Wall clock time and date at job start Wed Apr 1 2020 01:42:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47228 * 2 1 4 4 C 1.50700 * 109.47412 * 240.00240 * 2 1 3 5 5 H 1.08002 * 120.00194 * 239.99861 * 4 2 1 6 6 C 1.37882 * 120.00148 * 59.99622 * 4 2 1 7 7 N 1.31514 * 119.99749 * 0.02562 * 6 4 2 8 8 Si 1.86791 * 120.00302 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47078 * 90.00183 * 8 6 4 10 10 H 1.48503 * 109.47395 * 210.00071 * 8 6 4 11 11 H 1.48503 * 109.47279 * 330.00432 * 8 6 4 12 12 C 1.53003 * 109.47265 * 120.00473 * 2 1 3 13 13 N 1.46497 * 109.46635 * 299.99689 * 12 2 1 14 14 C 1.34774 * 120.00037 * 179.97438 * 13 12 2 15 15 O 1.21583 * 119.99973 * 0.02562 * 14 13 12 16 16 N 1.34773 * 120.00529 * 180.27668 * 14 13 12 17 17 C 1.39433 * 120.00350 * 174.62993 * 16 14 13 18 18 C 1.39400 * 120.14942 * 185.10009 * 17 16 14 19 19 C 1.38611 * 117.90881 * 179.74395 * 18 17 16 20 20 C 1.38780 * 118.03039 * 0.52154 * 19 18 17 21 21 S 1.76204 * 120.00050 * 179.75291 * 20 19 18 22 22 C 1.81402 * 104.44828 * 269.98159 * 21 20 19 23 23 O 1.42099 * 104.27470 * 26.04934 * 21 20 19 24 24 O 1.42094 * 104.27706 * 153.90882 * 21 20 19 25 25 N 1.31819 * 120.00291 * 359.73233 * 20 19 18 26 26 N 1.28356 * 122.27247 * 0.02562 * 25 20 19 27 27 H 1.08990 * 109.46975 * 299.99801 * 1 2 3 28 28 H 1.09001 * 109.47115 * 60.00104 * 1 2 3 29 29 H 1.08998 * 109.46674 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47521 * 180.02562 * 3 2 1 31 31 H 1.08994 * 109.47156 * 300.00296 * 3 2 1 32 32 H 1.09004 * 109.47074 * 60.00011 * 3 2 1 33 33 H 0.96994 * 120.00240 * 180.02562 * 7 6 4 34 34 H 1.09001 * 109.47105 * 180.02562 * 12 2 1 35 35 H 1.08992 * 109.47319 * 59.99756 * 12 2 1 36 36 H 0.97001 * 120.00320 * 0.02562 * 13 12 2 37 37 H 0.97001 * 120.00160 * 354.64130 * 16 14 13 38 38 H 1.07993 * 121.04417 * 359.97438 * 18 17 16 39 39 H 1.08000 * 120.98554 * 180.25720 * 19 18 17 40 40 H 1.09005 * 109.47197 * 59.99771 * 22 21 20 41 41 H 1.08997 * 109.46977 * 179.97438 * 22 21 20 42 42 H 1.09001 * 109.46907 * 300.00193 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6993 -0.2393 -2.4828 7 7 0.9435 0.8302 -2.6034 8 14 2.3214 -1.1201 -4.0080 9 1 1.3428 -2.1615 -4.4119 10 1 2.4866 -0.1412 -5.1123 11 1 3.6294 -1.7582 -3.7123 12 6 2.0400 -0.7214 1.2492 13 7 1.5517 -0.0307 2.4453 14 6 1.8769 -0.4915 3.6694 15 8 2.5758 -1.4801 3.7810 16 7 1.4231 0.1405 4.7699 17 6 1.6650 -0.3983 6.0330 18 6 1.1078 0.1940 7.1652 19 6 1.3741 -0.3832 8.3970 20 6 2.1873 -1.5074 8.4283 21 16 2.5650 -2.2790 9.9667 22 6 4.0769 -1.4498 10.5298 23 8 1.4692 -1.9418 10.8062 24 8 2.8361 -3.6310 9.6234 25 7 2.6768 -1.9983 7.3071 26 7 2.4301 -1.4714 6.1629 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0277 -0.0005 30 1 3.1300 1.4426 -0.0005 31 1 1.6767 1.9563 -0.8899 32 1 1.6767 1.9564 0.8900 33 1 0.7089 1.1614 -3.4843 34 1 3.1300 -0.7209 1.2494 35 1 1.6767 -1.7489 1.2492 36 1 0.9938 0.7577 2.3564 37 1 0.9281 0.9702 4.6833 38 1 0.4851 1.0726 7.0848 39 1 0.9646 0.0322 9.3059 40 1 3.8846 -0.3831 10.6459 41 1 4.3862 -1.8691 11.4871 42 1 4.8680 -1.5984 9.7949 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365527852.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:42:34 Heat of formation + Delta-G solvation = -19.113367 kcal Electronic energy + Delta-G solvation = -27049.388311 eV Core-core repulsion = 22965.832095 eV Total energy + Delta-G solvation = -4083.556216 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.119 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.59617 -39.82021 -37.49559 -36.81537 -36.32230 -35.39342 -33.63908 -33.46969 -31.64867 -30.61369 -29.96634 -26.03505 -25.81799 -25.47763 -25.29537 -24.16021 -21.27404 -19.93582 -19.05500 -18.92753 -18.34724 -18.05773 -17.24960 -16.73121 -15.93837 -15.93152 -15.85508 -14.95925 -14.83714 -14.80259 -14.69908 -14.27682 -13.76929 -13.67478 -13.65537 -13.16257 -12.96588 -12.80385 -12.45885 -12.32208 -12.28479 -11.88963 -11.50694 -11.39366 -11.28117 -11.13862 -10.91611 -10.78369 -10.73647 -10.46936 -10.34571 -10.21927 -9.72716 -9.70343 -9.42095 -9.25975 -8.87415 -8.55417 -8.40031 -6.08117 -4.18068 -0.44107 0.18482 0.40422 2.16687 2.36477 2.83015 3.25731 3.32851 3.37200 3.38572 3.45910 3.56713 3.89378 3.99328 4.13908 4.29572 4.31336 4.38073 4.45612 4.65666 4.90450 5.16821 5.18707 5.19186 5.34304 6.00080 6.06467 6.24323 6.37530 6.56910 6.68158 6.71540 6.86614 6.90384 6.93245 7.26890 7.46914 7.63634 7.92885 7.93883 8.07241 8.29526 8.33938 8.64975 8.82724 9.48148 10.93453 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.033038 B = 0.001961 C = 0.001901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.309719 B =14274.034145 C =14721.895545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.056 3.944 3 C -0.131 4.131 4 C -0.506 4.506 5 H 0.059 0.941 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.895 3.105 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.274 1.274 12 C 0.148 3.852 13 N -0.721 5.721 14 C 0.680 3.320 15 O -0.525 6.525 16 N -0.660 5.660 17 C 0.369 3.631 18 C -0.173 4.173 19 C -0.016 4.016 20 C -0.542 4.542 21 S 2.520 3.480 22 C -0.645 4.645 23 O -0.932 6.932 24 O -0.911 6.911 25 N -0.104 5.104 26 N -0.232 5.232 27 H 0.004 0.996 28 H 0.086 0.914 29 H 0.028 0.972 30 H 0.028 0.972 31 H 0.086 0.914 32 H 0.004 0.996 33 H 0.260 0.740 34 H 0.058 0.942 35 H 0.058 0.942 36 H 0.396 0.604 37 H 0.417 0.583 38 H 0.162 0.838 39 H 0.170 0.830 40 H 0.132 0.868 41 H 0.137 0.863 42 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.432 5.169 25.390 25.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.055 3.945 3 C -0.188 4.188 4 C -0.544 4.544 5 H 0.077 0.923 6 C -0.135 4.135 7 N -0.525 5.525 8 Si 0.723 3.277 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.198 1.198 12 C 0.026 3.974 13 N -0.376 5.376 14 C 0.379 3.621 15 O -0.396 6.396 16 N -0.308 5.308 17 C 0.131 3.869 18 C -0.207 4.207 19 C -0.044 4.044 20 C -0.770 4.770 21 S 2.693 3.307 22 C -0.797 4.797 23 O -0.928 6.928 24 O -0.908 6.908 25 N 0.048 4.952 26 N -0.086 5.086 27 H 0.023 0.977 28 H 0.105 0.895 29 H 0.047 0.953 30 H 0.047 0.953 31 H 0.105 0.895 32 H 0.023 0.977 33 H 0.070 0.930 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.231 0.769 37 H 0.254 0.746 38 H 0.180 0.820 39 H 0.188 0.812 40 H 0.150 0.850 41 H 0.156 0.844 42 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 1.414 2.617 24.700 24.879 hybrid contribution -0.861 2.289 -0.876 2.598 sum 0.553 4.906 23.824 24.330 Atomic orbital electron populations 1.21837 0.97711 0.99298 1.00021 1.18385 0.92845 0.92808 0.90430 1.21836 0.98694 0.98285 1.00019 1.20961 1.31589 1.12167 0.89722 0.92285 1.24880 0.94829 0.94903 0.98921 1.69792 1.36674 1.22713 1.23319 0.86544 0.79386 0.79370 0.82429 1.20672 1.21271 1.19836 1.21754 0.98279 0.95651 0.81761 1.45604 1.54919 1.33008 1.04111 1.16228 0.81592 0.83766 0.80468 1.91092 1.38839 1.25187 1.84459 1.43046 1.57356 1.27485 1.02876 1.20219 0.89784 0.91120 0.85810 1.21897 1.03649 1.03526 0.91590 1.21933 0.91422 0.91388 0.99699 1.34572 1.12089 1.10063 1.20282 1.05128 0.77058 0.75306 0.73207 1.30183 1.21299 1.14940 1.13238 1.93607 1.49548 1.84920 1.64758 1.93630 1.85451 1.29780 1.81943 1.73336 1.10644 1.18150 0.93046 1.73890 1.12544 1.07470 1.14711 0.97658 0.89518 0.95315 0.95318 0.89517 0.97671 0.92964 0.92379 0.92380 0.76918 0.74552 0.82020 0.81226 0.84964 0.84448 0.84409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.82 8.08 37.16 0.30 -2.52 16 2 C 0.06 1.24 0.50 -155.66 -0.08 1.17 16 3 C -0.13 -2.79 8.08 37.16 0.30 -2.49 16 4 C -0.51 -12.90 8.01 -34.44 -0.28 -13.17 16 5 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 6 C 0.07 1.70 5.15 -17.82 -0.09 1.61 16 7 N -0.89 -23.01 9.35 55.43 0.52 -22.49 16 8 Si 0.89 20.44 29.54 -169.99 -5.02 15.42 16 9 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 10 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 12 C 0.15 3.01 4.50 -4.04 -0.02 2.99 16 13 N -0.72 -11.84 4.96 -65.23 -0.32 -12.16 16 14 C 0.68 11.41 8.52 -86.92 -0.74 10.67 16 15 O -0.53 -11.24 14.64 5.29 0.08 -11.16 16 16 N -0.66 -7.83 5.40 -15.70 -0.08 -7.91 16 17 C 0.37 4.67 7.51 -154.47 -1.16 3.51 16 18 C -0.17 -1.38 10.07 -39.01 -0.39 -1.78 16 19 C -0.02 -0.12 9.60 -39.24 -0.38 -0.50 16 20 C -0.54 -5.62 6.61 -17.36 -0.11 -5.74 16 21 S 2.52 19.84 5.87 -107.50 -0.63 19.21 16 22 C -0.65 -2.10 10.80 101.05 1.09 -1.00 16 23 O -0.93 -8.71 17.17 -57.54 -0.99 -9.70 16 24 O -0.91 -11.32 17.75 -57.54 -1.02 -12.35 16 25 N -0.10 -1.54 11.20 31.21 0.35 -1.19 16 26 N -0.23 -3.86 9.08 31.28 0.28 -3.58 16 27 H 0.00 0.08 6.86 -51.93 -0.36 -0.27 16 28 H 0.09 2.08 6.07 -51.93 -0.32 1.76 16 29 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.09 2.07 6.07 -51.93 -0.32 1.75 16 32 H 0.00 0.08 6.86 -51.93 -0.36 -0.28 16 33 H 0.26 6.55 8.31 -40.82 -0.34 6.21 16 34 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 35 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 36 H 0.40 5.52 6.18 -40.82 -0.25 5.27 16 37 H 0.42 3.00 8.73 -40.82 -0.36 2.64 16 38 H 0.16 0.58 8.06 -52.49 -0.42 0.15 16 39 H 0.17 0.65 7.64 -52.49 -0.40 0.24 16 40 H 0.13 0.14 8.14 -51.92 -0.42 -0.29 16 41 H 0.14 0.18 8.14 -51.93 -0.42 -0.24 16 42 H 0.14 0.43 8.14 -51.92 -0.42 0.01 16 LS Contribution 363.23 15.07 5.47 5.47 Total: -1.00 -37.39 363.23 -8.20 -45.59 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: -5.28 Total: 2.10 kcal Atomic # 6 Polarization: -5.70 SS G_CDS: -1.56 Total: -7.26 kcal Atomic # 7 Polarization: -48.07 SS G_CDS: 0.74 Total: -47.33 kcal Atomic # 8 Polarization: -31.27 SS G_CDS: -1.93 Total: -33.21 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Atomic # 16 Polarization: 19.84 SS G_CDS: -0.63 Total: 19.21 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -37.39 -8.20 -45.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365527852.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.477 kcal (2) G-P(sol) polarization free energy of solvation -37.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds