.954 33 H 0.099 0.901 34 H 0.244 0.756 35 H 0.133 0.867 36 H 0.107 0.893 37 H 0.090 0.910 38 H 0.105 0.895 39 H 0.138 0.862 40 H 0.145 0.855 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 10.135 -16.390 -1.556 19.333 hybrid contribution 0.233 1.035 -0.186 1.078 sum 10.368 -15.355 -1.742 18.609 Atomic orbital electron populations 1.70550 1.07475 1.28021 1.44881 1.25999 0.95904 1.03645 0.93514 0.85100 0.79074 0.77417 0.77638 1.17975 1.20651 1.20250 1.21240 0.94441 0.88346 1.55539 0.89227 1.19138 0.88378 0.86618 0.89471 0.93765 1.44969 1.17163 1.09268 1.66052 1.16207 0.84293 0.81061 0.78529 1.90854 1.21871 1.83662 1.55133 1.44815 1.15874 1.09300 1.66463 1.20859 0.99304 0.81708 0.91961 0.90000 1.22511 0.82725 1.00530 0.95034 1.86408 1.23387 1.97254 1.31393 1.22094 1.01922 0.99197 0.92292 1.24076 0.95111 0.74980 0.92242 1.88851 1.58110 1.31218 1.53875 1.24359 0.94615 0.94549 0.91869 1.24682 0.99441 0.96921 0.85783 1.89380 1.82796 1.29230 1.29564 1.23338 0.80842 0.72291 0.87814 1.93059 1.81555 1.48471 1.97014 1.93368 1.69024 1.54572 1.96325 1.92973 1.74209 1.96150 1.55259 0.92211 0.75807 0.75697 0.95358 0.90082 0.75638 0.86665 0.89311 0.90960 0.89514 0.86203 0.85539 0.90745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -49.35 9.50 21.44 0.20 -49.14 16 2 C 0.01 0.76 5.20 84.65 0.44 1.20 16 3 Si 0.98 41.15 29.54 68.60 2.03 43.18 16 4 H -0.26 -10.05 7.11 99.48 0.71 -9.34 16 5 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 6 H -0.28 -11.36 7.11 99.48 0.71 -10.65 16 7 C -0.56 -28.98 8.46 25.60 0.22 -28.76 16 8 H 0.09 4.32 7.74 -2.91 -0.02 4.29 16 9 C 0.27 14.20 2.21 44.25 0.10 14.30 16 10 H 0.04 2.66 7.58 -2.39 -0.02 2.64 16 11 N -0.72 -31.19 4.99 -461.41 -2.30 -33.49 16 12 C 0.70 29.43 8.06 179.05 1.44 30.87 16 13 O -0.63 -31.78 14.58 -3.97 -0.06 -31.84 16 14 N -0.71 -22.35 3.84 -457.82 -1.76 -24.11 16 15 C 0.17 4.41 2.37 44.99 0.11 4.52 16 16 H 0.08 2.47 7.58 -2.38 -0.02 2.45 16 17 C 0.07 1.64 6.85 71.98 0.49 2.13 16 18 O -0.58 -11.80 12.83 -148.98 -1.91 -13.72 16 19 C -0.12 -2.41 4.65 30.59 0.14 -2.27 16 20 C 0.23 5.26 4.02 71.98 0.29 5.55 16 21 O -0.40 -8.31 11.22 -126.22 -1.42 -9.72 16 22 C 0.02 0.31 8.06 72.64 0.59 0.90 16 23 C 0.01 0.13 7.99 72.64 0.58 0.71 16 24 O -0.39 -9.63 9.18 -126.22 -1.16 -10.79 16 25 C 0.41 22.25 2.81 71.98 0.20 22.45 16 26 F -0.22 -11.84 15.68 44.97 0.70 -11.14 16 27 F -0.15 -8.79 12.91 44.97 0.58 -8.21 16 28 F -0.20 -10.36 16.94 44.97 0.76 -9.60 16 29 H 0.27 14.25 8.31 -92.70 -0.77 13.48 16 30 H 0.41 15.23 8.55 -92.71 -0.79 14.44 16 31 H 0.41 11.52 7.71 -92.71 -0.71 10.81 16 32 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.39 4.76 9.12 -74.06 -0.68 4.09 16 35 H 0.12 1.91 8.14 -2.38 -0.02 1.89 16 36 H 0.09 1.86 7.73 -2.39 -0.02 1.85 16 37 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 38 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.12 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.13 1.69 8.14 -2.39 -0.02 1.67 16 41 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -72.18 352.66 -0.80 -72.98 By element: Atomic # 1 Polarization: 35.06 SS G_CDS: -1.07 Total: 34.00 kcal Atomic # 6 Polarization: 47.00 SS G_CDS: 4.60 Total: 51.60 kcal Atomic # 7 Polarization: -102.88 SS G_CDS: -3.86 Total: -106.74 kcal Atomic # 8 Polarization: -61.52 SS G_CDS: -4.54 Total: -66.07 kcal Atomic # 9 Polarization: -30.99 SS G_CDS: 2.05 Total: -28.95 kcal Atomic # 14 Polarization: 41.15 SS G_CDS: 2.03 Total: 43.18 kcal Total: -72.18 -0.80 -72.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364167255.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -254.058 kcal (2) G-P(sol) polarization free energy of solvation -72.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -326.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -327.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds