Wall clock time and date at job start Wed Apr 1 2020 00:33:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.46758 * 90.00167 * 3 2 1 5 5 H 1.48499 * 109.47026 * 210.00015 * 3 2 1 6 6 H 1.48496 * 109.47474 * 330.00050 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.07998 * 120.00063 * 179.72354 * 7 2 1 9 9 C 1.50706 * 120.00434 * 359.72891 * 7 2 1 10 10 N 1.46500 * 109.47299 * 180.02562 * 9 7 2 11 11 C 1.34960 * 125.97985 * 124.71356 * 10 9 7 12 12 C 1.35243 * 107.86064 * 179.83521 * 11 10 9 13 13 C 1.40395 * 107.86535 * 0.42509 * 12 11 10 14 14 N 1.40198 * 125.97441 * 179.76148 * 13 12 11 15 15 C 1.34777 * 119.99611 * 359.97438 * 14 13 12 16 16 O 1.21586 * 120.00193 * 0.02562 * 15 14 13 17 17 N 1.34777 * 119.99732 * 180.02562 * 15 14 13 18 18 C 1.49509 * 121.44272 * 180.02562 * 17 15 14 19 19 C 1.44302 * 110.74766 * 98.54057 * 18 17 15 20 20 C 1.53095 * 113.58796 * 59.33036 * 19 18 17 21 21 S 1.78749 * 106.51290 * 275.52110 * 20 19 18 22 22 O 1.42093 * 108.17740 * 208.52917 * 21 20 19 23 23 O 1.42099 * 108.17447 * 338.45649 * 21 20 19 24 24 C 1.82982 * 104.38623 * 93.49176 * 21 20 19 25 25 C 1.42715 * 121.44613 * 359.71968 * 17 15 14 26 26 N 1.31213 * 108.05618 * 359.73465 * 13 12 11 27 27 H 0.97000 * 120.00236 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46434 * 299.99667 * 9 7 2 29 29 H 1.08993 * 109.47348 * 59.99490 * 9 7 2 30 30 H 1.08007 * 126.06930 * 359.97438 * 11 10 9 31 31 H 1.07994 * 126.06644 * 180.15913 * 12 11 10 32 32 H 0.96996 * 120.00476 * 180.02562 * 14 13 12 33 33 H 1.09003 * 109.21705 * 218.86690 * 18 17 15 34 34 H 1.08998 * 109.21990 * 338.20955 * 18 17 15 35 35 H 1.09000 * 108.65968 * 180.39051 * 19 18 17 36 36 H 1.09002 * 108.66141 * 298.27357 * 19 18 17 37 37 H 1.09003 * 110.03964 * 34.77327 * 20 19 18 38 38 H 1.09000 * 110.03705 * 156.27309 * 20 19 18 39 39 H 1.08997 * 109.70529 * 81.48881 * 24 21 20 40 40 H 1.09000 * 109.70201 * 202.05322 * 24 21 20 41 41 H 1.09003 * 108.45607 * 44.53086 * 25 17 15 42 42 H 1.09001 * 108.45578 * 161.87927 * 25 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4403 -0.7000 6 1 1.4466 2.6527 -0.7000 7 6 2.0045 -1.1940 -0.0057 8 1 3.0845 -1.1940 -0.0103 9 6 1.2510 -2.4992 -0.0059 10 7 2.2030 -3.6127 -0.0119 11 6 2.2489 -4.6215 0.8835 12 6 3.2626 -5.4440 0.5300 13 6 3.8667 -4.9131 -0.6208 14 7 4.9602 -5.4625 -1.3049 15 6 5.5263 -6.6036 -0.8646 16 8 5.0884 -7.1568 0.1256 17 7 6.5779 -7.1315 -1.5219 18 6 7.2301 -8.3958 -1.0623 19 6 6.7494 -9.5245 -1.8222 20 6 7.0062 -9.4042 -3.3266 21 16 5.6557 -8.4443 -3.9973 22 8 5.4588 -8.8395 -5.3479 23 8 4.5623 -8.5257 -3.0934 24 6 6.2747 -6.7224 -3.9908 25 6 7.1129 -6.5113 -2.6906 26 7 3.2287 -3.8132 -0.9445 27 1 -0.4850 -0.8400 0.0004 28 1 0.6281 -2.5591 0.8866 29 1 0.6207 -2.5548 -0.8933 30 1 1.5912 -4.7504 1.7304 31 1 3.5580 -6.3464 1.0444 32 1 5.3098 -5.0210 -2.0946 33 1 8.3091 -8.3101 -1.1906 34 1 7.0062 -8.5520 -0.0071 35 1 7.2402 -10.4261 -1.4556 36 1 5.6764 -9.6237 -1.6584 37 1 7.9523 -8.8930 -3.5044 38 1 7.0236 -10.3940 -3.7828 39 1 6.9026 -6.5542 -4.8658 40 1 5.4334 -6.0294 -4.0038 41 1 7.1900 -5.4394 -2.5079 42 1 8.1165 -6.9017 -2.8597 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001365126472.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:33:39 Heat of formation + Delta-G solvation = -23.417101 kcal Electronic energy + Delta-G solvation = -28413.896302 eV Core-core repulsion = 24330.153462 eV Total energy + Delta-G solvation = -4083.742840 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.119 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.40537 -41.37759 -38.60941 -37.70941 -37.07368 -36.50021 -35.77397 -34.65588 -32.56209 -31.82262 -31.01966 -28.56149 -27.89629 -25.59758 -24.88194 -23.60061 -22.54023 -21.71261 -20.67518 -19.76433 -19.27800 -19.17609 -18.44909 -18.06185 -17.23806 -17.14418 -16.87161 -16.67423 -16.25887 -15.90423 -15.62459 -15.51204 -15.30580 -15.03410 -14.73780 -14.60853 -14.13825 -13.91614 -13.85357 -13.71955 -13.46349 -13.23480 -13.12849 -13.01576 -12.78709 -12.59760 -12.57901 -12.03682 -11.97268 -11.82827 -11.69993 -11.68085 -11.35455 -11.09045 -11.00660 -10.69121 -10.08937 -9.82391 -9.16728 -8.77558 -6.56285 -0.96794 0.94332 1.02227 1.50295 1.58480 1.61221 1.77954 1.85377 1.90306 2.32917 2.48343 2.68246 2.80413 2.96892 3.01121 3.40805 3.67196 3.71943 3.84338 3.98034 4.08716 4.14216 4.28856 4.45076 4.50369 4.55404 4.64319 4.68267 4.71618 4.77748 4.81641 4.85041 4.99514 5.07815 5.25645 5.43810 5.51935 5.67565 5.83194 5.93880 6.26640 6.40919 6.52653 7.00454 7.20086 7.32118 8.57855 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.019544 B = 0.002700 C = 0.002623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.349093 B =10369.000596 C =10672.317896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.020 4.020 3 Si 1.124 2.876 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.276 1.276 7 C -0.620 4.620 8 H 0.046 0.954 9 C 0.259 3.741 10 N -0.344 5.344 11 C 0.055 3.945 12 C -0.290 4.290 13 C 0.285 3.715 14 N -0.638 5.638 15 C 0.721 3.279 16 O -0.588 6.588 17 N -0.631 5.631 18 C 0.119 3.881 19 C -0.148 4.148 20 C -0.590 4.590 21 S 2.388 3.612 22 O -1.001 7.001 23 O -0.985 6.985 24 C -0.616 4.616 25 C 0.092 3.908 26 N -0.348 5.348 27 H 0.260 0.740 28 H 0.054 0.946 29 H 0.014 0.986 30 H 0.202 0.798 31 H 0.169 0.831 32 H 0.417 0.583 33 H 0.143 0.857 34 H 0.089 0.911 35 H 0.137 0.863 36 H 0.064 0.936 37 H 0.190 0.810 38 H 0.162 0.838 39 H 0.191 0.809 40 H 0.119 0.881 41 H 0.097 0.903 42 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.878 -19.573 -6.268 31.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.220 4.220 3 Si 0.945 3.055 4 H -0.193 1.193 5 H -0.204 1.204 6 H -0.201 1.201 7 C -0.658 4.658 8 H 0.065 0.935 9 C 0.140 3.860 10 N -0.126 5.126 11 C -0.093 4.093 12 C -0.321 4.321 13 C 0.029 3.971 14 N -0.290 5.290 15 C 0.423 3.577 16 O -0.464 6.464 17 N -0.369 5.369 18 C 0.000 4.000 19 C -0.188 4.188 20 C -0.723 4.723 21 S 2.578 3.422 22 O -0.998 6.998 23 O -0.982 6.982 24 C -0.749 4.749 25 C -0.033 4.033 26 N -0.179 5.179 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.032 0.968 30 H 0.219 0.781 31 H 0.186 0.814 32 H 0.255 0.745 33 H 0.161 0.839 34 H 0.107 0.893 35 H 0.154 0.846 36 H 0.083 0.917 37 H 0.208 0.792 38 H 0.180 0.820 39 H 0.208 0.792 40 H 0.137 0.863 41 H 0.115 0.885 42 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 22.374 -17.627 -6.645 29.248 hybrid contribution -0.053 -1.774 0.134 1.780 sum 22.321 -19.401 -6.510 30.282 Atomic orbital electron populations 1.70914 1.07507 1.30187 1.47451 1.27333 0.96427 1.06166 0.92028 0.82829 0.73844 0.70802 0.78053 1.19292 1.20371 1.20112 1.22307 0.94724 0.92013 1.56784 0.93522 1.19425 0.86429 0.82882 0.97264 1.48539 1.24097 1.20245 1.19714 1.23159 1.00547 0.88832 0.96742 1.21712 1.02244 1.06356 1.01756 1.19122 0.91008 0.92860 0.94080 1.41540 1.30447 1.25535 1.31485 1.15705 0.80149 0.79201 0.82674 1.90810 1.64659 1.62521 1.28445 1.47392 1.32232 1.28595 1.28663 1.20841 0.99286 0.79295 1.00551 1.20345 1.04450 1.02602 0.91360 1.29884 1.19537 1.16611 1.06220 1.08383 0.79527 0.80468 0.73871 1.93508 1.86477 1.82389 1.37446 1.93590 1.51681 1.86562 1.66363 1.31456 1.12942 1.21582 1.08934 1.21506 0.98876 1.02337 0.80627 1.77230 1.04966 1.18254 1.17415 0.93000 0.92843 0.96772 0.78126 0.81396 0.74532 0.83911 0.89260 0.84555 0.91717 0.79215 0.82027 0.79179 0.86280 0.88476 0.81609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.81 13.65 21.45 0.29 -54.52 16 2 C -0.02 -1.14 5.46 84.65 0.46 -0.68 16 3 Si 1.12 50.01 29.90 68.60 2.05 52.06 16 4 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 5 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 6 H -0.28 -11.95 7.11 99.48 0.71 -11.25 16 7 C -0.62 -35.87 9.24 25.60 0.24 -35.63 16 8 H 0.05 2.81 7.81 -2.91 -0.02 2.79 16 9 C 0.26 13.77 5.57 85.64 0.48 14.24 16 10 N -0.34 -16.90 3.67 -351.84 -1.29 -18.19 16 11 C 0.06 2.31 11.43 83.52 0.96 3.26 16 12 C -0.29 -12.15 9.61 22.10 0.21 -11.94 16 13 C 0.29 12.13 8.11 133.31 1.08 13.21 16 14 N -0.64 -20.52 5.33 -321.23 -1.71 -22.24 16 15 C 0.72 20.80 7.73 179.05 1.38 22.19 16 16 O -0.59 -21.27 13.11 -3.99 -0.05 -21.32 16 17 N -0.63 -9.61 1.89 -849.77 -1.61 -11.22 16 18 C 0.12 0.99 5.46 83.17 0.45 1.44 16 19 C -0.15 -1.19 5.14 28.01 0.14 -1.05 16 20 C -0.59 -2.39 5.93 72.01 0.43 -1.96 16 21 S 2.39 39.43 4.99 -56.49 -0.28 39.15 16 22 O -1.00 -24.52 18.07 -127.31 -2.30 -26.82 16 23 O -0.98 -28.55 15.10 -127.31 -1.92 -30.47 16 24 C -0.62 -5.52 6.92 73.07 0.51 -5.02 16 25 C 0.09 0.57 4.48 88.16 0.39 0.96 16 26 N -0.35 -16.96 12.42 -54.44 -0.68 -17.63 16 27 H 0.26 15.34 7.22 -92.71 -0.67 14.67 16 28 H 0.05 2.72 7.94 -2.39 -0.02 2.70 16 29 H 0.01 0.81 8.00 -2.39 -0.02 0.79 16 30 H 0.20 6.65 8.06 -2.91 -0.02 6.62 16 31 H 0.17 6.86 5.91 -2.91 -0.02 6.85 16 32 H 0.42 10.73 6.19 -92.71 -0.57 10.16 16 33 H 0.14 -0.38 7.81 -2.39 -0.02 -0.40 16 34 H 0.09 1.16 7.36 -2.39 -0.02 1.15 16 35 H 0.14 0.25 8.14 -2.39 -0.02 0.23 16 36 H 0.06 1.16 6.31 -2.39 -0.02 1.15 16 37 H 0.19 -1.25 6.90 -2.46 -0.02 -1.27 16 38 H 0.16 0.28 8.14 -2.46 -0.02 0.26 16 39 H 0.19 0.07 8.14 -2.39 -0.02 0.05 16 40 H 0.12 1.63 7.42 -2.39 -0.02 1.61 16 41 H 0.10 0.60 7.17 -2.39 -0.02 0.59 16 42 H 0.17 -0.98 6.71 -2.39 -0.02 -1.00 16 Total: -1.00 -97.84 349.75 -0.17 -98.00 By element: Atomic # 1 Polarization: 13.56 SS G_CDS: 0.60 Total: 14.16 kcal Atomic # 6 Polarization: -7.70 SS G_CDS: 6.73 Total: -0.97 kcal Atomic # 7 Polarization: -118.80 SS G_CDS: -4.99 Total: -123.80 kcal Atomic # 8 Polarization: -74.33 SS G_CDS: -4.27 Total: -78.61 kcal Atomic # 14 Polarization: 50.01 SS G_CDS: 2.05 Total: 52.06 kcal Atomic # 16 Polarization: 39.43 SS G_CDS: -0.28 Total: 39.15 kcal Total: -97.84 -0.17 -98.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365126472.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.586 kcal (2) G-P(sol) polarization free energy of solvation -97.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds