Wall clock time and date at job start Wed Apr 1 2020 00:33:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.46758 * 90.00167 * 3 2 1 5 5 H 1.48499 * 109.47026 * 210.00015 * 3 2 1 6 6 H 1.48496 * 109.47474 * 330.00050 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.07998 * 120.00063 * 179.72354 * 7 2 1 9 9 C 1.50706 * 120.00434 * 359.72891 * 7 2 1 10 10 N 1.46500 * 109.47299 * 180.02562 * 9 7 2 11 11 C 1.34960 * 125.97985 * 124.71356 * 10 9 7 12 12 C 1.35243 * 107.86064 * 179.83521 * 11 10 9 13 13 C 1.40395 * 107.86535 * 0.42509 * 12 11 10 14 14 N 1.40198 * 125.97441 * 179.76148 * 13 12 11 15 15 C 1.34777 * 119.99611 * 359.97438 * 14 13 12 16 16 O 1.21586 * 120.00193 * 0.02562 * 15 14 13 17 17 N 1.34777 * 119.99732 * 180.02562 * 15 14 13 18 18 C 1.49509 * 121.44272 * 180.02562 * 17 15 14 19 19 C 1.44302 * 110.74766 * 98.54057 * 18 17 15 20 20 C 1.53095 * 113.58796 * 59.33036 * 19 18 17 21 21 S 1.78749 * 106.51290 * 275.52110 * 20 19 18 22 22 O 1.42093 * 108.17740 * 208.52917 * 21 20 19 23 23 O 1.42099 * 108.17447 * 338.45649 * 21 20 19 24 24 C 1.82982 * 104.38623 * 93.49176 * 21 20 19 25 25 C 1.42715 * 121.44613 * 359.71968 * 17 15 14 26 26 N 1.31213 * 108.05618 * 359.73465 * 13 12 11 27 27 H 0.97000 * 120.00236 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46434 * 299.99667 * 9 7 2 29 29 H 1.08993 * 109.47348 * 59.99490 * 9 7 2 30 30 H 1.08007 * 126.06930 * 359.97438 * 11 10 9 31 31 H 1.07994 * 126.06644 * 180.15913 * 12 11 10 32 32 H 0.96996 * 120.00476 * 180.02562 * 14 13 12 33 33 H 1.09003 * 109.21705 * 218.86690 * 18 17 15 34 34 H 1.08998 * 109.21990 * 338.20955 * 18 17 15 35 35 H 1.09000 * 108.65968 * 180.39051 * 19 18 17 36 36 H 1.09002 * 108.66141 * 298.27357 * 19 18 17 37 37 H 1.09003 * 110.03964 * 34.77327 * 20 19 18 38 38 H 1.09000 * 110.03705 * 156.27309 * 20 19 18 39 39 H 1.08997 * 109.70529 * 81.48881 * 24 21 20 40 40 H 1.09000 * 109.70201 * 202.05322 * 24 21 20 41 41 H 1.09003 * 108.45607 * 44.53086 * 25 17 15 42 42 H 1.09001 * 108.45578 * 161.87927 * 25 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4403 -0.7000 6 1 1.4466 2.6527 -0.7000 7 6 2.0045 -1.1940 -0.0057 8 1 3.0845 -1.1940 -0.0103 9 6 1.2510 -2.4992 -0.0059 10 7 2.2030 -3.6127 -0.0119 11 6 2.2489 -4.6215 0.8835 12 6 3.2626 -5.4440 0.5300 13 6 3.8667 -4.9131 -0.6208 14 7 4.9602 -5.4625 -1.3049 15 6 5.5263 -6.6036 -0.8646 16 8 5.0884 -7.1568 0.1256 17 7 6.5779 -7.1315 -1.5219 18 6 7.2301 -8.3958 -1.0623 19 6 6.7494 -9.5245 -1.8222 20 6 7.0062 -9.4042 -3.3266 21 16 5.6557 -8.4443 -3.9973 22 8 5.4588 -8.8395 -5.3479 23 8 4.5623 -8.5257 -3.0934 24 6 6.2747 -6.7224 -3.9908 25 6 7.1129 -6.5113 -2.6906 26 7 3.2287 -3.8132 -0.9445 27 1 -0.4850 -0.8400 0.0004 28 1 0.6281 -2.5591 0.8866 29 1 0.6207 -2.5548 -0.8933 30 1 1.5912 -4.7504 1.7304 31 1 3.5580 -6.3464 1.0444 32 1 5.3098 -5.0210 -2.0946 33 1 8.3091 -8.3101 -1.1906 34 1 7.0062 -8.5520 -0.0071 35 1 7.2402 -10.4261 -1.4556 36 1 5.6764 -9.6237 -1.6584 37 1 7.9523 -8.8930 -3.5044 38 1 7.0236 -10.3940 -3.7828 39 1 6.9026 -6.5542 -4.8658 40 1 5.4334 -6.0294 -4.0038 41 1 7.1900 -5.4394 -2.5079 42 1 8.1165 -6.9017 -2.8597 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365126472.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:33:40 Heat of formation + Delta-G solvation = 8.735677 kcal Electronic energy + Delta-G solvation = -28412.502053 eV Core-core repulsion = 24330.153462 eV Total energy + Delta-G solvation = -4082.348591 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.119 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.09902 -40.10465 -37.74566 -36.93799 -36.30884 -35.20709 -34.27278 -33.42918 -31.30568 -30.72918 -29.33697 -27.79088 -26.23768 -24.67857 -23.32409 -22.61279 -21.18212 -20.33744 -19.51773 -19.00189 -18.36317 -17.70260 -17.16137 -16.86325 -16.43572 -16.18765 -15.94646 -15.62626 -15.02989 -14.67215 -14.56304 -14.32507 -14.24790 -13.81709 -13.68726 -13.43309 -13.16490 -12.82359 -12.67396 -12.40799 -12.32961 -12.21490 -12.12023 -12.08086 -11.78500 -11.32399 -11.14704 -11.11878 -10.85227 -10.80875 -10.47171 -10.17908 -10.13593 -9.72953 -9.34192 -8.97960 -8.56724 -8.16310 -7.46146 -6.56705 -4.30634 -0.38719 2.02580 2.38256 2.57222 2.99305 3.19188 3.31108 3.36672 3.40780 3.50712 3.57458 3.71790 3.88571 3.96462 4.06879 4.17482 4.35631 4.41494 4.53406 4.66585 4.81103 4.92640 5.03050 5.08572 5.16077 5.17248 5.38113 5.47537 5.66657 5.72555 5.86453 6.19408 6.38850 6.48686 6.65857 6.75126 6.83656 7.41246 7.60814 7.79977 7.87612 8.36580 8.43786 8.57385 8.64813 9.37715 10.80866 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.019544 B = 0.002700 C = 0.002623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.349093 B =10369.000596 C =10672.317896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.022 3.978 3 Si 1.080 2.920 4 H -0.286 1.286 5 H -0.287 1.287 6 H -0.282 1.282 7 C -0.607 4.607 8 H 0.064 0.936 9 C 0.249 3.751 10 N -0.318 5.318 11 C 0.051 3.949 12 C -0.281 4.281 13 C 0.277 3.723 14 N -0.640 5.640 15 C 0.729 3.271 16 O -0.548 6.548 17 N -0.642 5.642 18 C 0.128 3.872 19 C -0.146 4.146 20 C -0.624 4.624 21 S 2.418 3.582 22 O -0.951 6.951 23 O -0.916 6.916 24 C -0.632 4.632 25 C 0.110 3.890 26 N -0.305 5.305 27 H 0.268 0.732 28 H 0.046 0.954 29 H 0.034 0.966 30 H 0.168 0.832 31 H 0.163 0.837 32 H 0.404 0.596 33 H 0.085 0.915 34 H 0.109 0.891 35 H 0.102 0.898 36 H 0.107 0.893 37 H 0.136 0.864 38 H 0.144 0.856 39 H 0.148 0.852 40 H 0.138 0.862 41 H 0.090 0.910 42 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.532 -19.069 -5.998 27.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.182 4.182 3 Si 0.907 3.093 4 H -0.212 1.212 5 H -0.213 1.213 6 H -0.207 1.207 7 C -0.645 4.645 8 H 0.082 0.918 9 C 0.131 3.869 10 N -0.100 5.100 11 C -0.099 4.099 12 C -0.312 4.312 13 C 0.023 3.977 14 N -0.290 5.290 15 C 0.430 3.570 16 O -0.422 6.422 17 N -0.381 5.381 18 C 0.007 3.993 19 C -0.185 4.185 20 C -0.753 4.753 21 S 2.598 3.402 22 O -0.948 6.948 23 O -0.913 6.913 24 C -0.763 4.763 25 C -0.017 4.017 26 N -0.136 5.136 27 H 0.078 0.922 28 H 0.064 0.936 29 H 0.052 0.948 30 H 0.185 0.815 31 H 0.180 0.820 32 H 0.240 0.760 33 H 0.103 0.897 34 H 0.127 0.873 35 H 0.120 0.880 36 H 0.125 0.875 37 H 0.154 0.846 38 H 0.162 0.838 39 H 0.166 0.834 40 H 0.157 0.843 41 H 0.109 0.891 42 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 18.027 -17.064 -6.322 25.615 hybrid contribution 1.158 -1.751 0.062 2.100 sum 19.185 -18.815 -6.259 27.591 Atomic orbital electron populations 1.70815 1.06787 1.30501 1.46049 1.25919 0.96328 1.02798 0.93204 0.83381 0.74653 0.74356 0.76924 1.21229 1.21295 1.20736 1.22135 0.95395 0.90445 1.56551 0.91815 1.19752 0.86324 0.82830 0.97979 1.48740 1.23393 1.19612 1.18259 1.22549 1.00447 0.90169 0.96734 1.21510 1.02048 1.06140 1.01490 1.18761 0.90727 0.93966 0.94267 1.41445 1.31491 1.24823 1.31273 1.15332 0.79144 0.79885 0.82617 1.90858 1.63108 1.61744 1.26452 1.47273 1.34385 1.28121 1.28366 1.20423 0.96552 0.80733 1.01563 1.20333 1.06649 1.01183 0.90360 1.30121 1.20588 1.16444 1.08154 1.08036 0.78144 0.78692 0.75284 1.93572 1.84807 1.81092 1.35279 1.93654 1.47006 1.85173 1.65513 1.31560 1.12805 1.25398 1.06539 1.20949 0.96638 1.01470 0.82678 1.77321 1.03767 1.16333 1.16206 0.92202 0.93618 0.94788 0.81502 0.81977 0.75987 0.89701 0.87284 0.87979 0.87486 0.84568 0.83778 0.83362 0.84339 0.89149 0.87930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.54 13.65 55.43 0.76 -25.78 16 2 C 0.02 0.62 5.46 -17.82 -0.10 0.52 16 3 Si 1.08 25.00 29.90 -169.99 -5.08 19.91 16 4 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.29 -6.44 7.11 56.52 0.40 -6.03 16 6 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.61 -17.16 9.24 -34.44 -0.32 -17.48 16 8 H 0.06 1.88 7.81 -52.49 -0.41 1.47 16 9 C 0.25 6.39 5.57 -5.19 -0.03 6.37 16 10 N -0.32 -7.58 3.67 -62.56 -0.23 -7.81 16 11 C 0.05 1.04 11.43 -17.24 -0.20 0.84 16 12 C -0.28 -5.75 9.61 -39.84 -0.38 -6.13 16 13 C 0.28 5.73 8.11 -154.36 -1.25 4.48 16 14 N -0.64 -10.20 5.33 -15.51 -0.08 -10.28 16 15 C 0.73 10.61 7.73 -86.92 -0.67 9.94 16 16 O -0.55 -9.70 13.11 5.29 0.07 -9.63 16 17 N -0.64 -5.74 1.89 -182.56 -0.35 -6.09 16 18 C 0.13 0.78 5.46 -6.41 -0.03 0.75 16 19 C -0.15 -0.83 5.14 -30.73 -0.16 -0.99 16 20 C -0.62 -2.66 5.93 37.21 0.22 -2.44 16 21 S 2.42 20.91 4.99 -107.50 -0.54 20.37 16 22 O -0.95 -11.51 18.07 -57.89 -1.05 -12.56 16 23 O -0.92 -12.42 15.10 -57.89 -0.87 -13.29 16 24 C -0.63 -3.68 6.92 38.84 0.27 -3.41 16 25 C 0.11 0.59 4.48 -4.35 -0.02 0.57 16 26 N -0.31 -7.20 12.42 31.44 0.39 -6.80 16 27 H 0.27 7.68 7.22 -40.82 -0.29 7.39 16 28 H 0.05 1.13 7.94 -51.93 -0.41 0.72 16 29 H 0.03 0.91 8.00 -51.93 -0.42 0.49 16 30 H 0.17 2.80 8.06 -52.48 -0.42 2.37 16 31 H 0.16 3.23 5.91 -52.49 -0.31 2.92 16 32 H 0.40 5.22 6.19 -40.82 -0.25 4.97 16 33 H 0.08 0.21 7.81 -51.93 -0.41 -0.20 16 34 H 0.11 0.82 7.36 -51.93 -0.38 0.44 16 35 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.11 0.96 6.31 -51.93 -0.33 0.63 16 37 H 0.14 0.10 6.90 -51.81 -0.36 -0.25 16 38 H 0.14 0.45 8.14 -51.82 -0.42 0.03 16 39 H 0.15 0.37 8.14 -51.93 -0.42 -0.06 16 40 H 0.14 0.98 7.42 -51.93 -0.39 0.59 16 41 H 0.09 0.47 7.17 -51.93 -0.37 0.09 16 42 H 0.10 0.12 6.71 -51.93 -0.35 -0.23 16 LS Contribution 349.75 15.07 5.27 5.27 Total: -1.00 -40.88 349.75 -9.54 -50.42 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: -5.16 Total: 3.27 kcal Atomic # 6 Polarization: -4.31 SS G_CDS: -2.67 Total: -6.98 kcal Atomic # 7 Polarization: -57.26 SS G_CDS: 0.49 Total: -56.77 kcal Atomic # 8 Polarization: -33.64 SS G_CDS: -1.85 Total: -35.49 kcal Atomic # 14 Polarization: 25.00 SS G_CDS: -5.08 Total: 19.91 kcal Atomic # 16 Polarization: 20.91 SS G_CDS: -0.54 Total: 20.37 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -40.88 -9.54 -50.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365126472.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.153 kcal (2) G-P(sol) polarization free energy of solvation -40.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.418 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds